• 제목/요약/키워드: Rice.Bacterial leaf blight

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Combining In Silico Mapping and Arraying: an Approach to Identifying Common Candidate Genes for Submergence Tolerance and Resistance to Bacterial Leaf Blight in Rice

  • Kottapalli, Kameswara Rao;Satoh, Kouji;Rakwal, Randeep;Shibato, Junko;Doi, Koji;Nagata, Toshifumi;Kikuchi, Shoshi
    • Molecules and Cells
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    • 제24권3호
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    • pp.394-408
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    • 2007
  • Several genes/QTLs governing resistance/tolerance to abiotic and biotic stresses have been reported and mapped in rice. A QTL for submergence tolerance was found to be co-located with a major QTL for broad-spectrum bacterial leaf blight (bs-blb) resistance on the long arm of chromosome 5 in indica cultivars FR13A and IET8585. Using the Nipponbare (japonica) and 93-11 (indica) genome sequences, we identified, in silico, candidate genes in the chromosomal region [Kottapalli et al. (2006)]. Transcriptional profiling of FR13A and IET8585 using a rice 22K oligo array validated the above findings. Based on in silico analysis and arraying we observed that both cultivars respond to the above stresses through a common signaling system involving protein kinases, adenosine mono phosphate kinase, leucine rich repeat, PDZ/DHR/GLGF, and response regulator receiver protein. The combined approaches suggest that transcription factor EREBP on long arm of chromosome 5 regulates both submergence tolerance and blb resistance. Pyruvate decarboxylase and alcohol dehydrogenase, co-located in the same region, are candidate downstream genes for submergence tolerance at the seedling stage, and t-snare for bs-blb resistance. We also detected up-regulation of novel defense/stress-related genes including those encoding fumaryl aceto acetate (FAA) hydrolase, scramblase, and galactose oxidase, in response to the imposed stresses.

점액세균 KR025의 분리 동정 및 생리활성물질의 탐색 (Isolation and Identification of Myxobacteria KR025 and Searching of Their Bioactive Compounds)

  • 김병섭;안종웅;조광연
    • 한국식물병리학회지
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    • 제14권4호
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    • pp.345-349
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    • 1998
  • Fifty isolates of myxobacteria were isolated from soils from several areas in Korea during 1996-1997 and bioactivity against plant pathogenic fungi of these isolates was examined. A myxobacterial isolate KR025 showed good antifungal activities against Pyricularia oryzae, Cryphonectria parasitica, Colletotrichum lagenarium, and C. gloeosporioides but did not against Rhizoctonia solani, Fusarium oxysporum and Pythium ultimum. The bacterium was identified as Myxococcus fulvus based on morphological and physiological characteristics. Antifungal substances were extracted from culture broth and bacterial cell of Myxococcus fulvus KR025 by ethyl acetate. Antifungal substance of Myxothiazole (100 ${\mu}{\textrm}{m}$/ml) produced by Myxococcus fulvus KR 025 controlled 97.0% rice blast, tomato late blight, wheat leaf rust, and barley powdery mildew and showed 45.0 and 82.6% disease control of rice sheath blight and cucumber gray model, respectively.

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2004년 주요 농작물 병해 발생개황 (Review of Disease Incidence of Major Crops of the South Korea in 2004)

  • 명인식;박경석;홍성기;박진우;심홍식;이영기;이상엽;이승돈;이수헌;최홍수;최효원;허성기;신동범
    • 식물병연구
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    • 제11권2호
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    • pp.89-92
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    • 2005
  • 2004년은 전년에 비해 기온이 높았고 강수량이 적었다. 벼 못자리 병, 잎도열병 발생 필지, 잎집무늬마름병, 흰잎마름병과 고추 역병, 탄저병 및 바이러스병, 시설참외의 급성 시들음 증상, 흰가루병 등이 2003년에 비해 증가하였다. 특히 벼잎집무늬마름병과 흰잎마름병은 전년에 비해 2배 이상 병 발생이 증가하였다. 벼 이삭도열병이 전년 $3\%$에서 2004년 $0.7\%$로 감소된 것은 출수기 동안 평균기온은 높았으나 강수일수, 강수량 및 습도가 낮아 잎도열병균이 이삭으로의 전파를 억제한 것으로 추정되었다. 고추역병은 전년에 비해 크게 감소되었다. 그리고 발표하지 않은 다른 병에 의한 피해는 다소 감소 혹은 유사한 수준이었다.

벼 아소미노리 교배조합 품종의 벼흰잎마름병 저항성 (Resistance of Varieties Bred by Crossing with Asominori to Bacterial Leaf Blight)

  • 심재성
    • 한국자원식물학회지
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    • 제10권2호
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    • pp.128-134
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    • 1997
  • This study was conducted to test on the resistance of varieties bred by crossing with Asominori to bacterial leaf blight. Nakdongbyeo and Dongjinbyeo which were susceptible to HB 9011, 8 resistant varieties including Ilmibyeo derived from Asominori and Asominori, Hwangok, 13 varieties including Chukoku 45 which were resistance to HB 9011, HB 9022 and HB 9033 were used to screen their res ponce depending on the various screening methods such as the true resistance, the secondary infection resistance and the disease common field test methods, and the results are as follows: Among 13 varieties tested, 11 varieties including llmibyeo showed tme resistance to HB 9011. Less than 1.0cm of disease lesion were developed on these varieties. Disease lesion was not developed on most of the Asominori lines including Daechongbyeo against IIB9011 and 1lmibyeo was also resistance to HB 9011, on this variety disease lesion area rate was 1.2%, and 7 varieties including Hwajinbyeo showed field resistance to HB 9022. Disease lesion area rate were 19.6% on Nakdongbyeo. 15.6% on Dongjinbyeo, from 3.0% to 2.4% on Asominori lines, and 0.5% on the Asominori when screened at disease common area. Disease was not developed on Keumnambyeo. Significant correlation coefficiences were found between the results from the test methods of the true resistance, the field resistance ancl the field resistance at disease common field tests on Asominori lines, but in some cases, even the varieties on which disease lesions developed, showed field resistance to HB 9022 and HB 9033.

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수도 품종 IR50의 백엽고병 저항성 유전 (Inheritance of Resistance in Rice Cultivar IR50 to Bacterial Leaf Blight)

  • 박순직;신문식
    • 한국응용곤충학회지
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    • 제23권2호
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    • pp.69-73
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    • 1984
  • 백엽고병에 저항성이면서 조생인 IR50품종과 이병성이면서 조생인 Zhu-Lian-Ai 품종간 조합 $F_2$에서 백엽고병 균주 JN7919에 대한 저항성의 유전양식 및 저항성 유전자와 출수특성간의 연관관계를 검토한 결과를 요약하면 다음과 같다. 1. 저항성과 이병성이 9:7로 분리되어 IR50품종의 백엽고병 저항성에는 2쌍의 우성유전자가 보족적으로 작용하는 것으로 표현되었다. 2. 조생과 만생이 7:9로 분리되어 IR50과 ZhuLian-Ai의 조생에는 서로 다른 한쌍씩의 유전자가 관여하고 있으며 이들은 상호보완적으로 작용하여 만생을 발현시키는 것으로 나타났다. 3. IR50의 백엽고병 저항성 유전자는 조생유전자와 연관되어 있으며 조환가는 $6.1\~25.6\%$로 추정되었다.

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식물병원성세균의 약제저항성에 관한 연구 III. 벼 흰빛잎마름병균에 있어서 Streptomycin 내성균주의 몇 가지 변이 (Studies on the Chemical Resistance of Phytopathogenic Bacteria III. Some Variations on the Streptomycin Resistant Isolates of the Rice Bacterial Leaf Blight Pathogen, Xanthomonas oryzae(Uyeda et Ishiyama) Dowson)

  • 조원철;심재욱
    • 한국응용곤충학회지
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    • 제16권4호
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    • pp.235-239
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    • 1977
  • 선발에 의하여 얻은 벼 흰빛잎마름병균 Xanthomonas oryzae의 Streptomycin 내성균에 대하여 병원성, 배지내에서의 생장량 및 자외선 감수성에 대한 변이성을 조사하여 다음과 같은 결과를 얻었다. (1) SM 내성균은 Wase-Aikoku-3, Rant Emas-2 황옥 및 Kimmase의 4개 판별품종에 대한 병원성 비교에서 75-6의 내성균주가 황옥에 대하여 감수성 반응이 모균과 달리 중정도의 저항성을 나타내었다. 2) SM-내성균은 정상배지에서 모균보다 약간 높은 생장량을 보였고 100ug/ml Agrepto 첨가 배지에서는 접종후 60시간까지 생장이 조지되었으나 70시간 이후에는 모균의 생장량을 능가하였다. (3) SM-내성균은 254mu 파장의 자외선 조사에서 모균과 동일한 감수성을 나타내어 내성인자는 안정된 것으로 생각되었다.

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벼 흰빛잎마름병균의 생리적 성상에 관한 시험 (Studies on the Physiological Characteristics of Bacterial Leaf Blight Pathogen of rice, Xanthomonas oryzae Dowson)

  • 최용철;이경휘;조의규
    • 한국응용곤충학회지
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    • 제10권2호
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    • pp.97-101
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    • 1971
  • 벼 흰빛잎마름병의 병원균의 생리적 성질을 구명하고자 시험한 곁과는 다음과 같았다. 1, 공시균주로는 본 병리 연구 담당관실 보존균주 및 일본, 비율빈에서 분양받은 균주와 최근 IR 계통품종과 이병성 품종에서 채집 분리된 10균주를 공시하였다. 2. 탄소원의 분해 및 산도변화에서는 Glucose, Galactose는 모든 균주가 이용하였고 Esculin, Mannitol, Raffinose Salicin, Saccharose는 몇몇균주가 이용했으며 lactose, Starch, Dextrin은 이용하지 못하였다. 3. 시험에 사용된 공시균주는 유화수소 및 암모니아를 생성하였으며 methylene blue 환원시험에서는 환인이 일어났으며 인돌생성은 하지 않았고 젤라틴은 서서히 액화시켰지만 균중간에는 액화정토가 서로 차이가 났으며 우유의 소화 및 응결은 없었으며 리트머스 우유를 청변시켰다.

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DNA Microarray and Gene Ontology Enrichment Analysis Reveals That a Mutation in opsX Affects Virulence and Chemotaxis in Xanthomonas oryzae pv. oryzae

  • Kim, Hong-Il;Park, Young-Jin
    • The Plant Pathology Journal
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    • 제32권3호
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    • pp.190-200
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    • 2016
  • Xanthomonas oryzae pv. oryzae (Xoo) causes bacterial leaf blight (BLB) in rice (Oryza sativa L.). In this study, we investigated the effect of a mutation in opsX (XOO1056), which encodes a saccharide biosynthesis regulatory protein, on the virulence and bacterial chemotaxis of Xoo. We performed DNA micro-array analysis, which showed that 63 of 2,678 genes, including genes related to bacterial motility (flagellar and chemotaxis proteins) were significantly downregulated ($<\;-2\;log_2$ fold changes) by the mutation in opsX. Indeed, motility assays showed that the mutant strain was nonmotile on semisolid agar swarm plates. In addition, a mutant strain (opsX::Tn5) showed decreased virulence against the susceptible rice cultivar, IR24. Quantitative real-time RT-PCR reaction was performed to confirm the expression levels of these genes, including those related to flagella and chemotaxis, in the opsX mutant. Our findings revealed that mutation of opsX affects both virulence and bacterial motility. These results will help to improve our understanding of Xoo and provide insight into Xoo-rice interactions.

Bacillus oryzicola sp. nov., an Endophytic Bacterium Isolated from the Roots of Rice with Antimicrobial, Plant Growth Promoting, and Systemic Resistance Inducing Activities in Rice

  • Chung, Eu Jin;Hossain, Mohammad Tofajjal;Khan, Ajmal;Kim, Kyung Hyun;Jeon, Che Ok;Chung, Young Ryun
    • The Plant Pathology Journal
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    • 제31권2호
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    • pp.152-164
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    • 2015
  • Biological control of major rice diseases has been attempted in several rice-growing countries in Asia during the last few decades and its application using antagonistic bacteria has proved to be somewhat successful for controlling various fungal diseases in field trials. Two novel endophytic Bacillus species, designated strains YC7007 and $YC7010^T$, with antimicrobial, plant growth-promoting, and systemic resistance-inducing activities were isolated from the roots of rice in paddy fields at Jinju, Korea, and their multifunctional activities were analyzed. Strain YC7007 inhibited mycelial growth of major rice fungal pathogens strongly in vitro. Bacterial blight and panicle blight caused by Xanthomonas oryzae pv. oryzae (KACC 10208) and Burkholderia glumae (KACC 44022), respectively, were also suppressed effectively by drenching a bacterial suspension ($10^7cfu/ml$) of strain YC7007 on the rhizosphere of rice. Additionally, strain YC7007 promoted the growth of rice seedlings with higher germination rates and more tillers than the untreated control. The taxonomic position of the strains was also investigated. Phylogenetic analyses based on 16S rRNA gene sequences indicated that both strains belong to the genus Bacillus, with high similarity to the closely related strains, Bacillus siamensis KACC $15859^T$ (99.67%), Bacillus methylotrophicus KACC $13105^T$ (99.65%), Bacillus amyloliquefaciens subsp. plantarum KACC $17177^T$ (99.60%), and Bacillus tequilensis KACC $15944^T$ (99.45%). The DNA-DNA relatedness value between strain $YC7010^T$ and the most closely related strain, B. siamensis KACC $15859^T$ was $50.4{\pm}3.5%$, but it was $91.5{\pm}11.0%$ between two strains YC7007 and $YC7010^T$, indicating the same species. The major fatty acids of two strains were anteiso-$C_{15:0}$ and iso $C_{15:0}$. Both strains contained MK-7 as a major respiratory quinone system. The G+C contents of the genomic DNA of two strains were 50.5 mol% and 51.2 mol%, respectively. Based on these polyphasic studies, the two strains YC7007 and $YC7010^T$ represent novel species of the genus Bacillus, for which the name Bacillus oryzicola sp. nov. is proposed. The type strain is $YC7010^T$ (= KACC $18228^T$). Taken together, our findings suggest that novel endophytic Bacillus strains can be used for the biological control of rice diseases.