• 제목/요약/키워드: Sequence analysis

검색결과 6,391건 처리시간 0.035초

Genomic analysis of WCP30 Phage of Weissella cibaria for Dairy Fermented Foods

  • Lee, Young-Duck;Park, Jong-Hyun
    • 한국축산식품학회지
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    • 제37권6호
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    • pp.884-888
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    • 2017
  • In this study, we report the morphogenetic analysis and genome sequence of a new WCP30 phage of Weissella cibaria, isolated from a fermented food. Based on its morphology, as observed by transmission electron microscopy, WCP30 phage belongs to the family Siphoviridae. Genomic analysis of WCP30 phage showed that it had a 33,697-bp double-stranded DNA genome with 41.2% G+C content. Bioinformatics analysis of the genome revealed 35 open reading frames. A BLASTN search showed that WCP30 phage had low sequence similarity compared to other phages infecting lactic acid bacteria. This is the first report of the morphological features and complete genome sequence of WCP30 phage, which may be useful for controlling the fermentation of dairy foods.

시공 공정에 따른 건축 구조물의 구조해석 및 수직부재의 부등변형 (Structural Analysis for Building Structures reflecting Differential Column Shortening based upon Construction Sequence)

  • 조상규;이형우;최창식
    • 한국전산구조공학회:학술대회논문집
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    • 한국전산구조공학회 1998년도 가을 학술발표회 논문집
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    • pp.333-341
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    • 1998
  • The general method of structural analysis for building structures has been based upon the assumption that all dead loads are imposed on a building simultaneously throughout the entire structure. In reality, buildings are built floor by floor or a few floors at a time. The construction dead load is applied gradually onto the structure as the structure is being erected. The prevailing commercial software for structural analysis used to date have resulted in the representation of inaccurate structural behaviors. The actual construction sequence and the loading of the structure ere not properly represented in the analysis. This paper identifies the source of the errors and develops the algorithm to account for the differential column shortening due to construction dead load based upon a given construction sequence

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Whole-genome sequence analysis through online web interfaces: a review

  • Gunasekara, A.W.A.C.W.R.;Rajapaksha, L.G.T.G.;Tung, T.L.
    • Genomics & Informatics
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    • 제20권1호
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    • pp.3.1-3.10
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    • 2022
  • The recent development of whole-genome sequencing technologies paved the way for understanding the genomes of microorganisms. Every whole-genome sequencing (WGS) project requires a considerable cost and a massive effort to address the questions at hand. The final step of WGS is data analysis. The analysis of whole-genome sequence is dependent on highly sophisticated bioinformatics tools that the research personal have to buy. However, many laboratories and research institutions do not have the bioinformatics capabilities to analyze the genomic data and therefore, are unable to take maximum advantage of whole-genome sequencing. In this aspect, this study provides a guide for research personals on a set of bioinformatics tools available online that can be used to analyze whole-genome sequence data of bacterial genomes. The web interfaces described here have many advantages and, in most cases exempting the need for costly analysis tools and intensive computing resources.

모양 시퀀스 기술자를 이용한 효과적인 동작 표현 및 검색 방법 (Efficient Representation and Matching of Object Movement using Shape Sequence Descriptor)

  • 최민석
    • 정보처리학회논문지B
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    • 제15B권5호
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    • pp.391-396
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    • 2008
  • 동영상에서 객체의 움직임은 동영상의 내용을 분석하는데 중요한 요소로 작용한다. 따라서 움직임 정보를 이용하여 동영상 내용을 분석하고 검색하기 위한 많은 방법들이 제안되었다. 그러나 대부분의 방법들은 객체 자체의 동작 보다는 움직임의 방향이나 경로를 분석하는 쪽으로 치중되었다. 본 논문에서는 객체의 움직임에 의한 모양 변화를 이용하여 객체의 동작을 표현하고 비교하기 위한 모양 시퀀스 기술자(descriptor)를 제안한다. 객체의 움직임 정보는 입력된 이미지 시퀀스에서 객체 영역을 추출하여 연속된 2차원 모양 정보로 표현되고, 각각의 2차원 모양 정보는 모양 기술자를 이용하여 1차원 모양 특징 값으로 변환된다. 순서에 따라 배열된 모양 기술자들을 시간 축으로 주파수 변환한 후 저주파영역의 계수를 취하여 모양 시퀀스 기술자를 얻게 된다. 실험을 통하여 제안된 방법이 객체의 동작 정보를 매우 효과적으로 표현 및 비교 가능하여 내용 기반 동영상 검색, 동작 인식 등의 인지적 관점의 움직임 분석 응용에 적용 가능함을 보였다.

지중 송전선로 대칭분 임피던스 해석을 위한 EMTP 전후처리기 개발과 활용 (Development and Application of Pre/Post-processor to EMTP for Sequence Impedance Analysis of Underground Transmission Cables)

  • 최종기;장병태;안용호;최상규;이명희
    • 전기학회논문지
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    • 제63권10호
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    • pp.1364-1370
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    • 2014
  • Power system fault analysis has been based on symmetrical component method, which describes power system elements by positive, negative and zero sequence impedance. Obtaining accurate line impedances as possible are very important for estimating fault current magnitude and setting distance relay accurately. Especially, accurate calculation of zero sequence impedance is important because most of transmission line faults are line-to-ground faults, not balanced three-phase fault. Since KEPCO has started measuring of transmission line impedance at 2005, it has been revealed that the measured and calculated line impedances are well agreed within reasonable accuracy. In case of underground transmission lines, however, large discrepancies in zero sequence impedance were observed occasionally. Since zero sequence impedance is an important input data for distance relay to locate faulted point correctly, it is urgently required to analyze, detect and consider countermeasures to the source of these discrepancies. In this paper, development of pre/post processor to ATP (Alternative Transient Program) version of EMTP (Electro-Magnetic Transient Program) for sequence impedance calculation was described. With the developed processor ATP-cable, effects of ground resistance and ECC (Earth Continuity Conductor) on sequence impedance were analyzed.

진천분지 뢰스-고토양 연속층의 형성과 퇴적 환경 (Formation and sedimentary environment of loess-paleosolsequence in the Jincheon Basin, Chungbuk Province, Korea)

  • 윤순옥;박충선;황상일
    • 한국지형학회지
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    • 제20권3호
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    • pp.1-14
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    • 2013
  • 진천분지 하안단구면 상부에 퇴적되어 있는 뢰스-고토양 연속층인 진천단면을 대상으로 형성시기 및 입도조성과 기후변화 등 퇴적환경을 밝혔다. 진천단면은 상부에서 하부로 표층, 뢰스-고토양 연속층, 점이층 I, 점이층 II 그리고 하안단구 자갈층으로 이루어져 있다. OSL 연대측정 결과 뢰스-고토양 연속층은 MIS 6~4에 퇴적된 것으로 판단된다. 연속층은 대자율 변화에 기초하여 4개의 층준으로 구분된다. 입도분석 결과, 진천단면 뢰스-고토양 연속층은 지금까지 한국에서 보고된 뢰스 퇴적층과 입도조성이 유사하다. 특히 Y값은 중국 뢰스고원의 뢰스 및 고토양 층준보다는 작고, Red Clay 또는 양쯔강 하류의 Xiashu 뢰스와 유사하다. 이는 원거리 기원 또는 퇴적 이후 한반도에서 강한 풍화작용을 경험한데 기인한 것으로 생각된다.

Development of an efficient sequence alignment algorithm and sequence analysis software

  • Kim, Jin;Hwang, Jae-Joon;Kim, Dong-Hoi;Saangyong Uhmn
    • 한국지능시스템학회:학술대회논문집
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    • 한국퍼지및지능시스템학회 2003년도 ISIS 2003
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    • pp.264-267
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    • 2003
  • Multiple sequence alignment is a useful tool to identify the relationships among protein sequences. Dynamic programming is the most widely used algorithm to obtain multiple sequence alignment with optimal cost. However dynamic programming cannot be applied to certain cost function due its drawback and to produce optimal multiple sequence alignment. We proposed sub-alignment refinement algorithm to overcome the problem of dynamic programming and impelmented this algorithm as a module of our MS Windows-based sequence alignment program.

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Bacillus subtilis로 부터 분리한 cellulase 유전자의 조절부위에 대한 염기서열분석 (Analysis on the nucleotide sequence of the signal region of bacillus subitilis extracellular cellulase gene)

  • 서연수;이영호;백운화;강현삼
    • 미생물학회지
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    • 제24권3호
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    • pp.236-242
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    • 1986
  • The nucleotide sequence of the genetic control site of Bacillus subtilis gene for $(1-4)-{\beta}-D-glucan$ endoglucanase (cellulase) was determined according to the procedures of the dideoxy chain termination method(Sanger et. al., 1977). The deduced amino acid sequence of this enzyme has a hydrophobic signal peptide at the $NH_2$ terminus similar to those found in fifteen other extracellualr enzymes from Bacillus species. This is followed by a sequence resembling the Bacillus ribosome binding site 14 nucleotide before the first codon of the gene. The presumptive promoter sequence was located 92 base pairs upstream fromthe initiation codon. The homology region in signal sequences was striking when comparing all the signal sequences of sixteen extracellular enzymes from Bacillus species so far compiled.

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피보나치수와 벤포드법칙에 대한 탐색적 접근 (Exploratory Approach for Fibonacci Numbers and Benford's Law)

  • 장대흥
    • 응용통계연구
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    • 제22권5호
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    • pp.1103-1113
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    • 2009
  • 피보나치수열의 첫 숫자수열이 벤포드법칙을 따름은 알려진 사실이다. 이러한 피보나치수열을 확장하여 임의의 두개의 자연수를 정하고 재귀식 $a_{n+2}=a_{n+1}+a_n$을 만족하는 수열을 만들었을 때 이 수열의 첫 숫자수열이 벤포드법칙을 만족하는 지를 확인하고 이러한 수열의 첫 숫자수열의 구조를 탐색적 자료분석의 입장에서 살펴보았다.

Molecular Cloning and Sequencing of Cell Wall Hydrolase Gene of an Alkalophilic Bacillus subtilis BL-29

  • Kim, Tae-Ho;Hong, Soon-Duck
    • Journal of Microbiology and Biotechnology
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    • 제7권4호
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    • pp.223-228
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    • 1997
  • A DNA fragment containing the gene for cell wall hydrolase of alkalophilic Bacillus subtilis BL-29 was cloned into E. coli JM109 using pUC18 as a vector. A recombinant plasmid, designated pCWL45B, was contained in the fragment originating from the alkalophilic B. subtilis BL-29 chromosomal DNA by Southern hybridization analysis. The nucleotide sequence of a 1.6-kb HindIII fragment containing a cell wall hydrolase-encoding gene was determined. The nucleotide sequence revealed an open reading frame (ORF) of 900 bp with a concensus ribosome-binding site located 6 nucleotide upstream from the ATG start codon. The primary amino acid sequence deduced from the nucleotide sequence revealed a putative protein of 299 amino acid residues with an M.W. of 33, 206. Based on comparison of the amino acid sequence of the ORF with amino acid sequences in the GenBank data, it showed significant homology to the sequence of cell wall amidase of the PBSX bacteriophage of B. subtilis.

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