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Morphology and phylogenetic relationships of Micractinium (Chlorellaceae, Trebouxiophyceae) taxa, including three new species from Antarctica

  • Chae, Hyunsik;Lim, Sooyeon;Kim, Han Soon;Choi, Han-Gu;Kim, Ji Hee
    • ALGAE
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    • v.34 no.4
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    • pp.267-275
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    • 2019
  • Three new species of the genus Micractinium were collected from five localities on the South Shetland Islands in maritime Antarctica, and their morphological and molecular characteristics were investigated. The vegetative cells are spherical to ellipsoidal and a single chloroplast is parietal with a pyrenoid. Because of their simple morphology, no conspicuous morphological characters of new species were recognized under light microscopy. However, molecular phylogenetic relationships were inferred from the concatenated small subunit rDNA, and internal transcribed spacer (ITS) sequence data indicated that the Antarctic microalgal strains are strongly allied to the well-supported genus Micractinium, including M. pusillum, the type species of the genus, and three other species in the genus. The secondary structure of ITS2 and compensatory base changes were used to identify and describe six Antarctic Micractinium strains. Based on their morphological and molecular characteristics, we characterized three new species of Micractinium: M. simplicissimum sp. nov., M. singularis sp. nov., and M. variabile sp. nov.

The Effect of Removing Swimbladder Gas on the Broadband Acoustic Backscattering Characteristics of Six Species of Swimbladdered Fish (부레를 갖는 6개 어종의 광대역 음향산란특성에 대한 부레 가스 제거의 효과)

  • Lee, Dae-Jae
    • Korean Journal of Fisheries and Aquatic Sciences
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    • v.53 no.2
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    • pp.218-230
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    • 2020
  • The single anatomical attribute that has the greatest influence on acoustic scattering from fish is the presence or absence of a swimbladder. This study examined the effect of removing the gas from the swimbladder on the broadband backscattering characteristics of six species of swimbladdered fish: striped beakperch Oplegnathus fasciatus, black scraper Thamnaconus modestus, dark-banded rockfish Sebastes inermis, goldeye rockfish Sebastes thompsoni, black rockfish Sebastes schlegeli and panther puffer Takifugu pardalis. Before and after removing the gas from the swimbladder, the species-specific, frequency-dependent backscattered echo signals from anaesthetized individuals of each fish species were measured at approximately 1° intervals spanning a 90° aspect angle range from -45° (head down) to +45° (head up) using a broadband echo sounder operating at 100-200 kHz. The relationship between the wavelength-normalized backscattering cross section (σ/λ2) and fish length (L/λ) was calculated for each species. The average σ/λ2 value for the six fish species at a L/λ range of 19.79-25.85, with a mean of 22.89, was reduced by approximately 52.3% when the gas was removed.

Method of DNA Extraction from Pinus rigida Wood Pretreated with Sandpaper

  • Lee, Jamin;Kim, Tae-Jong
    • Journal of the Korean Wood Science and Technology
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    • v.46 no.4
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    • pp.402-414
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    • 2018
  • Species identification of wood provides important information for archaeology, restoration of cultural assets, preventing illegal logging, and more. Wood species are usually identified based on their anatomical features with the use of a microscope. However, this method may not be able to distinguish between anatomically similar species or subspecies. To overcome this problem, wood species need to be identified at the molecular level using DNA sequencing. However, unlike living plant cells, wood is difficult to pulverize using a mortar, and DNA extraction from dried wood is challenging. To solve these problems, we propose a pretreatment method in which wood is pulverized using 60-grit sandpaper and hydrated with water for 2 days. Using this method, we were able to stably amplify the rpoB gene from the extracted DNA of Pinus rigida. In addition, sequence analysis of the rpoB gene revealed six single nucleotide polymorphisms (SNPs), which classified the rpoB sequences in the genus Pinus into five groups. Our data indicate that although these SNPs were not suitable for species identification, they can potentially be used to determine the origin of different wood subspecies or individual samples of wood.

The Status of Spot Damage and Fruit Piercing Pests on Yuzu (Citrus Junos) Fruit (유자과실의 반점피해 상황과 흡즙해충의 종류에 관하여)

  • 최덕수;김규진;임근철
    • Korean journal of applied entomology
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    • v.39 no.4
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    • pp.259-266
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    • 2000
  • This study was carried out to investigate the status of spot damage by fruit piercing pests and the kinds of these pests on yuzu (Citrus junos) fruit in Koheung, the most chief producing district of yuzu fruit in Korea, from ’97 to ’99. The extent of spot damage by fruit piercing pests on yuzu was increasing in recent years. This damage of fruits was severe in the lower canopy than the high one from ground and intercropping groves between yuzu trees had a greater damage to compare with single cropping of yuzu. Spot damage of yuzu fruit was occurred mainly from late September to early November when yuzu fruit is enlarging and coloring yellow. The blackish concave spot on yuzu fruit surface was appeared in 3 days after introduction of Riptortus clavatus into a netted cage containing one yuzu fruit and the diameters of this spot was 8.3 mm. At 10 days after introduction, this spot changed into milky-white with 9.2 mm diameters. One concave spot has contained oil cells by 17.7 and its external appearances has unchanged until harvest. The kinds of piercing pests of yuzu fruit were investigated with 3 orders, 16 families and 37 species. These pests were classified by 11 species of bugs, 5 species of hoppers and 21 species of moths. Among them, dominant species were Physopelta gutta, Halyamorpha halys, Empoasca vitis, Aedia leucomelas, Agrotis tokionis, etc. Macroglossum bombylans and Acherontia s쇼x are newly confirmed species as the fruit piercing moths in Korea.

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DNA Barcode Examination of Bryozoa (Class: Gymnolaemata) in Korean Seawater

  • Lee, Hyun-Jung;Kwan, Ye-Seul;Kong, So-Ra;Min, Bum-Sik;Seo, Ji-Eun;Won, Yong-Jin
    • Animal Systematics, Evolution and Diversity
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    • v.27 no.2
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    • pp.159-163
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    • 2011
  • DNA barcoding of Bryozoa or "moss animals" has hardly advanced and lacks reference sequences for correct species identification. To date only a small number of cytochrome c oxidase subunit I (COI) sequences from 82 bryozoan species have been deposited in the National Center for Biotechnology Information (NCBI) GenBank and Barcode of Life Data Systems (BOLD). We here report COI data from 53 individual samples of 29 bryozoan species collected from Korean seawater. To our knowledge this is the single largest gathering of COI barcode data of bryozoans to date. The average genetic divergence was estimated as 23.3% among species of the same genus, 25% among genera of the same family, and 1.7% at intraspecific level with a few rare exceptions having a large difference, indicating a possibility of presence of cryptic species. Our data show that COI is a very appropriate marker for species identification of bryozoans, but does not provide enough phylogenetic information at higher taxonomic ranks. Greater effort involving larger taxon sampling for the barcode analyses is needed for bryozoan taxonomy.

Species Identification and Noise Cancellation Using Volume Backscattering Strength Difference of Multi-Frequency (다중 주파술의 체적산란강도 차이를 이용한 에코그램 내에서의 종 분리와 잡음 제거)

  • KANG Donhyug;SHIN Hyoung-Chul;KIM Suam;LEE Yoonho;HWANG Doojin
    • Korean Journal of Fisheries and Aquatic Sciences
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    • v.36 no.5
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    • pp.541-548
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    • 2003
  • Species identification in hydroacoustic survey is one of the key requirements to estimate biomass of organism and to understand the structure of zooplankton community. Feasibility of species identification using two frequencies (38 and 120 kHz) was investigated on the basis of mean volume backscattering strength difference (MVBS). Virtual echogram technique was applied to two frequencies data sets that obtained from surveys in the Antarctic Ocean and Yellow Sea. Virtual echogram method using MVBS revealed the possibility of species identification, which species identification relying on visual scrutiny of single frequency acoustic data resulted in significant errors in biomass estimation. Through noise cancellation using MVBS, much of the acoustic noise caused by acoustic instruments could be removed in new virtual echogram, and the biomass estimation and data quality was improved.

Metacyclops woni n. sp., a New Cyclopoid Species (Copepoda: Cyclopoida: Cyclopidae) from Cambodia

  • Lee, Jimin;Chang, Cheon Young
    • Animal Systematics, Evolution and Diversity
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    • v.31 no.4
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    • pp.247-256
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    • 2015
  • A new cyclopoid species belonging to the genus Metacyclops Kiefer, 1927 is described, based upon the specimens from a temporary pool in a forest of Mt. Phnom Domnak Dambouk, situated in the southwestern part of Cambodia. Metacyclops woni sp. nov. is characterized by its quite short caudal rami, about 2.5 times longer than wide, with a spinule row on anterior quarter of lateral margin. This new species belongs to the species group with the spine formula 3,4,4,3 of swimming legs 1-4. Among the members of the species group with the combination of characters of 11-segmented antennule and a single apical spine on the second endopodal segment of leg 4, it most resembles M. deserticus Mercado-Salas and Suárez-Morales, 2013 from Mexico in carrying an outermost caudal seta slightly longer than the innermost caudal seta and an apical spine on the second endopodal segment of leg 4 slightly shorter than the segment. However, it differs clearly from the present new species by much longer caudal rami with lateral caudal seta at nearly halfway of lateral margin of the ramus and smooth posterior margin of intercoxal sclerites of legs 1-4. This is the first record of the genus Metacyclops from Cambodia and the fourth one from Southeast Asia.

First report of Ernogrammus zhirmunskii Markevich & Kharin, 2011 (Perciformes: Stichaeidae) in Dokdo, Korea

  • Myoung, Se Hun;Woo, Min-Su;Min, Won Gi;Park, Joo Myun
    • Fisheries and Aquatic Sciences
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    • v.25 no.9
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    • pp.489-497
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    • 2022
  • The first specimen (54.8 mm standard length) of Ernogrammus zhirmunskii Markevich & Kharin, 2011, belonging to the family Stichaeidae, was recorded in Dokdo, East Sea, Korea on July 26, 2021. This species was characterized by a single ventral lateral-line canal from the posterior margin of the pelvic-fin base extending to the anus and one or two rigid spines on the posterior part of the anal fin. This species is similar to Ernogrammus hexagrammus and Ernogrammus walkeri but differs in the number of ventral lateral-line canal present, with E. zhirmunskii consisting of one (unpaired) ventral lateral-line canal compared to other two Ernogrammus species, which have a pair of parallel ventral lateral-line canal. For further analysis of species identification, a partial gene sequence from the mitochondrial DNA cytochrome oxidase subunit I (554 bp) of E. zhirmunskii was obtained for the first time. This study documents the first record of E. zhirmunskii in Korean waters and proposes the new Korean name of 'Il-gob-julbe-do-la-chi' for the species.

New record of Pleuronema marinum Dujardin, 1841 (Protozoa, Ciliophora) from South Korea

  • Jeong Hyeon, Yeo;Ji Hye, Choi;Atef, Omar;Jae-Ho, Jung
    • Journal of Species Research
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    • v.11 no.4
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    • pp.278-286
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    • 2022
  • During a field survey of Korean marine ciliates, we collected Pleuronema marinum from a brackish water sample. It is characterized by the presence of a contractile vacuole in mid-body, rather than the subterminal/ terminal contractile vacuole as in other congeners. The cells were examined in vivo and based on protargol and 'wet' silver nitrate impregnation. In addition, the nuclear 18S rRNA gene was sequenced using a single cell. The Korean population morphologically and molecularly resembles a Chinese population of P. marinum. Historical review of the species concludes that 1) two or more species have been assigned into P. marinum, 2) the position of contractile vacuole (e.g., in mid-body) is a valid character state, and 3) P. marinum is probably a rare species. Here we provide a monographic treatment of P. marinum to clarify the issue and for further studies of relevant species. Considering there are about 40 nominal species and complex nomenclatural acts in the genus Pleuronema, further studies should provide descriptions based on protargol and 'wet' silver impregnation with marker gene(s).

Studies on the Effect of K2O Fertilization for the Pasture Improvement (Part I) (초지개량(草地改良)에 미치는 가리시비(加里施肥)의 효과(效果)에 관(關)한 연구(硏究)(제(第) I 보(報)))

  • Kwon, Soon-Ki;Kim, Yong-Kook;Kim, Moon-Kyu
    • Korean Journal of Agricultural Science
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    • v.6 no.2
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    • pp.112-118
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    • 1979
  • This experiment was carried out to evaluate the effect of potassium application level for pasture management in Chungnam area. The results obtained were as follows. 1. The seedling establishment of pasture species was slightly depressed by high potassium application. 2. By increasing potassium application level, the winter hardiness of pasture species increased. 3. The forage yield of pasture species was more increased in legume single seeding than grass single and mixed seeding by higher potassium application. 4. The $K_2O$ content in forage was increased markedly by increasing potassium application level on grass single block. 5. The results obtained from this experiment indicated that potassium application level much effective on the winter hardiness of pasture species and forage yield specially in legume single seeding and adequate amount of potassium would be 20kg per 10a in this area.

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