• Journal of Plant Biotechnology
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• 제39권1호
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• pp.75-80
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• 2012

$Kalopanax$ $pictus$ is a long-lived deciduous perennial tree in the family Araliaceae mainly distributed in the East Asia. In Korea, this species is of ecological and medical importance. Because typical populations of this species are small and distributed in patches, $K.$ $pictus$ has been considered as a narrow habitat species. To understand the genetic diversity and population structure of this species, the sequence variation of the nuclear ribosomal DNA (nrDNA) internal transcribed spacer (ITS) region was analyzed among 18 different $K.$ $pictus$ populations in the present investigation. The nrDNA ITS sequences of Korean populations investigated in this study showed identical of 616 bp in length, and no any nucleotide variation was found in the entire nrDNA ITS region sequence. This result suggested that the $K.$ $pictus$ populations in Korea might belong to the same isolate, and no mutation was found in the nrDNA ITS region. Compared with other known ITS sequence sources from $K.$ $pictus$ populations, only four variable nucleotide sites were found within the entire ITS region. Very narrow genetic diversity appearing in the population level of $K.$ $pictus$ makes us hypothesize that their relatively isolated habitats. The long-lived traits might be one main reason. However, another probability was that the nr-DNA ITS region might be noneffective in classifying populations of $K.$ $pictus$. Thus, to further understand the phylogenetic relationship of $K.$ $pictus$ populations, more samplings should be performed based on more DNA sequences.

• Animal Systematics, Evolution and Diversity
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• 제11권2호
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• pp.235-242
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• 1995

한국 두 지역의 참굴(CRassostrea gigas Thunberg) 과 일본산 참굴, 그리고 한국산 바위굴(Crassostrea nippona Seki)의 유전적 근연관계를 조사하기 위하여 미토콘드리아 DNA 절편분석을 하였다. 참굴의 전체 미토콘드리아 DNA 크기는 세 지역 모두 약 18 kb 로서 동일하였으나 한국 동해산 바위굴의 경우는 약 22 kb 정도의 크기를 나타내었다. 여섯 개 염기쌍을 인식하는 8종류의 제한효소를 사용하여 분석한 결과 세 지역 참굴의 mtDNA에서 BamHI과 Bg1I 그리고 XhoI 절단시 동일한 DNA 절편이 나타나는 특징이 있었다. 종내 지역간 염기서열 치환율 (p) 은 남해안과 서해안산 참굴에서 2%로 가장 가까운 근연관계를 보였으며, 이들과 일본산 참굴 사이에는 5%의 p값을 보였다. 참굴과 바위굴, 두 종간에서는 약 42% 의 염기서열 치환율을 갖는 근연관계를 나타내었다.

• Animal cells and systems
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• 제3권1호
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• pp.89-96
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• 1999

Nucleotide sequences of a 501 base-pair (bp) fragment in the mitochondrial cytochrome b (cyt b) gene were analyzed for 12 populations of Rana rugosa from Korea and Japan using a polymerase chain reaction (PCR) and direct silver sequencing. Two genetically distinct groups (type-A and type-B) were found in Korea. Type-A was found throughout most of South Korea and type-B was restricted to the mid-southeastern regions (Samchok, Yongdok, Chongsong and Pohang). But in the Tonghae population, both types were found. The level of mitochondrial DNA (mtDNA) sequence differences ranged from 0% to .0.8% among six populations of type-A, and 0 to 1.0% among 4 populations of type-B. However, sequence differences between type-A and type-B ranged from 5.4% to 6.6%, Using Kimura's two-parameter distance, the level of genetic sequence divergence between type-A and type-B was 6.7%. The Japanese R. rugosa was clustered very far from the Korean R. rugosa with 14.7%. In the neighbor-joining and UPGMA tree, all Korean samples were grouped, but subdivided into two types in 99% of the bootstrap iteration.

• 한국응용곤충학회지
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• 제50권4호
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• pp.325-333
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• 2011

기후변화에 따른 고도별 곤충의 유전 변이를 분석하고자 배추에서 복숭아혹진딧물(Myzus persicae)을 지표해충으로 변이 분석이 가능한 마커를 개발하고자 하였다. 즉, 지역의 기후가 변하면 유전자가 변동할 것이라는 가설 하에 실내에서 누대 사육된 계통을 비교집단으로 가정하고 횡성, 평창과 강릉 지역에서 고도별 5개 지역(157 m, 296 m, 560 m, 756 m, 932 m)에서 채집된 지역 집단간의 변이를 찾고자 하였다. 생태적 변이는 모든 집단에서 찾을 수가 없었고, 에스터레이즈 동위효소 분석 및 inter-simple sequence repeat (ISSR) PCR 결과에서 실내 사육 계통과 지역 집단간의 차이는 보였으나 지역 집단간의 큰 차이는 찾을 수가 없었다. 그러나 rRNA와 mtCO I 부분 염기서열을 분석하여 5개의 지역집단 내에서 internal transcribed spacer-2 (ITS-2) 와 mtCO I에 각각 한 개씩의 단일염기다형성(SNP)를 발견하였다. 이 SNP는 유전 변동 추적이 가능한 매우 유용한 마커로 사용 될 수 있다.

• Animal Systematics, Evolution and Diversity
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• 제39권2호
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• pp.61-66
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• 2023

Through a taxonomic study on solitary corals collected from subtidal zones of South and East Seas from 2019 to 2022, Paracyathus rotundatus, an unrecorded species belonging to family Caryophylliidae, is newly added to the anthozoan fauna of Korea. In addition, comparing partial 16S rRNA sequences with a length of 269 bp according to color variation clarified that there were no sequence differences among specimens with color variation, indicating that the color variation is due to intraspecific variation. As a result of this study, a total of 7 genera and 8 species belonging to the Caryophylliidae family have been reported in Korean waters so far.

• 한국균학회지
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• 제32권1호
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• pp.1-7
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• 2004

본 연구는 망태버섯속(Dictyophora species) 균의 종 구분을 위하여 국내수집 5균주와 국외도입 6균주에 대한 rDNA ITS 영역의 PCR-RFLP 및 염기서열을 분석하였다. 그 결과, ASI 32001, 32003, 32005, 32006, 32011이 D. indusiata, ASI 32002, 32007, 32008, 32010이 D. echinovolvata, 그리고 ASI 32004와 Phallus rugulosus ASI 25007은 같은 군으로 그룹화 되었다. 이 결과는 기존에 조사된 배양온도, 배지pH, 선택배지 등 배양적 특성과 재배적, 형태적 특성에 의한 구분과 일치하는 경향이었다. 따라서 rDNA ITS 영역의 PCR-RFLP 및 염기서열분석은 Dictyophora속 보존균주의 종 구분에 있어서 선행적, 보충적 수단으로 활용하기에 충분하다고 판단된다.

• 한국식물병리학회:학술대회논문집
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• 한국식물병리학회 2003년도 정기총회 및 추계학술발표회
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• pp.115.1-115
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• 2003

Post-harvest decay, caused by Penicillium spp. is a serious problem of fruits worldwide. Morphological characteristics and molecular markers were used to characterize 22 Penicillium isolates from apples, 18 isolates from pears, 60 from oranges and 18 from grapes and 23reference isolates representing related Penicillium spp. to assess their diversity and resolve their taxonomy. Based on morphological and physiological characteristics, the isolates were grouped as identical or very similar to P. digitatum, P. italicum, P. ulaiense or very similar to P. crustosum, P. expansum, P. solitum and unidentified Penicillium spp. Based on sequence comparisons of ITS region, variable site were presented within and among the species, but there variation were not correlated with the species. Cluster analyses of AP-PCR fragment patterns using UP and L45 primer and the -tubulin gene sequence, the Penicillium species were segregated into distinct groups. Particularly. the -tubulin partial sequence data provided support for species concepts based on morphological and physiological characteristics.

• 한국멀티미디어학회논문지
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• 제12권6호
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• pp.785-793
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• 2009

This paper proposes a signature using dominant singular values for video sequence matching. By considering the input image as matrix A, a partition procedure is first performed to separate the matrix into non-overlapping sub-images of a fixed size. The SVD(Singular Value Decomposition) process decomposes matrix A into a singular value-singular vector factorization. As a result, singular values are obtained for each sub-image, then k dominant singular values which are sufficient to discriminate between different images and are robust to image size variation, are chosen and normalized as the signature for each block in an image frame for matching between the reference video clip and the query one. Experimental results show that the proposed video signature has a better performance than ordinal signature in ROC curve.

• Structural Monitoring and Maintenance
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• 제5권2호
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• pp.173-187
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• 2018

Performance evaluation of RC frame building by nonlinear static pushover analysis that accounts for elastic and post elastic behavior is becoming very popular as a valid decision making tool in seismic hazard resistant designs. Available literature suggests great amount of interest has shown by researchers in suggesting refinements to geometric and material modelling to bridge the gap between analytical predictions and observed performances. Notwithstanding the attempts gaps still exists. Sequence of plastic hinge formation which has great influence on pushover analysis results is an area less investigated. This paper attempts to highlight the importance of hinge sequence considerations to make analysis results more meaningful. Variation in analysis results due to different hinge sequences have been quantified, compared and bounds on analysis results have been presented.

• 한국자기공명학회논문지
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• 제8권2호
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• pp.96-107
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• 2004

We prepared two oligonucleotides containing same base pairing, but different base sequence in the middle region, d(CGAATTCG) and d(CGTATACG). NMR and UV absorbance data represented that such variation in base sequence could cause a significant difference in melting temperature and dynamics between d(CGAATTCG)$_2$ and d(CGTATACG)$_2$ duplexes, which are regarded to be associated with the stacked structure and the width of the minor groove of them. The latter showed poor stability compared to the former, because of poor stacking of bases. And berenil could bind to the minor groove of d(CGAATTCG)$_2$ which is relatively narrow, more strongly than d(CGTATACG)$_2$ and this gave rise to large improvement in thermal stability of the d(CGAATTCG)$_2$ duplex, compared to d(CGTATACG)$_2$.