• Title/Summary/Keyword: Sequence Search

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EEG WAVEFORM DETECTION BASED ON THE SEARCH OF DISTINCTIVE LINE-SEGMENTS (특징적인 직선요소들의 검색에 기초한 EEG 파형 검출)

  • Park, Seung-Hun;Chang, Tae-Kyu
    • Proceedings of the KOSOMBE Conference
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    • v.1992 no.05
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    • pp.121-122
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    • 1992
  • We present a new EEG waveform detection method, based on the search of distinctive line-segments. The method is based on the assumption that EEG waveform morphology is characterized by a sequence of its distinctive line-segments and their structural features. In this method, the distinctive line segments are first searched for, and the structural feature analysis is performed on the found line-segment sequence. Experiments of detecting epileptic spikes are performed on four different subjects.

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Generative Process Planning through Feature Recognition (특징형상 인식을 통한 창성적 자동 공정계획 수립 - 복합특징형상 분류를 중심을 -)

  • 이현찬;이재현
    • Korean Journal of Computational Design and Engineering
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    • v.3 no.4
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    • pp.274-282
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    • 1998
  • A feature is a local shape of a product directly related to the manufacturing process. The feature plays a role of the bridge connecting CAD and CAM. In the process planning for he CAM, information on manufacturing is required. To get the a manufacturing information from CAD dat, we need to recognize features. Once features are recognized, they are used as an input for the process planning. In this paper, we thoroughly investigate the composite features, which are generated by interacting simple features. The simple features in the composite feature usually have precedence relation in terms of process sequence. Based on the reason for the precedence relation, we classify the composite features for the process planning. In addition to the precedence relation, approach direction is used as an input for the process planning. In the process planning, the number of set-up orientations are minimized whole process sequence for the features are generated. We propose a process planning algorithm based on the topological sort and breadth-first search of graphs. The algorithn is verified using sample products.

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Optimal laminate sequence of thin-walled composite beams of generic section using evolution strategies

  • Rajasekaran, S.
    • Structural Engineering and Mechanics
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    • v.34 no.5
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    • pp.597-609
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    • 2010
  • A problem formulation and solution methodology for design optimization of laminated thin-walled composite beams of generic section is presented. Objective functions and constraint equations are given in the form of beam stiffness. For two different problems one for open section and the other for closed section, the objective function considered is bending stiffness about x-axis. Depending upon the case, one can consider bending, torsional and axial stiffnesses. The different search and optimization algorithm, known as Evolution Strategies (ES) has been applied to find the optimal fibre orientation of composite laminates. A multi-level optimization approach is also implemented by narrowing down the size of search space for individual design variables in each successive level of optimization process. The numerical results presented demonstrate the computational advantage of the proposed method "Evolution strategies" which become pronounced to solve optimization of thin-walled composite beams of generic section.

ORF Miner: a Web-based ORF Search Tool

  • Park, Sin-Gi;Kim, Ki-Bong
    • Genomics & Informatics
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    • v.7 no.4
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    • pp.217-219
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    • 2009
  • The primary clue for locating protein-coding regions is the open reading frame and the determination of ORFs (Open Reading Frames) is the first step toward the gene prediction, especially for prokaryotes. In this respect, we have developed a web-based ORF search tool called ORF Miner. The ORF Miner is a graphical analysis utility which determines all possible open reading frames of a selectable minimum size in an input sequence. This tool identifies all open reading frames using alternative genetic codes as well as the standard one and reports a list of ORFs with corresponding deduced amino acid sequences. The ORF Miner can be employed for sequence annotation and give a crucial clue to determination of actual protein-coding regions.

Task Planning Algorithm with Graph-based State Representation (그래프 기반 상태 표현을 활용한 작업 계획 알고리즘 개발)

  • Seongwan Byeon;Yoonseon Oh
    • The Journal of Korea Robotics Society
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    • v.19 no.2
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    • pp.196-202
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    • 2024
  • The ability to understand given environments and plan a sequence of actions leading to goal state is crucial for personal service robots. With recent advancements in deep learning, numerous studies have proposed methods for state representation in planning. However, previous works lack explicit information about relationships between objects when the state observation is converted to a single visual embedding containing all state information. In this paper, we introduce graph-based state representation that incorporates both object and relationship features. To leverage these advantages in addressing the task planning problem, we propose a Graph Neural Network (GNN)-based subgoal prediction model. This model can extract rich information about object and their interconnected relationships from given state graph. Moreover, a search-based algorithm is integrated with pre-trained subgoal prediction model and state transition module to explore diverse states and find proper sequence of subgoals. The proposed method is trained with synthetic task dataset collected in simulation environment, demonstrating a higher success rate with fewer additional searches compared to baseline methods.

HSA-based HMM Optimization Method for Analyzing EEG Pattern of Motor Imagery (운동심상 EEG 패턴분석을 위한 HSA 기반의 HMM 최적화 방법)

  • Ko, Kwang-Eun;Sim, Kwee-Bo
    • Journal of Institute of Control, Robotics and Systems
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    • v.17 no.8
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    • pp.747-752
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    • 2011
  • HMMs (Hidden Markov Models) are widely used for biological signal, such as EEG (electroencephalogram) sequence, analysis because of their ability to incorporate sequential information in their structure. A recent trends of research are going after the biological interpretable HMMs, and we need to control the complexity of the HMM so that it has good generalization performance. So, an automatic means of optimizing the structure of HMMs would be highly desirable. In this paper, we described a procedure of classification of motor imagery EEG signals using HMM. The motor imagery related EEG signals recorded from subjects performing left, right hand and foots motor imagery. And the proposed a method that was focus on the validation of the HSA (Harmony Search Algorithm) based optimization for HMM. Harmony search algorithm is sufficiently adaptable to allow incorporation of other techniques. A HMM training strategy using HSA is proposed, and it is tested on finding optimized structure for the pattern recognition of EEG sequence. The proposed HSA-HMM can performs global searching without initial parameter setting, local optima, and solution divergence.

A Fast Intra Skip Detection Algorithm for H.264/AVC Video Encoding

  • Kim, Byung-Gyu;Kim, Jong-Ho;Cho, Chang-Sik
    • ETRI Journal
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    • v.28 no.6
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    • pp.721-731
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    • 2006
  • A fast intra skip detection algorithm based on the ratedistortion (RD) cost for an inter frame (P-slices) is proposed for H.264/AVC video encoding. In the H.264/AVC coding standard, a robust rate-distortion optimization technique is used to select the best coding mode and reference frame for each macroblock (MB). There are three types of intra predictions according to profiles. These are $16{\times}16$ and $4{\times}4$ intra predictions for luminance and an $8{\times}8$ intra prediction for chroma. For the high profile, an $8{\times}8$ intra prediction has been added for luminance. The $4{\times}4$ prediction mode has 9 prediction directions with 4 directions for $16{\times}16$ and $8{\times}8$ luma, and $8{\times}8$ chrominance. In addition to the inter mode search procedure, an intra mode search causes a significant increase in the complexity and computational load for an inter frame. To reduce the computational load of the intra mode search at the inter frame, the RD costs of the neighborhood MBs for the current MB are used and we propose an adaptive thresholding scheme for the intra skip extraction. We verified the performance of the proposed scheme through comparative analysis of experimental results using joint model reference software. The overall encoding time was reduced up to 32% for the IPPP sequence type and 35% for the IBBPBBP sequence type.

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Adaptive Motion Vector Estimation Using the Regional Feature (영역별 특성을 이용한 적응적 움직임 벡터 추정 기법)

  • Park, Tae-Hee;Lee, Dong-Wook;Kim, Jae-Min;Kim, Young-Tae
    • Proceedings of the KIEE Conference
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    • 1995.11a
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    • pp.502-504
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    • 1995
  • In video image compression, it is important to extract the exact notion information from image sequence in order to perform the data compression, the field rate conversion, and the motion compensated interpolation effectively. It is well known that the location of the smallest sum of absolute difference(SAD) does not always give the true motion vector(MV) since the MV obtained via full block search is often corrupted by noise. In this paper, we first classifies the input blocks into 3 categories : the background, the shade-motion, and the edge-motion. According to the characteristics of the classified blocks, multiple locations of relatively small SAD are searched with an adaptive search window by using the proposed method. The proposed method picks MVs among those candidates by using temporal correlation. Since temporal correlation reveals the noise level in a particular region of the video image sequence, we are able to reduce the search are very effectively.

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Gene Sequences Clustering for the Prediction of Functional Domain (기능 도메인 예측을 위한 유전자 서열 클러스터링)

  • Han Sang-Il;Lee Sung-Gun;Hou Bo-Kyeng;Byun Yoon-Sup;Hwang Kyu-Suk
    • Journal of Institute of Control, Robotics and Systems
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    • v.12 no.10
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    • pp.1044-1049
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    • 2006
  • Multiple sequence alignment is a method to compare two or more DNA or protein sequences. Most of multiple sequence alignment tools rely on pairwise alignment and Smith-Waterman algorithm to generate an alignment hierarchy. Therefore, in the existing multiple alignment method as the number of sequences increases, the runtime increases exponentially. In order to remedy this problem, we adopted a parallel processing suffix tree algorithm that is able to search for common subsequences at one time without pairwise alignment. Also, the cross-matching subsequences triggering inexact-matching among the searched common subsequences might be produced. So, the cross-matching masking process was suggested in this paper. To identify the function of the clusters generated by suffix tree clustering, BLAST and CDD (Conserved Domain Database)search were combined with a clustering tool. Our clustering and annotating tool consists of constructing suffix tree, overlapping common subsequences, clustering gene sequences and annotating gene clusters by BLAST and CDD search. The system was successfully evaluated with 36 gene sequences in the pentose phosphate pathway, clustering 10 clusters, finding out representative common subsequences, and finally identifying functional domains by searching CDD database.

Genomic Structure of the Cu/Zn Superoxide Dismutase(SOD1) Gene from the Entomopathogenic Fungus, Cordyceps pruinosa

  • Park, Nam Sook;Jin, Byung Rae;Lee, Sang Mong
    • International Journal of Industrial Entomology and Biomaterials
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    • v.39 no.2
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    • pp.67-73
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    • 2019
  • The genomic structure of the Cu/Zn superoxide dismutase (SOD1) gene from the entomopathogenic fungus, Cordyceps pruinosa was characterized. The SOD1 gene of C. pruinosa spans 947 nucleotides and consisted of four exons encoding for 154 amino acids and three introns. Four exons of the SOD1 gene are composed of 13, 331, 97 and 20 nucleotides respectively. Homology search of amino acid sequences of the SOD1 gene of C. pruinosa with another 13 fungi species showed higher sequence similarity of 69% ~ 95% and had the most highest sequence identity of 95% with Beauveria bassiana and Cordyceps militaris, which can easely infect domesticated Bombyx mori and another wild lepidopteran species in artificial or natual manner of infection. This SOD1 gene sequence showed copper, zinc and beta-barrel fold sites. Homology search showed that the Cu/Zn SOD1 gene from the entomopathogenic fungus, C. pruinosa is an orthologous gene homolog present in different species of organism whose ancestor predates the split between the relating species. In addition, C. pruinosa SOD1 gene is placed together within the ascomycetes group of fungal clade. From these results it is concluded that C. pruinosa SOD1 gene is orthologous gene having the same or very similar functions with a common evolutionary ancestor.