• Title/Summary/Keyword: Restriction map

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Genetic Structure of the phnM Gene Encoding Plant-Type Ferredoxin from Pseudomonas sp. strain DJ77 (Pseudomonas sp. strain DJ77에서 Plant-Type의 Ferredoxin을 암호화하는 phnM 유전자의 구조)

  • Kim, Sungje;Kim, Young-Chang
    • Korean Journal of Microbiology
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    • v.34 no.3
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    • pp.115-119
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    • 1998
  • We cloned the 4.8 kb BglII fragment containing genes downstream pHENX7 from Pseudomonas sp. strain DJ77. The restriction map of the resultant clone, recombinant plasmid pYCS500, was determined. Sequencing analysis of the 465 bp HindIII-ClaI fragment revealed an open reading frame of 282 bp that was then designated phnM. The deduced polypeptide is 93 amino acid residues long with a $M_r$ of 10,008. The PhnM has 37.3-53.9% identity with plant-type ferredoxin proteins such as NahT, XylT, DmpQ, AtdS, PhlG, PhhQ and TbuW and contains the motif similar to well-conserved functional domains of those proteins.

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Cloning and Expression of the metE gene coding for homocysteine methyltransferase from the basidiomycete Ganoderma lucidum in E. coli (영지버섯으로부터 homocysteine methyltransferase를 암호화 하는 metE 유전자의 클로닝 및 E. coli에서의 발현)

  • Kim, Hyun-Jeong;Park, Dong-Chul;Lee, Kap-Duk;Lee, Byul-La;Lee, Kap-Rang
    • The Korean Journal of Mycology
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    • v.21 no.4
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    • pp.279-284
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    • 1993
  • The metE gene coding for $N^{5}-methyl-H_{4}-folate;$ homocysteine methyltransferase from the basidiomycete Ganoderma lucidum was cloned by complementation of methionine-requiring mutants of E. coli. The size of a inserted DNA was about 1.54 kb and had 5 restriction enzyme sites. A physical map was constructed. Southern blot analysis confirmed the presence of a transforming DNA in the genome of Ganoderma lucidum. indicating the presence of a single copy.

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Cloning of the Alkaline Phosphatase Gene from Kluyveromyces fragilis

  • Kim, Jong-Guk;Hwang, Seon-Kap;Kwon, Kaeg-Kyu;Nam, Joo-Hyun;Hong, Soon-Duck;Seu, Jung-Hwn
    • Journal of Microbiology and Biotechnology
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    • v.2 no.4
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    • pp.237-242
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    • 1992
  • In order to clone the gene coding for alkaline phosphatase in the yeast Kluyveromyces fragilis, a genomic library was constructed using the yeast-E. coli shuttle vector pHN114 as a cloning vector. From the genomic library, a clone carrying the gene was isolated and the plasmid was designated as pSKH101. A restriction enzyme map was made using this plasmid. Subcloning experiments and complementation studies showed that alkaline phosphatase was active only in the original 3.1 kb insert. Southern hybridization analysis confirmed that the cloned DNA fragment was derived from K. fragilis genomic DNA. Using a minicell experiment, the product of the cloned gene was identified as a protein with a molecular weight of 63 KDa. A 0.6 kb HindIII fragment, which showed promoter activity, was isolated using the E. coli promoter-probe vector pKO-1.

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Design and Implementation of a Object Location Information Search System Based on Web-GIS Services (Web-GIS 서비스 기반의 객체위치정보 탐색 시스템 설계 및 구현)

  • Kim, Tak-Chen;Jung, Hoe-Kyung;Kim, Jin-Soo
    • Proceedings of the Korean Institute of Information and Commucation Sciences Conference
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    • 2007.06a
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    • pp.661-664
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    • 2007
  • Examine method to improve web geography information service system because this paper uses XML and presented specific implementation result. Through internet, it planed various geography information that offer in form of service that do not receive restriction of heterogeneous system environment. Also, did thing that is easy when request service about geography information that user need and deliver fast by purpose. Supplement and to improve open-ended and XML of form normalized use and developed existent web geography information service. So that can use map service in web browser without setup of application program that buy expensive GIS software or offer in each company design and implement.

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Characterization of Spodoptera exigua Nuclear Polyhedrosis Virus Polyhedrin Gene Structure (파밤나방 핵다각체병 바이러스의 다각체 단백질 유전자 구조)

  • 최재영;김우진
    • Journal of Sericultural and Entomological Science
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    • v.38 no.2
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    • pp.144-149
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    • 1996
  • To develope the baculovirus expression vector system (BEVS) using Spodoptera exigua nuclear polyhedrosis virus (SeNPV), we characterized the polyhedrin of SeNPV. The SeNPV polyhedra was irregular and composed of the major protein molecular weight of 30 kDa determined by electronmicroscopy and SDS-AGE analysis, respectively. The nucleotid suquences of 876 bases including the coding region of polyhedrin gene was determined and it was revealed that the polyhedrin gene is located within Xho I 3.0Kb and Nco I 6.0 Kb by Southern blot analysis, respectively. Also, the Xho I 3.0 Kb and the Nco I 6.0 Kb fragments were cloned and restriction enzyme map of these clones were determined.

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A chromosome 1q44 deletion in a 4-month-old girl; The first report in Korea

  • Cho, Joo Hyun;Song, Eun Song;Kim, Hee Na;Oh, Burm Seok;Choi, Young Youn
    • Clinical and Experimental Pediatrics
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    • v.57 no.6
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    • pp.292-296
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    • 2014
  • The deletion of the distal long arm of chromosome 1 is associated with a characteristic facial appearance and a pattern of associated malformations. Characteristic manifestations include a round face with prominent 'cupid's bow' and downturned corners of the mouth, thin vermilion borders of lips, a long upper lip with a smooth philtrum, a short and broad nose, epicanthal folds, apparently low-set ears, micrognathia, microcephaly, abnormal hands and feet, variable cardiac or genital anomalies, moderate to severe mental retardation, and growth retardation. Using fluorescent in situ hybridization (FISH) analysis to map precisely the deletion, we present a case of chromosome 1q44 deletion with craniofacial characteristics, multiple congenital anomalies, and growth and psychomotor retardation. In comparison with other reported cases of 1q43-44 deletion, the subject does not show hydrocephalus, seizure, syn- or polydactyly of hands, and a urogenital anomaly. However, an arachnoid cyst, pinpoint dimple on the midline of the forehead, a right-sided supernumerary nipple and auricular pit, polydactyly of the right foot, adducted thumb, and flexion restriction of the proximal interphalangeal joint with a simian line in both hands were observed additionally.

Molecular Cloning of a $\beta$-D-Galactosidase Gene from Lactococcus lactis subsp. lactis 7962

  • CHANG, HAE-CHOON;YANG-DO CHOI;HYONG-JOO LEE
    • Journal of Microbiology and Biotechnology
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    • v.6 no.6
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    • pp.386-390
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    • 1996
  • The ${\beta}$-galactosidase gene from Lactococcus lactis subsp. lactis ATCC 7962 was cloned and its enzymatic properties were characterized, with a view to assessing its potential use as a selection marker in the food-grade cloning vector. Chromosomal DNA from L. lactis subsp. lactis 7962 was cleaved with PstI and ligated into pBR322 for transformation into Escherichia coli TGl. Transformants showing ${\beta}$-galactosidase activity possessed the pBR322 plasmid containing a 10 kilobase (kb) PstI fragment and this plasmid was named pCKL11. The cloned ${\beta}$-galactosidase gene came from the chromosomal DNA of L. lactis subsp. lactis 7962 was confirmed by Southern hybridization. A restriction map of pCKL11 was constructed from the cleavage of both pCKL11 and the purified 10kb insert fraqment. The. optimum pH of the ${\beta}$-galactosidase determined with the E. coli harboring the pCKL11 was 7.0. The optimum temperature was $50^{\circ}C$, while the pI of the enzyme was 7.4. These values were the same as those of the enzyme from the parent strain.

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Improvement of TDOA-Based Localization Method for Port Logistics Environment (항만 물류 환경을 위한 TDOA 기반 측위 기법의 개선)

  • Choi, Hoon;Ji, Dong-Hwan;Baek, Yun-Ju
    • The Journal of Korean Institute of Communications and Information Sciences
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    • v.34 no.2B
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    • pp.99-106
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    • 2009
  • The tracking information of objects or persons plays the important role for being advanced of the technology in the logistics management or processing. In this paper, we propose the TDOA-based localization method for port logistics environment for obtaining accurate location of a tag which is attached to some objects or persons. The proposed method consists of these modules for precision : An adaptive selection module of base reader, 2.5D locating method and position-restriction method using a map. This paper includes the performance evaluation of those methods. We could see the improved performance in the simulation. And we also implemented the system and achieved the accuracy of DRMS and CEP within 4 meters.

Development of the Priority Decision System for Redevelopment of Agricultural Reservoir (농업용저수지 재개발 우선순위 산정시스템 개발)

  • Kim, Hae-Do;Kim, Sun-Joo;Kim, Phil-Shik
    • Journal of The Korean Society of Agricultural Engineers
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    • v.53 no.2
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    • pp.45-52
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    • 2011
  • This study is to develop a Priority Decision System for Redevelopment (PDSR) which is able to decide the priority for redevelopment of agricultural reservoirs. The major scopes of this research are to make the related GIS data like hydrologic unit map and other thematic maps to determine the suggested priority index (PI), and to develop the PDSR handling the GIS data and calculating weighing factors for the PI. In order to make the weighing factor decision module, the AHP technique was adopted. The result of the weighing factor calculation was showed PC (Possibility Criteria) and RC (Restriction Criteria) were 76% and 24% respectively. Which means that most of the specialist selected PC category prior to RC because of whom to mostly of major technique. So, in order to make more objective result, the selection of specialists is important like environmental activists or local residents and so on. The product from this research can provide more scientific support to decide the priority decision.

Cloning and Sequencing of the phoA Gene which is Regulated by the phoP-phoQ Operon in Pathogenic Enteric Bacteria (병원성장내세균에서 phoP-phoQ operon의 지배를 받는 phoA 유전자의 cloning 및 염기서열결정)

  • Kim, Sung-Kwang;Lee, Tae-Yoon
    • Journal of Yeungnam Medical Science
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    • v.12 no.2
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    • pp.237-245
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    • 1995
  • The DNA fragment containing the phoA of Klebsiella pneumoniae was cloned into pACYC184. The size of the insert was 4.0 kb and the restriction map showed it contained 3 PstI sites and 4 PvuII sites. The nucleotide sequence of the phoA region was determined, which showed strong (80 %) sequence similarity with that of Escherichia coli. This suggested that these two species are phylogenetically very close to each other.

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