• Title/Summary/Keyword: Pedigree selection

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Influence of Amount of Pedigree Information and Parental Misidentification of Progeny on Estimates of Genetic Parameters in Jeju Race Horses (제주마 집단의 혈연 정보량과 정보 오류가 유전 모수 추정치에 미치는 영향)

  • Kim, Nam-Young;Lee, Sung-Soo;Yang, Young-Hoon
    • Journal of Embryo Transfer
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    • v.29 no.3
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    • pp.289-296
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    • 2014
  • The pedigree information and race records of 1,000 m finishing time of Jeju race horses at KRA were used to study the effect of amount of pedigree information and parental misidentification on the estimates of genetic parameters. The modified data sets were made at the range of 2.5 to 25% parental misidentifications or loss of parental information of individuals with an increment of 2.5 percent. For each incremental level, 20 randomly replicated data sets were obtained and analyzed by single-trait analysis with a DF-REML(AI) algorithm. As the rate of misidentification increased or the amount of pedigree information decreased, the estimates of fraction of additive genetics variance component gradually decreased almost linearly (p<0.05), while the estimated fractions of error variance and permanent environmental variance components gradually increased for the finishing time. Regression coefficients of the percentage amount of both parents' information loss and incorrect pedigree information on additive genetic variances were -0.079 and -0.114, respectively (p<0.01). The estimate of heritability decreased by 0.92% for one percent loss of both parents' information and 1.39% for one percent increase of both parental misidentifications of progeny (p<0.01). For the consideration of probable incorrect and missing parent information of progeny in this early population of Jeju horses, the estimates of additive genetic parameters would be biased downward about ten percent. This results indicate that the amount of pedigree information loss and misidentification of progeny would severely affect estimates of genetic parameters and would reduce genetic gains for selection in Jeju horse population.

Prediction Models for Racing Performance of Domestic Progeny of Thoroughbreds

  • Lee, Jeong-Ran;Lee, Jin-Woo;Kim, Hee-Bal;Oh, Hee-Seok
    • Journal of Animal Science and Technology
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    • v.52 no.6
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    • pp.459-466
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    • 2010
  • In this study, we suggest an objective standard in selection of candidate horse mates. Korea Racing Authority provided racing records and pedigree information of 44 sires and 954 dams. The datasets were used to predict Racing Indices represented by the averages of earnings earned by offspring for each dam and sire that indicate the racing performance of its domestic progeny. Proportion of wins and second places to the number of taken races and the mean of distances for the won races of a sire were significant factors in linear model with minimum prediction errors. For dam, those factors were the average of earned money per race, number of outstanding broodmares in pedigree, and the comparable index which indicates the relative affinity with its mate. We can use the resultant model for a horse mate by choosing one of the candidates with the largest predicted value for hypothetical offspring.

Breeding Process and Agronomic Traits for New Burley Tobacco Variety, KB 301 (버어리종 고 DVT 계통 KB 301의 육성경과 및 농경적 특성)

  • 조천준;정석훈;배성국;최상주;김도연
    • Journal of the Korean Society of Tobacco Science
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    • v.24 no.2
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    • pp.130-132
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    • 2002
  • The new burley tobacco variety, KB 301, was developed by the cross combination ’(Ky 17 x TI 1068)F$_4$ x TC 613’. The modified pedigree breeding method was used in the selection procedures. The agronomic traits and chemical constituents of KB 301 were very similar to those of Burley 21. But KB 301 had significantly higher content of total DVT than Burley 21. KB 301 was also resistant to black shank, TMV and PVY.

Inbreeding Levels and Pedigree Structure of Landrace, Yorkshire and Duroc Populations of Major Swine Breeding Farms in Republic of Korea

  • Kim, Sidong;Salces, Agapita;Min, Hongrip;Cho, Kwanghyun;Kim, Heebal
    • Asian-Australasian Journal of Animal Sciences
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    • v.19 no.9
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    • pp.1217-1224
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    • 2006
  • The registration data of 15 populations from nine major swine breeding farms were investigated to check levels of inbreeding and the current status of pedigree structures of breeding stocks. The average rate of inbreeding per generation was 0.208%, 0.209%, 0.098%, 0.307% and 0.071% for farms D, S, K, H, and Y in Duroc, 0.071%, 0.188%, 0.685%, 0.336%, and 0.449% for farms S, H, C, J, and W in Landrace, and 0.243%, 0.123%, 0.103%, 0.165%, and 0.286% for farms D, S, G, H, and J in Yorkshire, respectively. The average inbreeding rate was highest for Landrace, intermediate for Yorkshire, and lowest for Duroc farms. In Landrace and Yorkshire populations there were few immigrant animals per generation. In Duroc, however, there were quite large numbers of immigrant animals per generation compared to other breeds. The effective population sizes calculated from the average rate of inbreeding were distributed between 73.0 and 708.7. Specific values were 204.8, 239.7, 508.8, 163.0 and 708.2 for farms D, S, K, H, and Y in Duroc, 708.7, 266.5, 73.0, 148.9, and 111.3 for farms S, H, C, J, and W in Landrace, and 205.5, 406.0, 486.9, 302.6 and 175.0 for farms D, S, G, H, and J in Yorkshire, respectively. The values were acceptable for natural selection for fitness and inbreeding depression. The results showed that there was no cause for concern over the current inbreeding level of major swine breeding farm populations and the inbreeding level was within an acceptable range.

A New Color Grafted Cactus (Copiapoa scopa) Cultivar "Red Stone" (접목선인장 코피아포아 신품종 "레드스톤" 육성)

  • Cho, Chang-Hui;Nam, Sang-Yong;Lee, Sang-Deok;Park, Young-Su
    • Korean Journal of Breeding Science
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    • v.40 no.4
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    • pp.525-528
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    • 2008
  • A new graft cactus (Copiapoa scopa) cultivar 'Redstone' was developed at Cactus Research Institute, Gyeonggi-do A.R.E.S, in 2007. GCP563 and GCP618 were crossed in 2004 and we got 9 seedlings from this combination. After pedigree selection in 2005, one cultivar was finally selected through the test of specific character in 2007 and named as "Redstone". "Redstone" cultivar has red brown color and round globose shape with 15 ribs and its spines are black. This cultivar is able to produce 26.8 offshoots per plant. 'Redstone' cultivar has higher productivity and more slow growth than Copiapoa scopa cultivar.

A New Yellow Color Grafted Cactus (Chamaecereus silvestrii) Cultivar "Yellow Tree" (접목선인장 황색계 산취 신품종 "옐로우트리" 육성)

  • Cho, Chang-Hui;Nam, Sang-Yong;Lee, Sang-Deok;Park, Heung-Bae
    • Korean Journal of Breeding Science
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    • v.40 no.4
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    • pp.521-524
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    • 2008
  • A new graft cactus (Chamaecereus silvestrii f. variegata) cultivars "Yellow Ttree" was developed at Cactus Research Institute, Gyeonggi-do A.R.E.S. in 2007. GC013001 and GC0110703 were crossed in 2005 and we got 42 seedlings from this combination. After pedigree selection in 2005, one cultivar were finally selected through the test of specific character in 2007 and named as "Yellow Ttree". "Yellow Ttree" has cylindrical shape of yellow color with 13~14 ribs. Formation of its offshoots is concentrated on the lower part of the plant. This cultivar is able to produce 13.9 offsets shoots per plant and its offshoots are hard.

Population structure analysis of Yeonsan Ogye using microsatellite markers

  • Cho, Sung Hyun;Lee, Seung-Sook;Manjula, Prabuddha;Kim, Minjun;Lee, Seung Hwan;Lee, Jun Heon;Seo, Dongwon
    • Journal of Animal Science and Technology
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    • v.62 no.6
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    • pp.790-800
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    • 2020
  • The Yeonsan Ogye (YO) chicken is a natural heritage of Korea, characterized by black feathers, skin, bones, eyes, and comb. The purebred of YO population has been reared under the natural mating system with no systematic selection and breeding plan. The purpose of this study was to identify the genetic diversity and find the optimal number of population sub-division using 12 polymorphic microsatellite (MS) markers to construct a pedigree-based breeding plan for the YO population. A total of 509 YO birds were used for this study. Genetic diversity and population structure analysis were conducted based on the MS marker genotype information. The overall average polymorphic information content value and expected heterozygosity of the population were 0.586, and 0.642, respectively. The K-mean cluster analysis based on the genetic distance result confirmed that the current YO population can be divided into three ancestry groups. Individuals in each group were evaluated based on their genetic distance to identify the potential candidates for a future breeding plan. This study concludes that a future breeding plan with known pedigree information of selected founder animals, which holds high genetic diversity, could be the best strategy to ensure the conservation of the Korean YO chicken population.

A Biovoltine Silkworm Variety, Huayuan${\times}$Dongshen, That is Resistant to Fluoride Contamination

  • Xu, Anying;Lin, Changqi;Hou, Chengxiang;Zhang, Yuehua;Li, Muwang;Sun, Pingjiang
    • International Journal of Industrial Entomology and Biomaterials
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    • v.13 no.1
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    • pp.1-5
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    • 2006
  • The major dominant fluoride-endurance (Dfe) gene was introduced into the commercial varieties by crossing and pedigree selection to breed silkworm races that could normally develop in the area that polluted by fluoride. After backcrossed for two generations, the Dfe gene was made homozygous, and individuals with good economic characters were selected to generate next generation. After 8 generations of selection, their characters became stable, and the silkworm variety which is resistant to fluoride, Huayuan${\times}$Dongsheng, for spring rearing were bred.

Inbreeding and Genetic Diversity in Three Imported Swine Breeds in China Using Pedigree Data

  • Tang, G.Q.;Xue, J.;Lian, M.J.;Yang, R.F.;Liu, T.F.;Zeng, Z.Y.;Jiang, A.A.;Jiang, Y.Z.;Zhu, L.;Bai, L.;Wang, Z.;Li, X.W.
    • Asian-Australasian Journal of Animal Sciences
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    • v.26 no.6
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    • pp.755-765
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    • 2013
  • The accumulation of inbreeding and the loss of genetic diversity is a potential problem in the modern swine breeds in China. Therefore, the purpose of this study was to analyze the pedigrees of Chinese Duroc (CD), Landrace (CL) and Yorkshire (CY) swine to estimate the past and current rates of inbreeding, and to identify the main causes of genetic diversity loss. Pedigree files from CD, CL and CY containing, 4529, 16,776 and 22,600 records, respectively, were analyzed. Pedigree completeness indexes of the three breeds, accounting for one generation back, were 83.72, 93.93 and 93.59%, respectively. The estimated average annual inbreeding rates for CD, CL and CY in recent three years were 0.21, 0.19 and 0.13%, respectively. The estimated average percentage of genetic diversity loss within each breed in recent three years was about 8.92, 2.19, and 3.36%, respectively. The average relative proportion of genetic diversity loss due to unequal contributions of founders in CD, CL and CY was 69.09, 57.95 and 60.57%, and due to random genetic drift was 30.91, 42.05 and 39.43%, respectively. The estimated current effective population size for CD, CL and CY was 76, 117 and 202, respectively. Therefore, CD has been found to have lost considerable genetic diversity, demanding priority for optimizing the selection and mating to control future coancestry and inbreeding. Unequal contribution of founders was a major cause of genetic diversity loss in Chinese swine breeds and random genetic drift also showed substantial impact on the loss of diversity.

Strategies to Multiply Elite Cow in Hanwoo Small Farm

  • Lee, Seung Hwan;Kim, Ui Hyung;Dang, Chang Gwan;Aditi, Sharma;Kim, Hyeong Cheul;Yeon, Seung Heum;Jeon, Gi Jun;Chang, Sun Sik;Oh, Sung Jong;Lee, Hak Kyo;Yang, Bo Suk;Kang, Hee Seol
    • Journal of Embryo Transfer
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    • v.28 no.2
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    • pp.79-85
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    • 2013
  • The recent development in genetic assisted selection (combining traditional- and genome assisted selection method) and reproduction technologies will allow multiplying elite cow in Hanwoo small farm. This review describes the new context and corresponding needs for genome assisted selection schemes and how reproductive technologies can be incorporated to get more genetic gain for cow genetic improvement in Hanwoo. New improved massive phenotypes and pedigree information are being generated from commercial farm sector and these are allowing to do genetic evaluation using BLUP to get elite cows in Korea. Moreover cattle genome information can now be incorporated into breeding program. In this context, this review will discuss about combining the reproductive techniques (Multiple Ovulation Embryo Transfer; MOET) and genome assisted selection method to get more genetic gain in Hanwoo breeding program. Finally, how these technologies can be used for multiplication of elite cow in small farm was discussed.