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Complete Chloroplast Genome Sequence of Dumortiera hirsuta

  • Kwon, Woochan;Kim, Yongsung;Park, Jongsun
    • Proceedings of the Plant Resources Society of Korea Conference
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    • 2018.04a
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    • pp.43-43
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    • 2018
  • Dumortiera hirsuta (Sw.) Nees (Dumortieraceae) is a thallose liverwort distributed in tropics and subtropics. It is the only species in family Dumortieraceae, which is the second basal family in order Marchantiales. D. hirsuta is characterized by hairy receptacles and lacking air chamber. The complete chloroplast genome of D. hirsuta was successfully rescued from raw reads generated by HiSeq4000. Its total length is 122,050 bp consisting of four regions: large single copy (LSC) region (81,697 bp), small single copy (SSC) region (20,061 bp), and two inverted repeats (IRs; 10,146 bp per each). It contained 129 genes (84 coding DNA sequence (CDS), eight rRNAs, and 37 tRNAs); 18 genes including four rRNAs, and five tRNAs are duplicated in the IR regions. The overall GC content of D. hirsuta is 28.7%, which is almost same to that of Marchantia paleacea. Phylogenetic tree based on all genes from whole chloroplast genomes will provides phylogenetic position of D. hirstua. This sequence will be an fundamental resources for further researches of order Marchantiales.

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A Study on the Buckling in Fillet Welds of Sheets (박판 필릿용접구조물의 좌굴변형에 관한 연구)

  • Chu, Hwan-Su;Cho, Sang-Myung
    • Journal of Welding and Joining
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    • v.27 no.3
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    • pp.60-66
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    • 2009
  • The structures distorted by welding have to be corrected. Since the correcting work needs a lot of costs and time, it is very important to minimize the buckling distortion due to welding of thin plate structure. Therefore the aim of this study is to investigate the effect of single bead on plate welding and fillet welding on the buckling distortion. In the single bead on plate welding, it was found that the welding speed and welding sequence were the most dominant factors on distortion. In the fillet welding, there were four typical buckling modes observed, and the welding sequence was the most influential factor on the buckling distortion. However typical distortion measuring method is not considered for the distortion correcting process costs of each buckling modes, therefore, in this study, the measuring method is developed to classify the buckling modes for torsion of specimen and buckling distortion depend on nodal point for the bead on plate welding specimen and fillet welds.

Performance of a Modified Multicarrier Direct Sequence CDMA System

  • Lee, Dong-Wook;Lee, Hun;Kim, Jin-Su
    • ETRI Journal
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    • v.19 no.1
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    • pp.1-12
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    • 1997
  • In this paper, we present an improved multicarrier direct sequence (DS) code division multiple access (CDMA) scheme by modifying the system originally proposed by Kondo and Milstein [13]. In this modified system, different spreading sequences multiplied by a data sequence modulate different carriers. This is to prevent the multiple access capability from reducing when the fading characteristics of different carrier frequencies are highly correlated. We have derived a formula which determines the mean values of the relative received signal strength in a single carrier DS CDMA rake system and in a multicarrier DS-CDMA system. We present results on the comparison of the bit error rate (BER) performance of the two systems including the effect of correlation between fading characteristics of different frequencies under various multipath fading conditions. The results indicate that with 50 users the modified multicarrier DS CDMA system can achieve an uncoded irreducible BER of $1.7{\times}10^{-3}$ with an average received signal-to-noise ratio per bit of 10dB, which is better that $3.0{\times}10^{-3}$ achieved by the single carrier DS CDMA rake system, and also show that if multicarrier CDMA system is used with respect to single carrier CDMA system, the SNR gain is up to 4.5 dB for the uncode BER of $10^{-3}$ being achieved.

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Load-Balance-Independent High Efficiency Single-Inductor Multiple-Output (SIMO) DC-DC Converters

  • Ko, Younghun;Jang, Yeongshin;Han, Sok-Kyun;Lee, Sang-Gug
    • JSTS:Journal of Semiconductor Technology and Science
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    • v.14 no.3
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    • pp.300-312
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    • 2014
  • A single-inductor multiple-output (SIMO) DC-DC converter providing buck and boost outputs with a new switching sequence is presented. In the proposed switching sequence, which does not require any additional blocks, input energy is delivered to outputs continuously by flowing current through the inductor, which leads to high conversion efficiency regardless of the balance between the buck and boost output loads. Furthermore, instead of multiple output loop compensation, only the freewheeling current feedback loop is compensated, which minimizes the number of off-chip components and nullifies the need for the equivalent series resistance (ESR) of the output capacitor for loop compensation. Therefore, power conversion efficiency and output voltage ripples can be improved and minimized, respectively. Implemented in a 0.35-${\mu}m$ CMOS, the proposed SIMO DC-DC converter achieves high conversion efficiency regardless of the load balance between the two outputs with maximum efficiency reaching up to 82% under heavy loads.

Multi-Sequence Signaling Based Asynchronous Trellis-Coded DS/CDMA System (다중 시퀀스 시그날링에 기초한 비동기 트레리스 부호화 DS/CDMA 시스템)

  • Sangho Choe
    • The Journal of Korean Institute of Communications and Information Sciences
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    • v.29 no.3A
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    • pp.248-256
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    • 2004
  • Woerner had suggested an asynchronous trellis-coded DS/CDMA system based on a multi-sequence signaling, biorthogonal sequence, which is superior to single sequence signaling, such as M-ary PSK, due to their better cross-correlation properties. This paper analyzes and compares system performance between OPSM, a recently-presented multi-sequence signaling scheme, and biorthogonal sequence signaling. Interuser interference moments of the two schemes are derived and compared which verifies that OPSM, having smaller signature sequences per symbol than biorthogonal signaling, reduces cross-correlation. Numerical results compare the power and spectral efficiency of asynchronous trellis-coded DS/CDMA systems based on multi-sequence signaling.

The immediate effect of incorporating short-term slow abdominal respiration into an exercise program on balance and the autonomic nervous system

  • Han, Jaein;Chae, Yoona;Lee, Na-Kyung
    • Physical Therapy Rehabilitation Science
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    • v.8 no.4
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    • pp.225-233
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    • 2019
  • Objective: The purpose of this study was to examine the possible effects of incorporating short-term slow-abdominal respiration (SAR) into an exercise program, on balance and the cardiac-related autonomic nervous system (ANS). Design: Cross-over repeated measures design. Methods: Fifteen young and healthy adults were randomly assigned into two groups (7 in the C-R group, 8 in the R-C group), each of which carried out both control sequence (C) and respiration-experiment sequence (R) in the inverse order. In the C sequence, the subjects performed passive exercises and a general exercise program (P-GEP). In the R sequence, the subjects received a short-term SAR training session and then performed the respiration incorporated general exercises program (R-RGEP). Before and after both C and R sequences, the length and the area of the displacement of the center of pressure (COP) and heart rate variability parameters were measured. Results: The total length of the COP displacement in the left single-leg-standing condition showed a significantly greater reduction after R-RGEP in the respiration-experiment sequence than after the P-GEP in the control sequence (p<0.05). The mean heart rate was significantly reduced only after R-RGEP in the respiration-experiment sequence (p<0.05) Conclusions: The slow-abdominal-respiration, trained in a simple manner and integrated into the exercise program in a single session, showed partially positive immediate effects on balance stabilization. The decrease in heart rate indicated possible involvement of the parasympathetic ANS activation in the stability, although it is not enough to decide whether it is purely due to the controlled respiration.

Hybrid Lower-Dimensional Transformation for Similar Sequence Matching (유사 시퀀스 매칭을 위한 하이브리드 저차원 변환)

  • Moon, Yang-Sae;Kim, Jin-Ho
    • The KIPS Transactions:PartD
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    • v.15D no.1
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    • pp.31-40
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    • 2008
  • We generally use lower-dimensional transformations to convert high-dimensional sequences into low-dimensional points in similar sequence matching. These traditional transformations, however, show different characteristics in indexing performance by the type of time-series data. It means that the selection of lower-dimensional transformations makes a significant influence on the indexing performance in similar sequence matching. To solve this problem, in this paper we propose a hybrid approach that integrates multiple transformations and uses them in a single multidimensional index. We first propose a new notion of hybrid lower-dimensional transformation that exploits different lower-dimensional transformations for a sequence. We next define the hybrid distance to compute the distance between the transformed sequences. We then formally prove that the hybrid approach performs the similar sequence matching correctly. We also present the index building and the similar sequence matching algorithms that use the hybrid approach. Experimental results for various time-series data sets show that our hybrid approach outperforms the single transformation-based approach. These results indicate that the hybrid approach can be widely used for various time-series data with different characteristics.

Linear-Time Korean Morphological Analysis Using an Action-based Local Monotonic Attention Mechanism

  • Hwang, Hyunsun;Lee, Changki
    • ETRI Journal
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    • v.42 no.1
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    • pp.101-107
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    • 2020
  • For Korean language processing, morphological analysis is a critical component that requires extensive work. This morphological analysis can be conducted in an end-to-end manner without requiring a complicated feature design using a sequence-to-sequence model. However, the sequence-to-sequence model has a time complexity of O(n2) for an input length n when using the attention mechanism technique for high performance. In this study, we propose a linear-time Korean morphological analysis model using a local monotonic attention mechanism relying on monotonic alignment, which is a characteristic of Korean morphological analysis. The proposed model indicates an extreme improvement in a single threaded environment and a high morphometric F1-measure even for a hard attention model with the elimination of the attention mechanism formula.

PC-Based Hybrid Grid Computing for Huge Biological Data Processing

  • Cho, Wan-Sup;Kim, Tae-Kyung;Na, Jong-Hwa
    • Journal of the Korean Data and Information Science Society
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    • v.17 no.2
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    • pp.569-579
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    • 2006
  • Recently, the amount of genome sequence is increasing rapidly due to advanced computational techniques and experimental tools in the biological area. Sequence comparisons are very useful operations to predict the functions of the genes or proteins. However, it takes too much time to compare long sequence data and there are many research results for fast sequence comparisons. In this paper, we propose a hybrid grid system to improve the performance of the sequence comparisons based on the LanLinux system. Compared with conventional approaches, hybrid grid is easy to construct, maintain, and manage because there is no need to install SWs for every node. As a real experiment, we constructed an orthologous database for 89 prokaryotes just in a week under hybrid grid; note that it requires 33 weeks on a single computer.

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Heterogeneity of Chloroplast DNA in Rice (벼 엽록체 DNA의 이질성)

  • 남백희;문은표
    • Proceedings of the Botanical Society of Korea Conference
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    • 1987.07a
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    • pp.391-401
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    • 1987
  • Plant chloroplast DNA exists as an unique circular structure in which large single copy(LSC) region and small single copy (SSC) region are separated by large inverted repeat sequences (IRS). It has been known that the unique existence of inverted repeat sequences in chloroplast DNA has no relation with the stability of the chloroplast DNA, but causes the inversion between inverted repeat its biological significance has not been understood so far. In rice, several gene clusters have been cloned and sequenced which contain ribulose-5-biophosphate car-boxylase large subunit (rbcL). Especially, one rbcL gene is linked with rp12 gene which is located in the IRS region in one of the gene clusters. By comparison of nucleotide sequence, the two genes are found to be linked through 151 bp repeat sequence which is homologous to the rp123 gene in IRS region. The repeat sequence is found to be located 3' downstream of rfcL gene and near psbA gene in LSC region. The existence of these repeat sequences and the presence of gene clusters caused by the gene rearrangement thorough the repeat sequence provide a possible which is found to be dispersed chloroplast DNA provide the model system to explaine the heterogeneity of the chloroplast DNA in rice in term of gene rearrangement.

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