• Genomics & Informatics
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• v.12 no.3
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• pp.80-86
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• 2014

Foldback intercoil (FBI) DNA is formed by the folding back at one point of a non-helical parallel track of double-stranded DNA at as sharp as $180^{\circ}$ and the intertwining of two double helixes within each other's major groove to form an intercoil with a diameter of 2.2 nm. FBI DNA has been suggested to mediate intra-molecular homologous recombination of a deletion and inversion. Inter-molecular homologous recombination, known as site-specific insertion, on the other hand, is mediated by the direct perpendicular approach of the FBI DNA tip, as the attP site, onto the target DNA, as the attB site. Transposition of DNA transposons involves the pairing of terminal inverted repeats and 5-7-bp tandem target duplication. FBI DNA configuration effectively explains simple as well as replicative transposition, along with the involvement of an enhancer element. The majority of diverse retrotransposable elements that employ a target site duplication mechanism is also suggested to follow the FBI DNA-mediated perpendicular insertion of the paired intercoil ends by non-homologous end-joining, together with gap filling. A genome-wide perspective of transposable elements in light of FBI DNA is discussed.

• Journal of Korea Water Resources Association
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• v.56 no.3
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• pp.211-224
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• 2023

In this study, a soil moisture estimation was performed using the Water Cloud Model (WCM), a backscatter model that considers vegetation based on SAR (Synthetic Aperture Radar). Sentinel-1 SAR and Sentinel-2 MSI (Multi-Spectral Instrument) images of a 40 × 50 km² area including the Yongdam Dam watershed of the Geum River were collected for this study. As vegetation descriptor of WCM, Sentinel-1 based vegetation index RVI (Radar Vegetation Index), depolarization ratio (DR), and Sentinel-2 based NDVI (Normalized Difference Vegetation Index) were used, respectively. Forward modeling of WCM was performed by 3 groups, which were divided by the characteristics between backscattering coefficient and soil moisture. The clearer the linear relationship between soil moisture and the backscattering coefficient, the higher the simulation performance. To estimate the soil moisture, the simulated backscattering coefficient was inverted. The simulation performance was proportional to the forward modeling result. The WCM simulation error showed an increasing pattern from about -12dB based on the observed backscattering coefficient.

• Journal of the Korean association of regional geographers
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• v.16 no.4
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• pp.339-354
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• 2010

In this study, diurnal and intra-seasonal variations of summertime temperature lapse rate (TLR) by synoptic weather conditions in a mountainous basin are examined based on hourly temperature data observed in 2009 summer at an Automatic Weather Station (AWS) network deployed in Haean basin (called Punch Bowl), Yanggu in the Republic of Korea. Summertime average TLR between the top and bottom of the basin is $-0.53^{\circ}C$/100m. Due to its diurnal variations, TLR shows the lowest by $-0.25^{\circ}C$/100m at 6AM, while it maximizes up to $-0.85^{\circ}C$/100m between 4PM~5PM. Comparisons of daily average TLRs by synoptic weather patterns reveal that the magnitude of TLRs is greatest in the order of rainy days ($-0.63^{\circ}C$/100m), heavy rainfall days ($-0.53^{\circ}C$/100m), partly cloudy days ($-0.47^{\circ}C$/100m), and sunny days ($-0.39^{\circ}C$/100m). At dawn on sunny days in summer, strong cooling pools accompanying temperature inversion layers are formed within the basin, while on heavy rainfall days, warming pools are observed due to relatively low TLRs associated with the reduction of surface radiation cooling by clouds.

• Korean Journal of Plant Tissue Culture
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• v.25 no.2
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• pp.75-80
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• 1998

Disbudded epicotyl cuttings from light-grown 6-day-old seedings of Vigna angularis Owhi et Ohashi were preincubated in $2\;\times\;10^{-4}M$ IAA solution for 48 hr to promote adventitious root formation in upright or inverted direction and then incubated in upright direction for 96 hr. Adventitious root formation occurred only at the morphological base of the cuttings which were preincubated in upright direction, while at the both ends in inverted direction. IAA treatment enhanced the adventitious root formation in all cuttings regardless of their orientation during preincubation. To elucidate localized root development, the activity of enzymes involved in root initiation and development was measured 24 hr, 48 hr, and 148 hr after epicotyl incubation. IAA oxidase, peroxidase and catalase were assayed in the apical, middle and basal segment of the epicotyls, and their fresh weight and length were measured. Elongation occurred the most in the upper segment of the epicotyl while fresh weight gain was the most in the basal segment. At root initiation phase, 24 hr after incubation IAA peroxidase and catalase activities appeared high at rooting zone while IAA oxidase activity was low at both ends, IAA oxidase and peroxidase activities declined at the rooting zone during the adventitious root formation at 48 ht. Inversion of cuttings during preincubation caused a chrange of enzyme activities along their epicotyl cuttings. Only peroxidase activity showed a high correlation with root initiation. Therefore, the biochemical change is highly correlated with change in IAA level in the rooting zone of the epicotyl, resulting in root formation in unusual rooting zone of epicotyl.

• Korean Journal of Soil Science and Fertilizer
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• v.44 no.6
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• pp.1035-1041
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• 2011

Salinity of soil under the plastic film houses in Korea is known as a significant factor to lower the crop production and to hamper the sustainable agricultural land management. In this study we propose a field monitoring technique to examine the methods applied to minimize the adverse effect of salts in soil based on the relationship between soil electrical characteristics and soil properties. Field experiments for 4 different treatments (water only, fertilizer only, DTPA only, and DTPA and fertilizer together) were conducted on soils at the plastic film house built for cultivating a cucumber plant located at Chunan-si, Chungchungnam-do in Korea. The electrical resistivity was measured by both a dipole-dipole and wenner multi-electrodes array method. After the electrical resistivity measurement we also measured the soil water content, temperature, and electrical conductivity on surface soil. The resulted image of the interpreted resistivity by the inversion technique presented a unique spatial distribution depending on the treatment, implying the effect of the different chemical components. It was also highly suspected that resistivity response changed with the nutrients level, suggesting that our proposed technique could be the effective tool for the monitoring soil water as well as nutrient during the cropping period. Especially, subsoils under DTPA treatment at 40 to 60 cm depth typically presented lower soil water accumulation comparing to subsoils under non-DTPA treatment. It is considered that DTPA resulted in increase of a root water uptake. However, our demonstrated results were mainly based on qualitative comparison. Further experiments need to be conducted to monitor temporal changes of electrical resistivity using time lapse analysis, providing that a plant root activity difference based on changes of soil water and nutrients level in time.

• Journal of the Computational Structural Engineering Institute of Korea
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• v.34 no.3
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• pp.167-174
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• 2021

Recent investigation into the integrity of nuclear containment buildings has highlighted the importance of developing an elaborate diagnostic method to evaluate the distribution and size of cavities inside concrete walls. As part of developing such a method, this paper presents a finite element approach to modeling elastic waves propagating in the containment building walls of a nuclear power plant. We introduce a perfectly matched layer (PML) wave-absorbing boundary to limit the large-scale nuclear containment wall to the region of interest. The formulation results in a semi-discrete form with symmetric damping and stiffness matrices. The transient elastic wave equations for a mixed unsplit-field PML were solved for displacement and stresses in the time domain. Numerical results show that the sensitivity of displacement, velocity, acceleration, and stresses is large depending on the size and location of the cavity. The dynamic response of the wall slightly differs depending on the existence of the containment liner plate. The results of this study can be applied to a full-waveform inversion approach for characterizing cavities inside a containment wall.

• Korean Journal of Agricultural and Forest Meteorology
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• v.3 no.4
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• pp.199-205
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• 2001

This study was conducted to figure out temperature profiles of a partially developed paddy rice canopy, which are necessary to run plant disease forecasting models. Air temperature over and within the developing rice canopy was monitored from one month after transplanting (June 29) to just before heading (August 24) in 1999 and 2001. During the study period, the temporal march of the within-canopy profile was analyzed and an empirical formula was developed for simulating the profile. A partially developed rice canopy temperature seemed to be controlled mainly by the ambient temperature above the canopy and the water temperature beneath the canopy, and to some extent by the solar altitude, resulting in alternating isothermal and inversion structures. On sunny days, air temperature at the height of maximum leafages was increased at the same rate as the ambient temperature above the canopy after sunrise. Below the height, the temperature increase was delayed until the solar noon. Air temperature near the water surface varied much less than those of the outer- and the upper-canopy, which kept increasing by the time of daily maximum temperature observed at the nearby synoptic station. After sunset, cooling rate is much less at the lower canopy, resulting in an isothermal profile at around the midnight. A fairly consistent drop in temperature at rice paddies compared with the nearby synoptic weather stations across geographic areas and time of day was found. According to this result, a cooling by 0.6 to 1.2$^{\circ}C$ is expected over paddy rice fields compared with the officially reported temperature during the summer months. An empirical equation for simulating the temperature profile was formulated from the field observations. Given the temperature estimates at 150 cm above the canopy and the maximum deviation at the lowest layer, air temperature at any height within the canopy can be predicted by this equation. As an application, temperature surfaces at several heights within rice fields were produced over the southwestern plains in Korea at a 1 km by 1km grid spacing, where rice paddies were identified by a satellite image analysis. The outer canopy temperature was prepared by a lapse rate corrected spatial interpolation of the synoptic temperature observations combined with the hourly cooling rate over the rice paddies.

• Korean Journal of Soil Science and Fertilizer
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• v.17 no.2
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• pp.108-113
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• 1984

To find out the differences in micro-meteorological changes in the rice plant canopy at the different growing stages, Seokwang-byo, a high yielding variety, was cultivated with three planting densities of 50, 80 and 110 hills per $3.3m^2$ in 1982, and Seokwangbyo and Chucheong-byo, a local variety, were planted with a density of 80 hills per $3.3m^2$. Air temperature in plant canopies, water and soil temperatures were continuously monitored throughout the growing period. The relationship between solar radiation interception and leaf area indices at different height in the canopy also was studied. The results were as follows: 1. Air temperature in the densely planted canopy was 1 to $1.5^{\circ}C$ higher than that in the sparsely planted one at the early growing stage, but was inverted after 60 days of transplanting. The vertical distribution of temperature in the canopies showed that air temperature at 10 cm height from the ground was higher than that at 30 cm height. The temperature inversion occurred showing lower temperature at the 10 cm height than at the 30 cm height. 2. The highest temperature of a day in the canopy occurred at 14:00 to 15:00 Korean Standard Time same as that of air temperature, but approached to the solar noon time as the plants grew thick. 3. The air temperature in the canopy became higher than water temperature when the leaf area indices were 4.6 for Chucheongbyo and 5.2 for Seokwangbyo, and the light penetration ratios were 40 percents. 4. Light extinction coefficients of the 50 to 70 cm layer of the canopies were 0.3 to 0.5 but decreased at the lower layers. 5. Albedo of the canopies was 0.4 in the morning and evening while that was about 0.25 at noon. The difference in albedo between Seokwangbyo and Chucheongbyo could be recognized with the difference in leaf structure.

• Korean Journal of Food Science and Technology
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• v.32 no.6
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• pp.1278-1284
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• 2000

The study was performed to elucidate the effects of ethylene-absorbent on the quality of 'Fuyu' persimmon fruits in the MA package. Five persimmons were packed in a MA package film (low density polyethylene, 0.055 mm film thickness), and stored at $-0.5^{\circ}C$ for 60 days. Two persimmons were repacked in a MA package with or without ethylene absorbent $(1\;M\;KMnO_4+zeolite)$ and stored at $-0.5^{\circ}C$. Ten days later, these packages was moved to $2^{\circ}C$ or $25^{\circ}C$ storage room to examine the effect of the ethylene-absorbent on the quality of the fruits. Ethylene removal by enclosed ethylene absorbent in MA packaging reduced the rate of fruit respiration at $25^{\circ}C$, so that $O_2$ and $CO_2$ concentration in packing were maintained higher and lower, respectively, compared to control. These effects were not observed, however, in $2^{\circ}C$ post-storage. Fruit firmness and sugar composition were also influenced by ethylene absorbent, showing more delayed flesh softening and higher sucrose concentration in ethylene absorbent treated fruits than control. But ethylene-absorbent treatment lowered glucose and fructose concentration. That shows that ethylene could influence on sugar composition by inhibiting sucrose inversion to glucose and fructose. The production of ethanol and acetaldehyde was reduced by ethylene removal, but the effect was not so high as other quality indices.