• Journal of Applied Biological Chemistry
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• v.64 no.2
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• pp.127-131
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• 2021

Perilla frutescens var. crispa (Pfc), a herb belonging to the mint family (Lamiaceae), has been used for medicinal and aromatic purposes. In the present study, we analyzed the variation in the chemical composition of essential oils (EOs) obtained from five different genotypes of Pfc collected from different regions. Based on principal component analysis (PCA) and hierarchical cluster analysis (HCA), we identified three groups: PA type containing perillaldehyde, PP type containing dillapiole, and 2-acetylfuran type. To assess the correlation between EO components and antimicrobial activities, we compared classification results generated by PCA and HCA based on antimicrobial activity values. The findings suggested that the major compounds obtained from EOs of Pfc are responsible for their antimicrobial activities. Chemotypes of Pfc plants are essentially qualitative traits that are important for breeders. The present findings provide potential information for breeding Pfc as an antimicrobial agent.

• Journal of Microbiology and Biotechnology
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• v.33 no.8
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• pp.1013-1022
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• 2023

Arbuscular mycorrhizal fungi (AMF) are widespread soil endophytic fungi, forming mutualistic relationships with the vast majority of land plants. Biochar (BC) has been reported to improve soil fertility and promote plant growth. However, limited studies are available concerning the combined effects of AMF and BC on soil community structure and plant growth. In this work, a pot experiment was designed to investigate the effects of AMF and BC on the rhizosphere microbial community of Allium fistulosum L. Using Illumina high-throughput sequencing, we showed that inoculation of AMF and BC had a significant impact on soil microbial community composition, diversity, and versatility. Increases were observed in both plant growth (the plant height by 8.6%, shoot fresh weight by 12.1%) and root morphological traits (average diameter by 20.5%). The phylogenetic tree also showed differences in the fungal community composition in A. fistulosum. In addition, Linear discriminant analysis (LDA) effect size (LEfSe) analysis revealed that 16 biomarkers were detected in the control (CK) and AMF treatment, while only 3 were detected in the AMF + BC treatment. Molecular ecological network analysis showed that the AMF + BC treatment group had a more complex network of fungal communities, as evidenced by higher average connectivity. The functional composition spectrum showed significant differences in the functional distribution of soil microbial communities among different fungal genera. The structural equation model (SEM) confirmed that AMF could improve the microbial multifunctionality by regulating the rhizosphere fungal diversity and soil properties. Our findings provide new information on the effects of AMF and biochar on plants and soil microbial communities.

• Journal of the Korean Society of Environmental Restoration Technology
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• v.6 no.1
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• pp.15-27
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• 2003

A method of conserving the vegetation at Mt. Chonggye was established to persue a practical management of the natural ecosystem by the vegetative composition analysis. As a result, the vegetation of surveyed areas was classified into two communities and four subcommunities in Mt. Chonggye. Potentilla fragarioides var. major community, known as the roadside plant community, distributed near trails under heavy human impacts. Potentilla fragarioides var. major community included two subcommunities : Digitaria sanguinalis-Ambrosia artemisiifolia var. elatior subcommunity and Rhus chinensis subcommunities. In these communiyies, there were many naturalized plant species such as Aster pilosus and Artemisia princeps var. orientalis, known as heliophilous plant. Results indicated that the vegetation had been affected by intensive human activities. It is necessary to control the naturalized plant species such as Aster pilosus for conservation of the ecosystem and nature in this area. Quercus mongolica community, a common coppice woodland in central Korea, was mostly distributed around mountain tops and ridges above 529 m altitute. In the valley where the forests well conserved, the Quercus mongolica community contained the Syneilesis aconitifolia-Hemerocallis lilioasphodelus subcommunity. On the other hand, Potentilla dickinsii subcommunity was dominated in dry rocky ridge areas. In these areas, however, the vegetation and forest soil was not properly managed for conservation.

• Proceedings of the Korean Society of Plant Biotechnology Conference
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• 2005.11a
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• pp.361-366
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• 2005

Opium poppy (Papaver somniferum L.) is one of the most important medicinal plants, which is used as a sole commercial source of narcotic analgesic, morphine. The transformant of opium poppy we have established by infection of Rhizobium rhizogenes (formerly Agrobacterium rhizogenes) strain MAFF03-01724 showed aberrant morphology and altered opium alkaloid composition. The major alkaloid produced by this transformant was thebaine (16.3%, opium dry weight) instead of morphine. It is likely that this 'thebaine poppy' phenotype was caused by the integration of T-DNA(s) into the poppy genome DNA, and their inserted loci are of great interest. To gain an insight into the mechanism of nonnarcotic thebaine accumulation for the further approach toward the creation of 'codeine poppy' which produces codeine as a major alkaloid, the genetical and morphological analyses on the transformant was carried out. Here we report the results of the detailed analysis on the T-DNA inserted loci of T0 transfromant and the correlation between opium alkaloid composition and segregated T-DNA integration pattern in the self-pollinated T1 transformants.

• Journal of Plant Biotechnology
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• v.49 no.1
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• pp.46-60
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• 2022

The genetic variability and population structure of apple mosaic virus (ApMV) have been studied; however, synonymous codon usage patterns influencing the survival rates and fitness of ApMV have not been reported. Based on phylogenetic analyses of 52 ApMV coat protein (CP) sequences obtained from apple, pear, and hazelnut, ApMV isolates were clustered into two groups. High molecular diversity in GII may indicate their recent expansion. A constant and conserved genomic composition of the CP sequences was inferred from the low codon usage bias. Nucleotide composition and relative synonymous codon usage (RSCU) analysis indicated that the ApMV CP gene is AU-rich, but G- and U-ending codons are favored while coding amino acids. This unequal use of nucleotides together with parity rule 2 and the effective number of codon (ENC) plots indicate that mutation pressure together with natural selection drives codon usage patterns in the CP gene. However, in this combination, selection pressure plays a more crucial role. Based on principal component analysis plots, ApMV seems to have originated from apple trees in Europe. However, according to the relative codon deoptimization index and codon adaptation index (CAI) analyses, ApMV exhibited the greatest fitness to hazelnut. As inferred from the results of the similarity index analysis, hazelnut has a major role in shaping ApMV RSCU patterns, which is consistent with the CAI analysis results. This study contributes to the understanding of plant virus evolution, reveals novel information about ApMV evolutionary fitness, and helps find better ApMV management strategies.

• Asian-Australasian Journal of Animal Sciences
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• v.2 no.1
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• pp.27-34
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• 1989

Different fractions of maize plant and whole mixed fodder were analysed for their chemical composition and dry matter digestibility (DMD). Highest crude protein (CP) values were found in leaves as compared to the other portions. Younger plants contained more CP as compared to the matured ones. The crude fiber (CF) content of various fractions of the plant ranged between 19.12 to 35.60% with maximum values in the bottom portion of the stem. Matured plants contained more CF. The analysis of cell wall constituents indicated that the maximum values for neutral detergent fiber (NDF) were found in the bottom portion and in the whole mixed plant. The highest levels of acid detergent fiber (ADF) were observed in bottom fraction followed by whole mixed plant, whereas the other plant fractions did not show any differences. Variation in acid detergent lignin (ADL) values existed in different fractions of the plant and the lowest were in the top portion of the stem. Although there existed a variation in the mineral composition of different fractions of the plants, the results were non significant. Maximum DMD was found in leaves followed by the whole mixed plant, middle and bottom portion of the stem. The values of DMD were higher in younger plants as compared to the matured ones. It may be concluded that younger plants and the upper portion of the plants have a higher nutritive value as compared to the matured plants and lower portion of the plants.

• Journal of The Korean Society of Grassland and Forage Science
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• v.24 no.4
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• pp.293-300
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• 2004

This study was carried out to investigate the ecological behaviour forage value and similarity among the plant communities of the grazing pasture near Witzenhausen in middle part of Germany. Sixteen plant communities of the different grazing pasture were mostly the Molinio-Arrhenatheretea and Festuco-Brometea, and those were named the class of plant sociological nomenclature. The ecological behaviour and forage value of the communities except mesobromion(half dry grassland community) were relatively good for forage production. The correlation coefficient between class No. 14 and 12 of plant communities was highest, and the similarity among the communities were greatly affected by botanical composition. The resemblance measure of the cluster-analysis by complete-linkage-method for the similarity among plant communities was better the euclidean distance than those of others. The clustering analysis showed that the communities of relatively similar botanical composition were closely grouped.

• Plant Resources
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• v.8 no.3
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• pp.244-249
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• 2005

The growth charateristics and karyotypes of Aster spathulifolius collected from 5 sites including coastal and island region on the Korean peninsula, were analysed. Several morphological characteristics of the plants such as leaf length, leaf width, top internode, medium internode, spike branching, flower diameter, number of petal, leaf color, leaf form, stem and leaf hair, viscosity, and serration of the plants were distinctly different depending on the native region from which they were collected. Karyotypic analysis showed that the chromosome number was all diploid (2n=18), with one pair of submetacentric satellite chromosomes. The chromosome composition included 7 pairs of metacentric chromosomes and 2 pairs of submetacentric chromosomes in all plants. However, chromosome order and the ranges of the chromosome lengths were a little different from plant to plant according to their native growing regions. The plants from Geoje-Do especially showed large differences in the chromosome lengths between the longest and the shortest compared to the plants from other places. This results provide important data to support the classification of the species into several sub-species.

• Asian-Australasian Journal of Animal Sciences
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• v.23 no.1
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• pp.61-67
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• 2010

The chemical components in plant cuticular wax can be used as markers to estimate the species composition of the diet of grazing animals. In this experiment, composition of the diet of yak on the Qinghai-Tibetan plateau was estimated using n-alkane analysis. During the grazing period, samples of whole plants of the species present, plus fecal samples voided by the yak, were collected, air-dried and ground prior to the extraction of cuticular wax n-alkanes. The species composition of the yak diets was estimated by relating fecal alkane contents to those of the plant species, using the 'ATWHAT'software package. The results showed that the n-alkane technique can detect the main dietary components selected by yak. The diet consumed by yak contained 33% Kobresia humilis, 67% Stipa aliena in summer pasture; 26% Potentilla anserine, 74% Carex qinghaiensis in autumn pasture; 52% Carex qinghaiensis, 32% Heteropappus bowerii and 16% Saussurea semifasciata in winter pasture and 5% Carex qinghaiensis, 95% Achnatherum splendens in spring pasture. The apparent selection for forbs is likely to be a reason for nutritional constraint of yak inhabiting alpine environments.

• The Korean Journal of Food And Nutrition
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• v.29 no.2
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• pp.153-161
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• 2016

This study investigated the chemical composition of Solidago virga-aurea var. asiatica Nakai essential oils collected using different extraction methods. The essential oils obtained by simultaneous steam distillation extraction (SDE) and hydrodistillation extraction (HDE) methods from the aerial parts of Solidago virga-aurea var. asiatica Nakai were analyzed by GC and GC-MS. Ninety-nine volatile flavor compounds were identified in the essential oil produced from Solidago virga-aurea var. asiatica Nakai using the SDE method. These compounds were classified into eight categories in terms of chemical functionality: 26 hydrocarbons, 8 aldehydes, 36 alcohols, 7 ketones, 12 esters, 5 oxides and epixides, 4 acids, and a miscellaneous one. Spathulenol (15.66%) was the most abundant compound. Ninety-eight compounds including of 35 hydrocarbons, 6 aldehydes, 29 alcohols, 6 ketones, 10 esters, 4 oxides and epixides, 7 acids, and a miscellaneous one were identified in the essential oil from the plant using the HDE method. Hexadecanoic acid (24.74%) was the most abundant compound. The chemical composition of Solidago virga-aurea var. asiatica Nakai essential oils extracted by SDE and HDE methods are characterized by high content of sesquiterpene alcohols and acids, respectively. The extraction methods may be influenced in the chemical composition of natural plant essential oils.