• Journal of Genetic Medicine
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• 제2권1호
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• pp.35-39
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• 1998

Duchenne/Becker muscular dystrophy are the major neuromuscular disorders with X-linked recessive inheritance. Preimplantation diagnosis of sex determination has been generally used to avoid male pregnancies with these diseases. However, in order to determine if the embryo is normal, carrier or affected regardless of the sex, there is a need for a combined analysis of specific exon on dystrophin gene as well as sex determination of embryo using the same biopsied blastomere. If the exon deletion is not determinable, further diagnosis of carrier or patient can be performed by haplotype analysis. In this study, we applied the primer extension preamplification (PEP) method, which amplifies the whole genome, in 40 cases of single amniocyte and 40 cases of chorionic villus cell. We analysed haplotypes using two (CA)n dinucleotide polymorphic markers located at the end of 5' and 3' region of the dystrophin gene. Exon 46 of dystrophin gene and DYZ3 on chromosome Y were chosen as a target sequence for coamplification PCR. Upon optimizing the conditions, the amplification rates were 91.25% (73/80) for haplotypes (92.5% in amniocyte, 90% in chorionic villus cell) and 88.75% (71/80) for coamplification (85% in amniocyte, 92.5% in chorionic villus cell). The result of the study indicates that haplotypes analysis and coamplification of dystrophin and Y-specific gene using PEP can be applied to prenatal and preimplantation diagnosis in Duchenne/Becker muscular dystrophy making it possible to determine if the fetus is a carrier or an affected one.

• Asian-Australasian Journal of Animal Sciences
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• 제27권10호
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• pp.1411-1416
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• 2014

Gender selection is important in livestock industries; for example, female calves are required in the dairy industry. Sex-sorted semen is commonly used for the production of calves of the desired gender. However, assessment of the sex ratio of the sorted semen is tedious and expensive. In this study, a rapid, cost effective and reliable method for determining the sex ratio was developed using a multiplex real-time polymerase chain reaction (PCR) assay. In this assay, the X and Y chromosome-specific markers, i.e., bovine proteolipid protein (PLP) gene and sex-determining region Y (SRY) were simultaneously quantified in a single tube. The multiplex real-time PCR assay was shown to have high amplification efficiencies (97% to 99%) comparable to the separated-tube simplex real-time PCR assay. The results obtained from both assays were not significantly different (p>0.05). The multiplex assay was validated using reference DNA of known X ratio (10%, 50%, and 90%) as templates. The measured %X in semen samples were the same within 95% confidence intervals as the expected values, i.e., >90% in X-sorted semen, <10% in Y-sorted semen and close to 50% in the unsorted semen. The multiplex real-time PCR assay as shown in this study can thus be used to assess purity of sex-sorted semen.

• Plant Biotechnology Reports
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• 제2권4호
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• pp.239-243
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• 2008

Simmondsia chinensis (Link) Schneider, a multipurpose and monogeneric dioecious shrub from arid zones, has emerged as a cash crop all over the globe. Its seed propagation poses severe problems due to its male-biased population: the male:female ratio is 5:1. Investigations have been carried out to generate a sex-specific Inter-simple sequence repeat (ISSR) marker for the early detection of male and female plants. Of the 42 primers analysed with a bulk sample of pooled male DNA and a bulk sample of pooled female DNA, only one primer, UBC-807, produced a unique ~1,200 base-pair fragment in the male DNA. To validate this observation, this primer was re-tested with individual male and female samples from eight cultivars. A similar unique ~1,200 bp fragment was present in the male individuals of all eight cultivars and completely absent in the female individuals tested. This is the first report of the use of ISSR markers to ascertain sex in physiologically mature S. chinensis plants.

• 한국산림과학회지
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• 제105권4호
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• pp.422-428
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• 2016

은행나무는 이식성이 좋고 열악한 환경에서도 잘 자라기 때문에 도심 가로수나 조경수로 매우 적합한 수종이다. 은행나무는 암수딴그루 식물로 수나무와 암나무의 생식기관(수꽃과 암꽃)의 비교를 통하여 성을 식별할 수 있으나, 꽃이 달리기까지 약 20년 이상이 필요하다. 가로수용 은행나무는 주로 꽃이 생성되기 이전에 식재되기 때문에 암나무와 수나무 구분 없이 가로수로 식재되어왔다. 가로수로 식재된 암나무에서 열리는 은행나무 열매는 악취를 발산하고 거리 오염을 야기하고 있다. 따라서 본 연구에서는 유시에 수나무를 선별하기 위하여 기존에 보고된 수나무 특이 RAPD 변이체의 염기서열을 기반으로 수나무에서만 675 bp의 PCR 산물을 증폭하는 SCAR 마커(SCAR-GBM)를 개발하였다. SCAR-GBM 마커의 우성 마커 특성에 기인한 위음성(false-negative)문제를 해결하고 식별 효율을 향상시키기 위하여 SCAR-GBM 마커와 mtDNA의 atp1 영역을 증폭하는 범용 프라이머를 동시에 적용하는 multiplex PCR을 이용하였다. 그 결과 암나무와 수나무에서 공히 atp1 영역에 해당하는 1,039 bp의 PCR 산물이 증폭되었으며, 수나무에서만 특이적으로 SCAR-GBM 마커가 증폭되었다. 전국 8개 지역에서 채취된 암나무와 수나무 각 80개체에 대한 분석을 통하여 SCAR-GBM 마커와 multiplex PCR 방법의 재현성이 확인되었다.

• Journal of Korean Neurosurgical Society
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• 제65권6호
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• pp.834-840
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• 2022

Objective : C-reactive protein (CRP) level, erythrocyte sedimentation rate (ESR), and white blood cell (WBC) count are inflammatory markers used to evaluate postoperative infections. Although these markers are non-specific, understanding their normal kinetics after surgery may be helpful in the early detection of postoperative infections. To compliment the recent trend of reducing the duration of antibiotic use, this retrospective study investigated the inflammatory markers of patients who had received antibiotics within 24 hours after surgery according to the Health Insurance Review & Assessment Service guidelines and compared them with those of patients who had received antibiotics for 5 days, which was proven to be non-infectious. Methods : We enrolled 74 patients, divided into two groups. Patients underwent posterior lumbar interbody fusion (PLIF) at a single institution between 2019 and 2020. Group A included 37 patients who received antibiotics within 24 hours after the PLIF procedure, and group B comprised 37 patients who had used antibiotics for 5 days. A 1 : 1 nearest-neighbor propensity-matched analysis was used. The clinical variables included age, sex, medical history, body mass index, estimated blood loss, and operation time. Laboratory data included CRP, ESR, and WBC, which were measured preoperatively and on postoperative days (POD) 1, 3, 5, and 7. Results : CRP dynamics tended to decrease after peaking on POD 3, with a similar trend in both groups. The average CRP level in group B was slightly higher than that in group A; however, the difference was not statistically significant. Multiple linear regression analysis revealed operation time, number of fused levels, and estimated blood loss as significant predictors of a greater CRP peak value (r²=0.473, p<0.001) in patients. No trend (a tendency to decrease from the peak value) could be determined for ESR and WBC count on POD 7. Conclusion : Although slight differences were observed in numerical values and kinetics, sequential changes in inflammatory markers according to the duration of antibiotic administration showed similar patterns. Knowledge of CRP kinetics allows the assessment of the degree of difference between the clinical and expected values.

• 한국수정란이식학회지
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• 제32권3호
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• pp.193-200
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• 2017

The purpose of this study is to confirm whether spontaneous adipocyte generation during chondrogenic induction culture affects the chondrogenic differentiation of porcine skin-derived stem cells (pSSCs). For this purpose, chondrogenic differentiation characteristics and specific marker gene expression were analyzed using cell lines showing different characteristics of spontaneous adipocyte formation. Of the four different lines of pSSCs, the pSSCs-IV line showed higher Oil red O (ORO) and glycosaminoglycan (GAG) extraction levels. Quantitative real-time polymerase chain reaction (qRT-PCR) analysis revealed that the levels of adipogenic markers peroxisome proliferator-activated receptor gamma 2 ($PPAR{\gamma}2$) and adipocyte Protein 2 (aP2) mRNAs were significantly higher in pSSCs-IV than those of the other pSSC lines (P<0.05). Among three chondrogenic markers, collagen type II (Col II) and sex determining region Y-box (Sox9) mRNAs were strongly expressed in pSSCs-IV (P<0.05), but not in aggrecan (Agg), which was significantly higher in pSSCs-II (P<0.05). These results demonstrate that the spontaneous adipocyte generation during chondrogenic differentiation has a positive effect on the chondrogenesis of pSSCs. More research is needed on the correlation between adipocyte generation and cartilage formation.

• 대한예방의학회:학술대회논문집
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• 대한예방의학회 1999년도 제51차 추계 학술대회 연제집
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• pp.1-15
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• 1999

In a case-control study to evaluate the factors involved in the development of hepatocellular carcinoma, polymorphisms of the p53 gene were compared in 68 cases mostly infected with hepatitis C virus (HCV) and 68 controls matched for sex and age: DNA from peripheral blood leukocytes was analyzed by the polymerase chain reaction-single strand conformation polymorphism method and direct sequencing. Polymorphisms analyzed were those in exon 4 (CCC vs. CGC, Pro vs. Arg at codon 72, Al allele vs. A2 allele), intron 2 (C vs. G at nucleotide 38, Al vs. A2), intron 3 (C vs. A at nucleotide 65, Al vs. A2; absence and presence of 16 base pair repeat at nucleotides 24 to 39, Al vs. A2), intron 6 (A vs. G at nucleotide 62, Al vs. A2) and intron 7 (C and T vs. T and G at nucleotides 72 and 92, Al vs. A2). A significantly higher frequency of the allele for CCC (Pro, Al) at codon 72 of exon 4 was found in cases (39%) than in controls (26%) (p<0.05). Highly significant linkage of the polymorphisms in exon 4, intron 2, intron 3 and intron 7, and between the intron 3-16 bp duplication and polymorphism in intron 6 also was found. Matched Fair analysis showed significantly higher frequencies of certain haplotypes (1-1-1-1-2-2 or 1-1-2-1-2-1 for exon 4, intron 2, intron 3, the intron 3-16 bp duplication, intron 6 and intron 7) in cases than in controls (p=0.014, OR=2.27, 95% CI= 1.08-5.12). No preference of specific p53 polymorphisms for specific HCV genotype was detected. These findings suggest that in hepatocarcinogenesis mainly due to HCV infection, genetic factors may be involved and that genetic markers can serve as predictors of a high-risk group for hepatocarcinogenesis.

• Asian Pacific Journal of Cancer Prevention
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• 제16권17호
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• pp.7875-7882
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• 2015

Background: The objectives of this study were to evaluate the expression of brain and acute leukemia, cytoplasmic (BAALC) gene and erythroblast transformation-specific related gene (ERG) in de novo cases of acute myeloid leukemia (AML) and identify roles in disease progression and outcome. Materials and Methods: This study included 50 newly diagnosed AML patients, along with 10 apparently healthy normal controls. BAALC and ERG expression was detected in the bone marrow of both patients and controls using real-time RT-PCR. Results: BAALC and ERG expression was detected in 52% of cases but not in any controls. There was a statistically significant correlation between BAALC and ERG gene expression and age (p-value=0.004 and 0.019, respectively). No statistical significance was noted for sex, lymphadenopathy, hepatomegaly, splenomegaly, other hematological findings, immunophenotyping and FAB sub-classification except for ERG gene and FAB (p-value=0.058). A statistical significant correlation was found between response to treatment with ERG expression (p-value=0.028) and age (p-value=0.014). A statistically significant variation in overall survival was evident with patient age, BM blast cells, FAB subgroups, BAALC and ERG expression (p-value=<0.001, 0.045, 0.041, <0.008 and 0.025 respectively). Conclusions: Our results suggest that BAALC and ERG genes are specific significant molecular markers in AML disease progression, response to treatment and survival.

• 한국가금학회지
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• 제51권2호
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• pp.117-125
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• 2024

본 연구는 조우성과 만우성 닭을 식별하기 위한 유전자 마커를 발굴하고자 한 것으로 만우성과 관련된 ev21-K라는 새로운 좌위를 발견하고 이의 특성을 구명하였다. 더불어, 본 좌위의 유전적 전이 양상을 조사하여 자가 성감별 라인 조성의 이용 가능성도 살펴보았다. 본 시험을 위해 5개 품종의 닭 707수를 공시하고 이를 대상으로 유전자 마커 발굴 및 유전적 전이 시험을 수행하였다. ev21-K 특이 좌위 발굴은 깃털 발육과 연관된 ev21 유전자와 만우성 유전자인 K 유전자를 탐색하고 이들 간 염기서열을 비교 분석하여 획득하였다. 확인된 좌위의 분석을 위해 대상 서열에 대한 특정 프라이머를 제작하고 중합효소연쇄반응(PCR)을 수행하여 결과물을 획득한 후 이들의 염기 서열을 분석하였다. 발굴된 염기 서열의 유전적 전이 양상을 조사하기 위하여 조우성과 만우성 닭 간의 교배조합시험을 수행하였다. 시험결과, 발굴된 230 bp ev21-K 유전자 좌위를 ev21-related K specific sequences라 명명하였고, 이는 기존 ev21 유전자와 99%의 상동성을 나타내었다. PCR 분석을 통해 해당 서열이 만우성 닭에만 존재하는 것으로 확인되었다. 본 서열은 조직, 품종 및 연령에 관계없이 만우성 닭에만 존재하는 일관된 결과를 보여주었다. 교배 시험을 통하여 본 서열의 전이 양상을 살펴본 결과, 반성 유전을 하며 깃털 표현형과 일치하는 분리결과를 보였다. Ev21-related K specific sequences의 유전적전이 양상은 본 서열이 우성으로써 전형적인 멘델 유전에 따르는 것으로 나타났다. 결론적으로, ev21-K 특이 좌위의 새로운 서열은 품종에 관계없이 조우성과 만우성 닭을 식별하기 위한 신뢰할 수 있는 분자 마커로 확인되었다.

• Tuberculosis and Respiratory Diseases
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• 제42권2호
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• pp.142-148
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• 1995

연구배경: 최근의 제반 분자생물학적 기법의 발전이나 새로운 치료법 등에 관한 활발한 연구에도 불구하고 폐암의 5년생존율이 크게 나아지지 못하고 있으며, 또한 우리나라에서의 폐암의 발생 및 이로 인한 사망이 점차 증가하는 현실이다. 그러므로 치료효과 또는 생존율을 높일 수 있는 새로운 치료법의 개발과 이울러 제반 생물학적 성상을 이용한 예후판정 또는 치료경과의 예측을 위한 지표개발이 필요하다 하겠다. 이에 저자들은 몇가지 생물학적 표지자들이 폐암에서 예후인자로서 어떤 의미를 가지는지 알아보기 위하여 본 연구를 시작하였다. 방법: 비소세포폐암환자 46명으로부터 얻은 조직을 대상으로 단클론항체를 이용하여 PCNA, EGFR, p53, 혈액항원 A 등의 발현 여부를 비교적 간단한 면역조직화학법으로 검색하였다. 결과: 1) PCNA, EGFR, p53, 혈액항원 A 등의 발현은 각각 80.6%, 61.3%, 45.9%, 64.3%의 양성율을 나타냈으며, 세포형이나 병기에 따라서는 유의한 차이가 없었다. 2) 개개지표들의 예후인자로서의 유의성 검증에서 헬액항원 A의 발현은 중앙생존기간(24개월과 5개월) 및 2년 생존율(55.6%와 0%)에서 월등하게 좋은 예후를 나타내었으며, PCNA의 발현은 중앙생존기간(11개월과 30개월) 및 2년 생존율(36%와 100%)에서 매우 나쁜 예후를 나타내었다. 3) EGFR의 발현은 중앙생존기간(10개월과 30개월) 및 2년 생존율(36.8%와 66.7%)에서 나쁜 예후의 경향을 보이나 통계적 유의성은 없었고, p53의 발현은 양군에서 별차이가 없어 예후인자로서의 유의성은 없었다. 4) PCNA, EGFR, p53의 발현을 동시에 시행한 경우의 유의성 검증에서는 3가지 중 2가지 이상의 음성을 나타낸 군의 중앙생존기간(33개월) 및 2년 생존율(77.8%)이 2가지 이상의 양성을 나타낸 군의 중앙생존기간(9.5개월) 및 2년 생존율(36.4%)보다 유의하게 높았다. 결론: 이상의 결과로 비소세포폐암에서 PCNA의 발현은 나쁜 예후인자로서, 혈액항원 A의 발현은 좋은 예후인자로서의 의미를 가지며, PCNA, EGFR, p53을 동시에 시행하여 2가지 이상의 양성발현 또한 나쁜 예후인자로 사료되므로 이들을 이용한 예후판정의 가능성이 제시된다 하겠다.