• 한국해양학회지
• /
• v.14 no.1
• /
• pp.32-38
• /
• 1979

The original concept and theory of Shannon's function H=-$\Sigma$(i-1,n)Pi, log$\_$2/Pi and its applicable domains in ecology are discussed. The confusions exist in use and interpretation of this function are due to: 1. Mixing the idea of proper ecological diversity with that of Shannon's information theory. 2. Confusion of physical or thermodynamical systems with ecological systems. 3. Confusion of the system from which one had calculated function H with the system of which function H is interpreted. It's proposed to use function H for the comparison of community's structure and so, for the distinction of community's evolution (succession) steps.

• Journal of Forest and Environmental Science
• /
• v.27 no.3
• /
• pp.127-134
• /
• 2011

The purpose of the study was to assess and compare the diversity of plant species (trees, shrubs, herbs) of natural forest and plantations. A total of 52 plant species were recorded in the natural forest, of which 16 were trees, 15 were shrubs and 21 were herbs. On the contrary, 31 species of plants including 11 trees, 8 shrubs and 12 herbs were identified in plantation forest. Shannon-Wiener diversity index were 2.70, 2.72 and 3.12 for trees, shrubs and herbs respectively in the natural forest. However, it was 2.35 for tree species, 2.31 for shrub species and 2.81 for herb species in the plantation forest. Jaccard's similarity index showed that 71% species of trees, 44% species of shrubs and 43% species of herbs were same in plantations and natural forest.

• Animal cells and systems
• /
• v.1 no.4
• /
• pp.577-581
• /
• 1997

Species diversity of subcortical arthropod communities were assessed in two tropical regions and two temperate regions. In the tropics, communities of subcortical arthropods were more diverse in La Selva, Costa Rica, than on Barro Colorado Island, Panama. Costa Rican communties yielses higher values of both Shannon and Simpson diversity indices than Panamanian communities. Compared to Panamanian communities, Costa Rican ones supported higher measures of both species richness and evenness. Between the two temperate regions, communities of subcortical arthropods in Korea scored consistently higher values of both Shannon and Simpson indices than the ones in eastern Massachusetts, U.S.A. When individual diversity components were compared, however, Korean communities yielded exceptionally high evenness measures but lower species richness than the communities in the U.S.A. Unusually high evenness values of Korean subcortical arthropods were due to extremely low population densities of all component species.

• Korean Journal of Environment and Ecology
• /
• v.10 no.2
• /
• pp.270-282
• /
• 1997

This investgation was performed to provide basic data for the management program of the Soraksan national park. Sixty plots were set up and surveyed in the Sinhungsa-Wasondae Area. The vegetation was divided into two communities, Pinus densiflora community and Quercus serrata community, according to the analysis of DCA ordination. It was found out that the succession of the Pinus densiflora comunity would proceed to Quercus serrata community of which components was dominant in understory layer and shrub layer. And it was found out that in the Quercus serrata community the Pinus densiflora being mainly big size in DBH would becomr dominant comtinuously. Shannon's diversity of both community were 1.2554 and 1.1134 respectively. The numbers of woody species per 100m$^{2}$ ranged 7 to 26, and the average number of woody species was 13.

• Korean Journal of Weed Science
• /
• v.8 no.3
• /
• pp.317-323
• /
• 1988

This survey was conducted to know characterization of weed occurrence under protected culture conditions at Yousong in 1985. Chenopodium album, Polygonum hydropiper, Portulaca oleracea and Digitaria sanguinalis were dominated in outdoor, whereas Capsella bursa-pastoris, C. album, D. sanguinalis and P. oleracea were dominant in polyethylene house. More weeds emerged in mulching plots and dry weight of weeds was greater in non-mulching plots. Summer broadleaf weeds and summer grasses were abundant in outdoor, whereas non-mulching plots in polyethylene house was dominated by winter broadleaf weeds, and mulching plots in polyethylene house were dominated by winter grasses and winter broadleaf weeds in early stage and summer grasses and summer broadleaf weeds in late stage. Simpson index was high in polyethylene house and Shannon's diversity index, maximum diversity for the Shannon diversity index were lower than eveness using the Shannon diversity index and this trend was more remarkable in mulching and mulching in tunnel than in non-mulching under polyethylene house condition. Shannon diversity index, maximum diversity for the Shannon diversity index were high in mulching or tunnel, and Simpson index was high in non-mulching in outdoor condition. Interspecific competition was more severe than intraspecific competition in both conditions.

• Journal of Marine Bioscience and Biotechnology
• /
• v.16 no.1
• /
• pp.1-18
• /
• 2024

Coastal dunes must be conserved. Their native halophytes support coastal geography while their symbiotic microorganisms help vegetation thrive. The Goraebul coast has the largest, well-conserved dune system on the East Sea of the Korean Peninsula due to a climax mixed halophyte (C. soldanella, C. kobomugi, and E. mollis) vegetation support. This study identified rhizobacteria and their diversity in mixed halophyte communities unique to Goraebul. Five phyla, 12 genera, and 21 species were identified based on 16S rDNA sequences from 65 isolates. The phylum Bacillota, class Bacillota, order Bacillales, and family Bacillaceae were identified, with Bacillus as the dominant genus (46.15%). The richness and Shannon's diversity were higher at the species than at the genus level due to the dominance of Bacillus; however, various Bacillus species (7) were identified. Therefore, the climax mixed vegetation adapted to the Goraebul coast may exert natural selection pressure in favor of the common characteristics of Bacillus. However, despite this advantage, the Shannon equitability (0.86), Simpson (0.08), and Shannon diversity (2.79) indexes indicate a stable rhizosphere cluster and the climax mixed vegetation is affected by symbiotic relationships between healthy rhizosphere microbiota.

• Journal of Oral Medicine and Pain
• /
• v.47 no.1
• /
• pp.10-26
• /
• 2022

Purpose: The purpose of this study was to investigate whether various saliva collection methods affect the observed salivary microbiome and whether microbiomes of stimulated and unstimulated saliva and plaque differ in richness and diversity. Methods: Seven sampling methods for unstimulated saliva, stimulated saliva, and plaque samples were applied to six orally and systemically healthy participants. Bacterial 16S ribosomal RNA genes of 10 major oral bacterial species, namely, Aggregatibacter actinomycetemcomitans, Porphyromonas gingivalis, Tannerella forsythia, Treponema denticola, Fusobacterium nucleatum, Prevotella intermedia, Prevotella nigrescens, Streptococcus mitis, Streptococcus sobrinus, and Lactobacillus casei, were analyzed by real-time polymerase chain reaction. We comprehensively examined the dependence of the amount of bacterial ribosomal DNA (rDNA), bacterial-community composition, and relative abundance of each species on sample collection methods. Results: There were significant differences in the bacterial rDNA copy number depending on the collection method in three species: F. nucleatum, P. nigrescens, and S. mitis. The species with the highest richness was S. mitis, with the range from 89.31% to 100.00%, followed by F. nucleatum, P. nigrescens, T. denticola, T. forsythia, and P. intermedia, and the sum of the proportions of the remaining five species was less than 1%. The species with the lowest observed richness was P. gingivalis (<0.1%). The Shannon diversity index was the highest in unstimulated saliva collected with a funnel (4.449). The Shannon diversity index was higher in plaque samples (3.623) than in unstimulated (3.171) and stimulated (3.129) saliva and in mouthwash saliva samples (2.061). Conclusions: The oral microbial profile of saliva samples can be affected by sample collection methods, and saliva differs from plaque in the microbiome. An easy and rapid technique for saliva collection is desirable; however, observed microbial-community composition may more accurately reflect the actual microbiome when unstimulated saliva is assayed.

• Korean Journal of Microbiology
• /
• v.49 no.3
• /
• pp.282-285
• /
• 2013

Microbial diversities in the 300 m and 500 m deep seawaters near Goseong, Gangwon Province (South Korea), were investigated. Pyrosequencing of 16S rRNA genes of marine microbes resulted in 19,474 reads from the 300 m deep seawaters, which consisted of Alphaproteobacteria (57.41%) and Gammaproteobacteria (38.85%), and 82,806 reads from the 500 m deep seawaters, which consisted of Gammaproteobacteria (99.64%) mostly. Rhodobacterales (57.31%) were dominant in the 300 m deep seawaters, but Alteromonadales (45.65%) and Oceanospirillales (34.61%) were dominant in the 500 m deep seawaters. On the bases of operational taxonomic units and diversity indexes (Shannon and Simpson), biodiversity of marine bacteria in the 500 m deep seawaters was shown to be higher than that in the 300 m deep seawaters.

• The Journal of the Institute of Internet, Broadcasting and Communication
• /
• v.17 no.1
• /
• pp.59-68
• /
• 2017

The flower and woman are beautiful but Euler's theorem and the symmetry are the best. Shannon applied his theorem to information and communication based on Euler's theorem. His theorem is the root of wireless communication and information theory and the principle of today smart phone. Their meeting point is $e^{-SNR}$ of MIMO(multiple input and multiple output) multiple antenna diversity. In this paper, Euler, who discovered the most beautiful formula($e^{{\pi}i}+1=0$) in the world, briefly guided Shannon's formula ($C=Blog_2(1+{\frac{S}{N}})$) to discover the origin of wireless communication and information communication, and these two masters prove a meeting at the Shannon limit, It reveals something what this secret. And we find that it is symmetry and element-wise inverse are the hidden secret in algebraic coding theory and triangular function.

• Microbiology and Biotechnology Letters
• /
• v.43 no.1
• /
• pp.65-78
• /
• 2015

The bacterial diversity of the rhizosphere soil of S. japonica native to Suncheon bay was analyzed. Ninety two strains showing different morphological characteristics were isolated from the soils around the community of S. japonica. Bacterial diversity and distributions were studied by phylogenetic analysis of the partial 16S rDNA sequences. Ninety two strains were partially sequenced and analyzed phylogenetically. These strains were composed of 5 phyla firmicutes (56.5%), gamma-proteobacteria (29.3%), alpha-proteobacteria (5.4%), actinobacteria (5.4%), bacteroidetes (3.3%) and Shannon’s diversity index (H') were different from each of sampling sites (1.675, 1.924 and 2.04). Eleven isolates were presumed to be novel species candidates based on similarity analysis of the 16s rRNA gene sequences. Overall, Firmicutes and gamma-proteobacteria of the rhizosphere soil of S. japonica showed a high diversity.