• Title/Summary/Keyword: R-package

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A State-space Production Assessment Model with a Joint Prior Based on Population Resilience: Illustration with the Common Squid Todarodes pacificus Stock (자원복원력 개념을 적용한 사전확률분포 및 상태공간 잉여생산 평가모델: 살오징어(Todarodes pacificus) 개체군 자원평가)

  • Gim, Jinwoo;Hyun, Saang-Yoon;Yoon, Sang Chul
    • Korean Journal of Fisheries and Aquatic Sciences
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    • v.55 no.2
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    • pp.183-188
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    • 2022
  • It is a difficult task to estimate parameters in even a simple stock assessment model such as a surplus production model, using only data about temporal catch-per-unit-effort (CPUE) (or survey index) and fishery yields. Such difficulty is exacerbated when time-varying parameters are treated as random effects (aka state variables). To overcome the difficulty, previous studies incorporated somewhat subjective assumptions (e.g., B1=K) or informative priors of parameters. A key is how to build an objective joint prior of parameters, reducing subjectivity. Given the limited data on temporal CPUEs and fishery yields from 1999-2020 for common squid Todarodes pacificus, we built a joint prior of only two parameters, intrinsic growth rate (r) and carrying capacity (K), based on the resilience level of the population (Froese et al., 2017), and used a Bayesian state-space production assessment model. We used template model builder (TMB), a R package for implementing the assessment model, and estimating all parameters in the model. The predicted annual biomass was in the range of 0.76×106 to 4.06×106 MT, the estimated MSY was 0.13×106 MT, the estimated r was 0.24, and the estimated K was 2.10×106 MT.

Effects of Thinning and Climate on Stem Radial Fluctuations of Pinus ponderosa and Pinus lambertiana in the Sierra Nevada

  • Andrew Hirsch;Sophan Chhin;Jianwei Zhang;Michael Premer
    • Journal of Forest and Environmental Science
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    • v.39 no.2
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    • pp.81-95
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    • 2023
  • Due to the multiple ecosystem benefits that iconic large, old growth trees provide, forest managers are applying thinning treatments around these legacy trees to improve their vigor and reduce mortality, especially in the face of climate change and other forest health threats. One objectives of this study was to analyze sub-hourly stem fluctuations of legacy ponderosa (Pinus ponderosa Dougl. Ex P. & C. Laws) and sugar pines (Pinus lambertiana Dougl.) in the mixed-conifer forests of the Sierra Nevada in multiple different radius thinning treatments to assess the short-term effects of these treatments. Thinning treatments applied were: R30C0 (9.1 m radius), R30C2 (9.1 m radius leaving 2 competitors), and RD1.2 (radius equaling DBH multiplied by 1 ft/in multiplied by 1.25). The other objective was to assess climatic drivers of hourly stem fluctuations. Using the dendrometeR package, we gathered daily statistics (i.e. daily amplitude) of the stem fluctuations, as well as stem cycle statistics such as duration and magnitude of contraction, expansion, and stem radial increment. We then performed correlation analyses to assess the climatic drivers of stem fluctuations and to determine which radial thinning treatment was most effective at improving growth. We found an important role that mean solar radiation, air temperature, and relative humidity play in stem variations of both species. One of the main findings from a management perspective was that the RD1.2 treatment group allowed both species to contract less on warmer and higher solar radiation days. Furthermore, sugar pine put on more stem radial increment on higher solar radiation days. These findings suggest that the extended radius RD1.2 thinning treatment may be the most effective at releasing legacy sugar and ponderosa pine trees compared to the other forest management treatments applied.

Changes of ATP Related Compounds of Large Anchovy During Drying and Storage (대멸치의 건조 및 저장 중 ATP 관련화합물의 변화)

  • CHO Young-Je;KIM Tae-Jin;SHIM Kil-Bo;LEE Ho-Su;LEE Nahm-Gul;CHOI Young-Jun
    • Korean Journal of Fisheries and Aquatic Sciences
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    • v.33 no.3
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    • pp.179-183
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    • 2000
  • This study was conducted to examine the changes of contents of ATP related compounds during drying of large anchovy and storage of dried large anchovy (DLA) according to storage temperature and package method. The total content of ATP related compounds of raw large anchovy was $36.0{\mu}mole/g$ and the major ATP related compounds were consisted of IMP and hypoxanthine. The IMP content of DLA was the highest in $20^{\circ}C$ cold-air drying, and the breakdown of IMP was progressed rapidly in $60^{\circ}C$ air drying, followed by $40^{\circ}C$ air drying, sun drying, and $20^{\circ}C$ cold-air drying. During storage of DLA, ATP was not detected while ADP and AMP was detected in a very small amount, and the changes of ATP related compounds were coincided with the changes of contents of IMP, inosine and hypoxanthine. The changes of ATP related compounds with different package method did not show distinct differences, while with different storage temperature showed clear difference. The content of IMP was over $8.88{\mu}mole/g$ on 60 days at $-20^{\circ}C$, while were over $0.83 {\mu}mole/g$ and$ 0.202 {\mu}mole/g$ on 16 days at$ 5^{\circ}C$ and$ 25^{\circ}C$, respectively. These results suggest that the breakdown of IMP depends on storage temperature and frozen storage affects good quality of DLA during storage.

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A Study on the Improvement Method for Health Management of Seafares (상선 승무원들의 건강관리 개선방안 연구)

  • Kim, Jae-Ho
    • Journal of Navigation and Port Research
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    • v.37 no.1
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    • pp.29-34
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    • 2013
  • In this study, the corelation among the knowledge of and attitude to health care and the actual health protective practices of seafarers was surveyed and analyzed in order to provide the management method for improving seafarers' health care. The subjects of this study were 516 seafarers who took refresh training courses in Korea Institute of Maritime and Fisheries Technology. The questionnaire was constructed under the Guidelines for National Health of the Ministry of Health and Welfare and modified for studying seafarers' health state. The collected data were analyzed by SPSS package. The results were as follows: 1) The older, married, religion believer, higher ranker, the man who have longer career have the higher degree of knowledge, attitude, and practice-degree(p<0.05). 2) The degree of knowledge, attitude, and practice are $4.24{\pm}0.35$, $3.45{\pm}0.41$, and $3.39{\pm}0.22$ in mean by 5-score scale, respectably. 3) The corelation among the degree of knowledge, attitude, and practice was significant(r=0.33~0.63, p<0.05).

Time Series Patterns and Clustering of Rotifer Community in Relation with Topographical Characteristics in Lentic Ecosystems (정수생태계의 지형적인 요인 변화와 윤충류 출현 종 수 및 개체군 밀도 변동에 대한 연구)

  • Oh, Hye-Ji;Heo, Yu-Ji;Chang, Kwang-Hyeon;Kim, Hyun-Woo
    • Korean Journal of Ecology and Environment
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    • v.54 no.4
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    • pp.390-397
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    • 2021
  • The time series data of rotifer community focusing on the species number and total density were collected from 29 reservoirs located at Jeonnam Province from 2008 to 2016 quarterly. The reservoirs had similar weather condition during the study period, but their sizes and water qualities were different. To analyze the temporal dynamics of rotifer community, the medians, ranges, outliers and coefficient of variation (CV) value of rotifer species number and abundance were compared. For the temporal trend analysis, time series of each reservoir data were compared and clustered using the dynamic time warping function of the R package "dtwclust". Small-sized reservoirs showed higher variability in rotifer abundance with more frequent outliers than large-sized reservoirs. On the other hand, apparent pattern was not observed for the rotifer species number. For the temporal pattern of rotifer density, COD, phytoplankton abundance fluctuation, and cladoceran abundance fluctuation have been suggested as potential factor affecting the rotifer abundance dynamics.

Media exposure analysis of official sponsors and general companies of mega sport event (메가 스포츠이벤트의 공식스폰서와 일반기업의 미디어 노출 분석)

  • Kim, Joo-Hak;Cho, Sun-Mi
    • Asia-pacific Journal of Multimedia Services Convergent with Art, Humanities, and Sociology
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    • v.8 no.4
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    • pp.171-181
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    • 2018
  • As the proportion of sports events in the sports industry grows, the official sponsor market for sports events is also increasing. But because official sponsors are limited and expensive, some companies approach sporting events by way of Ambush marketing. This study is to analyze the differences of media exposure between official sponsors and general companies of mega sport events. To accomplish the purpose of the study, we collected text articles and analyzed them from the period of 2016 Rio Olympics, one year before the Olympics and one year after the Olympics. Web crawling was performed using Python for the collection of articles. Morphological and frequency analysis was performed using the KoNLP package and the TM package of statistical program R. In addition, the opinions of the related experts group were gathered to classify the companies or organizations in the media as the Organizing Committees for the Olympic Games(OCOGs), official sponsor, and general companies. As a result of the analysis, 5,220 times appeared related to the OCOGs, 7,845 times appeared related to the official sponsor, and 7,028 times appeared related to general companies. There isn't much difference in the frequency of exposure between official sponsors and general companies. It implies that Ambush marketing is recognized as a strategic marketing technique. The International Olympic Committee(IOC) has to recognize these social phenomena and establish reasonable standards for the marketing activities of official sponsors and general companies. And this study will serve as a basis for fair sponsor activities or marketing activities of sports events.

Estimation of Genetic Parameter for Milk Production and Linear Type Traits in Holstein Dairy Cattle in Korea (국내 Holstein 젖소의 유생산 형질과 유방 및 지제 선형심사 형질에 대한 유전모수 추정)

  • Won, J.I.;Dang, C.K.;Lim, H.J.;Jung, Y.S.;Im, S.K.;Yoon, H.B.
    • Journal of agriculture & life science
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    • v.50 no.1
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    • pp.167-178
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    • 2016
  • This study was conducted to estimate genetic parameters for milk production and linear type traits in Holstein dairy cattle in Korea. The data including milk yields, fat yields, protein yields, fat percent, protein percent, somatic score and 15 linear type traits for 10,218 first parity cows collected by Dairy Cattle Improvement Center, National Agricultural Cooperative, Korea, which were calving from January 2009 to April 2013. Genetic and error (co)variances between two traits selected form 19 traits were estimated using bi-trait pairwise analyses with WOMBAT package. The estimated heritabilities for milk yield(MY), fat yield(FY), protein yield(PY), fat percent(FP), protein percent(PP), somatic cell score(SCS), udder depth(UD), udder texture(UT), median suspensory(MS), fore udder attachment(FUA), front teat placement (FTP), rear attachment height(RAH), rear attachment width(RAW), rear teat placement(RTP), front teat length(FTL), foot angle(FA), heel depth(HD), bone quality(BQ), rear legs side view(RLSV), rear legs rear view(RLRV) and locomotion(LC) were 0.128, 0.144, 0.100, 0.273, 0.333, 0.090, 0.179, 0.066, 0.104, 0.109, 0.127, 0.099, 0.059, 0.069, 0.154, 0.014, 0.010, 0.052, 0.065, 0.175 and 0.031, respectively. Among the genetic correlations, UD, UT, FTP, RAW, FTL, FA and RLSV with MY were -0.334, 0.271, 0.445, 0.544, 0.076, -0.281 and -0.228, respectively, and MS, FTP, RTP, FTL, FA, BQ, RLSV, RLRV and LC with PP were -0.147, -0.182, -0.262, -0.136, 0.355, 0.311, 0.135, 0.233 and 0.143, respectively. Especially, MY had the highest positive genetic correlation with RAW (0.544), while SCS had the highest negative genetic correlation with LC (-0.603). FP had negative genetic correlation with most udder traits, whereas, FP had positive genetic correlation with leg and hoof traits (0.056 - 0.355).

A Study on the Self-care of the Menopausal Symptoms of Middle-Aged Women (중년 여성의 갱년기 증상과 자기건강관리 (Self-Care)와의 관련성 조사연구)

  • 김희은;김초강
    • Korean Journal of Health Education and Promotion
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    • v.10 no.1
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    • pp.72-86
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    • 1993
  • The purpose of this study is to find out the menopausal symptom of middle-aged women and their self-care on it. This study also intended to awaken the relationship of the menopausal symptom and self-care and to provide basic data on the health education of middle-aged women. For this purpose, the study (1) identified respondents background variables, (2) found menopausal symptom and the state of self-care, (3) analyzed relationship between general character, menopausal symptom, and self-care, (4) analyzed the relationship of menopausal symptom and self-care for 543 random sampled women in City of Incheon. The questionnaire consisted of 25 questions on the menopausal symptom interview by Neugarton translated by Jung Hae Ran(1985) and questions of the self-care inventory by Orem reconstructed by Sung Moon Hee(1988). The data were analyzed by using frequency, percentage, t-test, X²-test, pearson's correlation coefficient with SPSS statistical package. The results of this study could be summed up as follows ; 1. The Degree of menopausal symptom were graded from 25 to 75. (x 40.85, s. d. 8. 6.) 2. The test of relationship between the individual background and the menopausal symptom revealed that there seemed to be statistically significant correlation between the sexual life, life-content, the level of education, menstruation(p<0.000). 3. In the test of relationship between the individual background and the self-care process, (1) in case of insight of symptom, there seemed to be statistically significant correlation between the self-content(r=0.1463), sexual life(r= -0.1376), menstruation(r=0.1561), and artificial abortion(r=0.1577), (p<0.001), (2) In case of self-health control, there seemed to be statistical correlation between the states of menstruation and the number of induced abortion. (3) In case of self-health decision, there seemed to be statistically significant correlation between the number of visiting hospitals or clinics and the level of education(r=0.106), the self-content(r=0.1235), induced abortion(r=0.1343) (p<0.0000). And also individual background can show the 40.21 percent of self-health maintenance. 4. The relationship between menopausal symptom and self-care has a significant meaning to the insight of symptom, self-health decision according to the groups of menopausal symptom(p<0.000), but it doesn't have any meaning to self-health control. And self-health maintenance can manifest the 19.88 percent of menopausal symptom.

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A Benchmark of Open Source Data Mining Package for Thermal Environment Modeling in Smart Farm(R, OpenCV, OpenNN and Orange) (스마트팜 열환경 모델링을 위한 Open source 기반 Data mining 기법 분석)

  • Lee, Jun-Yeob;Oh, Jong-wo;Lee, DongHoon
    • Proceedings of the Korean Society for Agricultural Machinery Conference
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    • 2017.04a
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    • pp.168-168
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    • 2017
  • ICT 융합 스마트팜 내의 환경계측 센서, 영상 및 사양관리 시스템의 증가에도 불구하고 이들 장비에서 확보되는 데이터를 적절히 유효하게 활용하는 기술이 미흡한 실정이다. 돈사의 경우 가축의 복지수준, 성장 변화를 실시간으로 모니터링 및 예측할 수 있는 데이터 분석 및 모델링 기술 확보가 필요하다. 이를 위해선 가축의 생리적 변화 및 행동적 변화를 조기에 감지하고 가축의 복지수준을 실시간으로 감시하고 분석 및 예측 기술이 필요한데 이를 위한 대표적인 정보 통신 공학적 접근법 중에 하나가 Data mining 이다. Data mining에 대한 연구 수행에 필요한 다양한 소프트웨어 중에서 Open source로 제공이 되는 4가지 도구를 비교 분석하였다. 스마트 돈사 내에서 열환경 모델링을 목표로 한 데이터 분석에서 고려해야할 요인으로 데이터 분석 알고리즘 도출 시간, 시각화 기능, 타 라이브러리와 연계 기능 등을 중점 적으로 분석하였다. 선정된 4가지 분석 도구는 1) R(https://cran.r-project.org), 2) OpenCV(http://opencv.org), 3) OpenNN (http://www.opennn.net), 4) Orange(http://orange.biolab.si) 이다. 비교 분석을 수행한 운영체제는 Linux-Ubuntu 16.04.4 LTS(X64)이며, CPU의 클럭속도는 3.6 Ghz, 메모리는 64 Gb를 설치하였다. 개발언어 측면에서 살펴보면 1) R 스크립트, 2) C/C++, Python, Java, 3) C++, 4) C/C++, Python, Cython을 지원하여 C/C++ 언어와 Python 개발 언어가 상대적으로 유리하였다. 데이터 분석 알고리즘의 경우 소스코드 범위에서 라이브러리를 제공하는 경우 Cross-Platform 개발이 가능하여 여러 운영체제에서 개발한 결과를 별도의 Porting 과정을 거치지 않고 사용할 수 있었다. 빌트인 라이브러리 경우 순서대로 R 의 경우 가장 많은 수의 Data mining 알고리즘을 제공하고 있다. 이는 R 운영 환경 자체가 개방형으로 되어 있어 온라인에서 추가되는 새로운 라이브러리를 클라우드를 통하여 공유하기 때문인 것으로 판단되었다. OpenCV의 경우 영상 처리에 강점이 있었으며, OpenNN은 신경망학습과 관련된 라이브러리를 소스코드 레벨에서 공개한 것이 강점이라 할 수 있다. Orage의 경우 라이브러리 집합을 제공하는 것에 중점을 둔 다른 패키지와 달리 시각화 기능 및 망 구성 등 사용자 인터페이스를 통합하여 운영한 것이 강점이라 할 수 있다. 열환경 모델링에 요구되는 시간 복잡도에 대응하기 위한 부가 정보 처리 기술에 대한 연구를 수행하여 스마트팜 열환경 모델링을 실시간으로 구현할 수 있는 방안 연구를 수행할 것이다.

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Exploring the Educational Use of Artificial Intelligence based on R mapping - Focusing on Foreign Publication Analysis Results - (R 매핑을 이용한 인공지능의 교육적 활용 탐색 -국외 문헌 분석을 중심으로-)

  • Kim, Hyung-Uk;Mun, Seong-Yun
    • Journal of The Korean Association of Information Education
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    • v.24 no.4
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    • pp.313-325
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    • 2020
  • There is a growing interest and need for the educational use of artificial intelligence as artificial intelligence technologies such as machine learning and deep learning, the core technologies of the intelligent information society, owing to the recent innovative technological advances. Consequently, the Ministry of Education announced the First Information Education Comprehensive Plan for introducing artificial intelligence competence enhancing education into the education field in preparation for the intelligent information society based on artificial intelligence technologies. Therefore, this study collected 416 overseas papers related to the educational use of artificial intelligence from the Web of Science (WoS) in order to explore the potential for using artificial intelligence educationally. This study analyzed the research status and research topic by country, citation counts, network analysis on keywords of the collected data by using the bibliometrix package of R program. Through this, it was possible to identify the research trend on the educational use of artificial intelligence, currently being conducted in foreign countries. It is believed that it will be possible to obtain implications for the topics and directions to be studied in the information education for strengthening artificial intelligence education based on the results of this study.