• KIPS Transactions on Software and Data Engineering
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• v.8 no.10
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• pp.421-426
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• 2019

In this paper, we propose a method to visualize the geometric features of the contact region between proteins in a protein complex. When proteins or ligands are represented as curved surfaces with irregularities, the property that the two surfaces contact each other without intersections is called shape compatibility. Protein-Protein or Protein-Ligand docking researches have shown that shape complementarity, chemical properties, and entropy play an important role in finding contact regions. Usually, after finding a region with high shape complementarity, we can predict the contact region by using residual polarity and hydrophobicity of amino acids belonging to this region. In the research for predicting the contact region, it is necessary to investigate the geometrical features of the contact region in known protein complexes. For this purpose, it is essential to visualize the geometric features of the molecular surface. In this paper, we propose a method to find the contact region, and visualize the geometric features of it as normal vectors and mean curvatures of the protein complex.

• Geomechanics and Engineering
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• v.23 no.5
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• pp.455-466
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• 2020

This paper presents analysis of the interaction between tunnel and Qanat with a particular interest for the optimization of Qanat shape using the discrete element code, PFC2D, and the results will be compared with the FEM results of PLAXIS2D. For these concerns, using software PFC2D based on Discrete Element Method (DEM), a model with dimension of 100m ^⁎ 100 m was prepared. A circular tunnel with dimension of 9 m was situated 20 m below the ground surface. Also one Qanat was situated perpendicularly above the tunnel roof. Distance between Qanat center and ground surface was 8 m. Five different shapes for Qanat were selected i.e., square, semi-circular, vertical ellipse, circular and horizontal ellipse. Confining pressure of 5 MPa was applied to the model. The vertical displacement of balls situated in ground surface was picked up to measure the ground subsidence. Also two measuring circles were situated at the tunnel roof and at the Qanat roof to check the vertical displacements. The properties of the alluvial soil of Tehran city are: γ_dry=19 (KN/㎥), E= 750 (kg/㎠), ν=0.35, c=0.3(kg/㎠), φ=34°. In order to validate the DEM results, a comparison between the numerical results (obtained in this study) and analytical and field monitoring have been done. The PFC2D results are compared with the FEM results. The results shows that when Qanat has rectangular shape, the tensile stress concentration at the Qanat corners has maximum value while it has minimum value for vertical ellipse shape. The ground subsidence for Qanat rectangular shape has maximum value while it has minimum value for ellipse shape of Qanat. The vertical displacements at the tunnel roof for Qanat rectangular shape has maximum value while it has minimum value for ellipse shape of Qanat. Historical shape of Qante approved the finding of this research.

• Proceedings of the Computational Structural Engineering Institute Conference
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• 2002.04a
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• pp.123-130
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• 2002

A general formulation for shape design sensitivity analysis over three dimensional beam structure is developed based on a variational formulation of the beam in linear elasticity. Sensitivity formula is derived based on variational equations in cartesian coordinates using the material derivative concept and adjoint variable method for the displacement and Von-Mises stress functionals. Shape variation is considered for the beam shape in general 3-dimensional direction as well as for the orientation angle of the beam cross section. In the sensitivity expression, the end points evaluation at each beam segment is added to the integral formula, which are summed over the entire structure. The sensitivity formula can be evaluated with generality and ease even by employing piecewise linear design velocity field despite the bending model is fourth order differential equation. For the numerical implementation, commercial software ANSYS is used as analysis tool for the primal and adjoint analysis. Once the design variable set is defined using ANSYS language, shape and orientation variation vector at each node is generated by making finite difference to the shape with respect to each design parameter, and is used for the computation of sensitivity formula. Several numerical examples are taken to show the advantage of the method, in which the accuracy of the sensitivity is evaluated. The results are found excellent even by employing a simple linear function for the design velocity evaluation. Shape optimization is carried out for the geometric design of an archgrid and tilted bridge, which is to minimize maximum stress over the structure while maintaining constant weight. In conclusion, the proposed formulation is a useful and easy tool in finding optimum shape in a variety of the spatial frame structures.

• Journal of the Ergonomics Society of Korea
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• v.34 no.2
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• pp.167-177
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• 2015

Objective: The objective of this research is to develop evaluation checklist for personal office furniture and apparatus to shape comfortable and efficient worksite for workers' welfare improvement, productivity enhancement and labor force preservation, and to identify office work environment by applying the checklist. Background: Because most office workers work using computers in a sitting posture, the ratio of office workers among total musculoskeletal disorders patients is forecast to increase. In this regard, an effort to prevent and manage such musculoskeletal disorders is required. Method: This research developed evaluation checklist for personal office furniture and apparatus by examining 25 domestic and international ergonomic literature and anthropometric data. This research carried out a fact-finding survey targeting the A Office and B Office of one public agency using the checklist. Results: Although, the checklist items on desks, chairs, computers and other goods conformed to the checklist standards, the following items did not conformed: desk height adjustment, seat board depth adjustment, lumbar support depth, foot rest, wrist rest, mouse tray, headset, speaker phone and Bluetooth. Conclusion: The evaluation checklist for personal office furniture and apparatus and fact-finding survey results are considered to be used as basic data for office work environment and workers' welfare improvement. Application: The information drawn from this research can be helpful to manufacturers' design and manufacture of ergonomic furniture and apparatus.

• Journal of Powder Materials
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• v.22 no.1
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• pp.1-5
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• 2015

Powder injection molding is an important manufacturing technology to mass produce superalloy components with complex shape. Injection molding step is particularly important for realizing a desired shape, which requires much time and efforts finding the optimum process condition. Therefore computer aided engineering can be very useful to find proper injection molding conditions. In this study, we have conducted a finite element method based simulation for the spiral mold test of superalloy feedstock and compared the results with experimental ones. Sensitivity analysis with both of simulation and experiment reveals that the melt temperature of superalloy feedstock is the most important factor for the full filling of mold cavity. The FEM based simulation matches well the experimental results. This study contributes to the optimization of superalloy powder injection molding process.

• Proceedings of the Computational Structural Engineering Institute Conference
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• 1994.04a
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• pp.57-64
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• 1994

The purpose of this paper is to find minimum surface shape of pneumatic structure using the finite element method. The pneumatic membrane structure is a kind of large deformation problem and very flexible composite material, which mean geomatric nonlinearity. It is not to resist for compression and resultant moment. As the displacement due to internal pressure is getting bigger, it should be considered the direction of forces. It becomes non-linear problem with the non-conservative force. The follower-force depends on the deformation and the direction of force is normal to each element. The solution process is obtained the new stiffness matrix (load correction matrix) depending on deformation through each iterated step. However, the stiffness matrix have not the symmetry and influence on the time of covergence. So in this paper Newton-Rhapson method for solving non-linear problem and for using symmetic matrix, the load direction is changed in each iterated step using the transformation matrix.

• Journal of the Korean Institute of Telematics and Electronics B
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• v.33B no.3
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• pp.79-87
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• 1996

A new method for recognizing and locating partially occluded or overlapped two-dimensional objects regardless of their size, translation, and rotation, is presented. Dominant points approximating occuluding contoures of objects are generated by finding local maxima of smoothed k-cosine function, and then used to guide the contour segment matching procedure. Primitives between the dominant points are produced by projecting the local contours onto the line between the dominant points. Robust classification of primitives. Which is crucial for reliable partial shape matching, is performed using adaptive resonance theory (ART2). The matched primitives having similar scale factors and rotation angles are detected in the hough space to identify the presence of the given model in the object scene. Finally the translation vector is estimated by minimizing the mean squred error of the matched contur segment pairs. This model-based matching algorithm may be used in diveerse factory automation applications since models can be added or changed simply by training ART2 adaptively without modifying the matching algorithm.

• Journal of the Korean Institute of Telematics and Electronics C
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• v.34C no.9
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• pp.84-101
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• 1997

Inferring and recognizing 3D objects form a 2D occuluded image has been an important research area of computer vision. The octree model, a hierarchical volume description of 3D objects, may be utilized to generate projected images from arbitrary viewing directions, thereby providing an efficient means of the data base for 3D object recognition. We present a fast algorithm of finding the 4 pairs of feature points to estimate the viewing direction. The method is based on matching the object contour to the reference occuluded shapes of 49 viewing directions. The initially best matched viewing direction is calibrated by searching for the 4 pairs of feature points between the input image and the image projected along the estimated viewing direction. Then the input shape is recognized by matching to the projectd shape. The computational complexity of the proposed method is shown to be O(n$^{2}$) in the worst case, and that of the simple combinatorial method is O(m$^{4}$.n$^{4}$) where m and n denote the number of feature points of the 3D model object and the 2D object respectively.

• Proceedings of the Korean Society of Precision Engineering Conference
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• 1997.10a
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• pp.220-223
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• 1997

Moire topography method is a well-known non-contacting 3-D measuement method. Recently, the automatic 3-D measurement by moire topography has been required since the method was frequently applied to the engineering and medical fields. 3-D measurement using projection moire topography is very attractive because of it's high measuring speed and high sensitivity. In this paper, using two-wavelength method of projection moire topography tested to measuring object with the 2x-ambiguity problem. Experimental results prove that the proposed scheme is capable of finding absolute fringe orders, so that the 2x-ambiguity problem can be effectively overcome so as to treat large step discontinuities in measured objects.

• Proceedings of the Korean Society of Machine Tool Engineers Conference
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• 1996.10a
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• pp.75-78
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• 1996

End Milling is avilable for machining the variable shape of products and has been widely applicated in many industries. To manufacture precise products a surface roughness has to be noticable as a improtant parameter. In end milling the research for tool wear has been insufficient because the tool shape and the cutting geometry are complicated. In this paper the pattern of endmill wear is investigated and the machinability is evaluated. As finding out the characteristics of cutting force and surface roughness the effect of endmill wear on machinability is investigated.