• 한국자원식물학회지
• /
• 제23권3호
• /
• pp.233-241
• /
• 2010

In vitro elimination of Sweet potato leaf curl virus (SPLCV) from infected sweet potato is difficult due to low number of virus-free plants obtained from meristem tip culture and long growth period required for the virus detection. In this study, efficient production of the SPLCV-free sweet potato by in vitro therapy coupled with a PCR assay for virus detection was investigated. Infected shoots cultured on Murashige and Skoog medium were treated at three different temperatures for 7 weeks followed by meristem tip culture on the medium with or without ribavirin at 50 mg/L. The regenerated plantlets were tested for virus infection by a PCR assay. The results showed that the both heat- and cold-treatments, and addition of the ribavirin did not have significant effect on efficiency of the virus elimination. The meristem size, however, greatly affected the survival rate. Meristems sized over 0.4 mm survived better than smaller ones (0.2-0.3 mm). The PCR assay was approved to be a rapid, sensitive and reliable for the SPLCV detection in regenerated plantlets. Therefore, combination of cultivating meristem tips sized 0.4-0.5 mm on the medium at $22^{\circ}C$ without ribavirin and detection of SPLCV in the regenerated plantlets by the PCR assay was an efficient system for the SPLCV elimination from infected sweet potato.

• Journal of Microbiology and Biotechnology
• /
• 제31권2호
• /
• pp.280-289
• /
• 2021

Genetic markers currently used for the discrimination of Lactobacillus delbrueckii subspecies have low efficiency for identification at subspecies level. Therefore, our objective in this study was to select novel genetic markers for accurate identification and discrimination of six L. delbrueckii subspecies based on pangenome analysis. We evaluated L. delbrueckii genomes to avoid making incorrect conclusions in the process of selecting genetic markers due to mislabeled genomes. Genome analysis showed that two genomes of L. delbrueckii subspecies deposited at NCBI were misidentified. Based on these results, subspecies-specific genetic markers were selected by comparing the core and pangenomes. Genetic markers were confirmed to be specific for 59,196,562 genome sequences via in silico analysis. They were found in all strains of the same subspecies, but not in other subspecies or bacterial strains. These genetic markers also could be used to accurately identify genomes at the subspecies level for genomes known at the species level. A real-time PCR method for detecting three main subspecies (L. delbrueckii subsp. delbrueckii, lactis, and bulgaricus) was developed to cost-effectively identify them using genetic markers. Results showed 100% specificity for each subspecies. These genetic markers could differentiate each subspecies from 44 other lactic acid bacteria. This real-time PCR method was then applied to monitor 26 probiotics and dairy products. It was also used to identify 64 unknown strains isolated from raw milk samples and dairy products. Results confirmed that unknown isolates and subspecies contained in the product could be accurately identified using this real-time PCR method.

• 대한환경공학회지
• /
• 제37권6호
• /
• pp.332-339
• /
• 2015

질소화합물은 부영양화 등 수질을 악화시키는 결과를 초래하므로 질소 제거는 수처리에 있어 가장 중요한 문제들 중 하나이다. 본 연구에서는 독립영양탈질 공정인 CANON (Completely Autotrophic Nitrogen-removal Over Nitrite)을 이용하여 암모니아성 질소 제거 효율을 평가하고, 미생물 군집 분석을 수행하였다. AOB (Ammonium Oxidizing Bacteria)와 ANAMMOX(ANaerobic AMMonium OXidation)균을 동시에 식종하고, $37^{\circ}C$에서 유입 암모니아성 질소농도 100 mg-N/L와 아질산성 질소 농도 100 mg-N/L 조건으로 운전한 결과, 성공적인 CANON 반응이 유도되었다. 유입수에서 아질산성 질소를 제외시키고 암모니아성 질소(100 mg-N/L)만을 공급하였을 때, DO농도 0.4 mg/L 이상에서는 CANON의 성능이 악화되었지만, DO농도를 0.3 mg/L으로 낮추자 71.3%의 총 질소제거효율을 나타내었다. 유입 암모니아성 질소 농도를 50 mg-N/L로 낮추었을 때, 질소 제거효율이 급격히 악화되었다. 그러나 유입농도를 다시 100 mg-N/L로 증가시키자 14일 만에 이전의 질소제거성능을 회복하였고, 이후 $76.1{\pm}4.9%$의 총 질소제거효율을 나타냈다. 온도를 상온($20{\pm}1^{\circ}C$) 조건으로 전환하자 초기에는 불안정한 CANON 반응이 일어났지만, 23일 이후에는 안정적인 총 질소제거효율($70.0{\pm}2.6$%)을 유지하였다. PCR-DGGE를 이용한 미생물군집 분석 결과, 식종원과 CANON의 미생물군집은 확연한 차이를 나타냈지만, CANON의 각 조건에 따른 미생물군집은 크게 다르지 않았다. 따라서 질소제거 성능의 악화는 미생물군집을 구성하는 미생물종의 변화에 기인하기 보다는 구성 미생물종들의 질소제거 활성의 저하에 기인하는 것으로 생각된다. 이러한 결과는 AOB와 ANAMMOX균을 식종하여 CANON 반응을 성공적으로 유도한다면, 이후 농도나 온도의 변화에도 안정적인 미생물군집을 유지할 수 있다는 것을 의미한다.

• 생명과학회지
• /
• 제26권12호
• /
• pp.1355-1359
• /
• 2016

인간 중간엽 줄기세포(hMSCs)는 신경세포(neuron-like cells)를 포함한 다양한 세포로 분화할 수 있는 능력을 지닌 성체 줄기세포(adult stem cells)이다. 본 연구에서는 인간의 골수유래-중간엽 줄기세포(bone marrow-mesenchymal stem cells; hBM-MSCs)를 이용한 신경분화에서 신경세포 표지자(neuronal marker)인 NF-M, Tuj-1 뿐만 아니라 성상세포 표지자(glial marker)인 GFAP의 발현 역시 의미 있게 증가함을 real-time PCR, Western blot, and immunocytochemical staining법을 통하여 관찰하였다. 이를 개선하기 위하여, 신경분화에 중요한 신호전달자(signal intermediator)인 PDE4를 억제한 후 신경분화를 유도하였다. PDE4 억제자인 rolipram 혹은 resveratrol를 각각 처리하여 신경분화한 줄기세포(Roli- or RSV-dMSCs)에서 NF-M, Tuj-1의 발현이 증가하였고 반면, GFAP의 발현은 감소함을 real-time PCR, Western blot, and immunocytochemical staining법을 통하여 관찰하였다. 본 연구를 통하여, PDE4를 조절하며 줄기세포의 신경분화를 개선할 수 있음을 보였다.

• Journal of Plant Biotechnology
• /
• 제50권
• /
• pp.56-62
• /
• 2023

35S cauliflower mosaic virus 프로모터의 조절을 받고 인트론이 포함된 β-Glucuronidase (gus) gene과 35S cauliflower mosaic virus (enhanced) 프로모터의 조절을 받는 blpR유전자가 있는 pCAMBIA3301 벡터가 포함된 AGL-1 균주를 사용하였다. 아그로박테리움을 이용한 형질전환 체계와 PPT (D-L-phosphinothricin) 선발을 통하여 나리 인편조직으로부터 형질전환 식물체가 획득되었다. 본 연구에서 나리 레드플레임'품종의 인편조직에 선발 및 목적유전자로 바스타 제초제저항성 유전자인 blpR 유전자를 도입하였다. 상기 실험 결과, 20분의 접종시간과 5일간의 아그로박테리움과의 공동배양이 100개의 접종된 인편개체에서 각각 24, 27개의 높은 PPT 저항성 개체가 관찰되었고 신초까지 형성된 인편을 19.6 및 22.7개를 생산하는 우수한 형질전환 결과를 보여주었다. 이렇게 제초제를 이용하여 선발되었을 뿐만 아니라 도입된 reporter 유전자인 gus도 발현되었음을 확인하였고 선발유전자이자 목적유전자인 blpR 유전자도 PCR 검정을 통해 도입되었음을 확인하였다. 12주 이상의 선발과정을 거치고 gus 및 PCR 검정을 거친 형질전환 개체들은 발근 배지를 거쳐 순화 후 화분으로 이식하여 높은 활착율을 보여주었다. 결론적으로 본 연구에서 확립한 프로토콜을 이용하면 평균 20% 이상의 형질전환 효율을 나타내고 본 연구에 기술된 아그로박테리움 매개 형질전환 체계에 향후 보완이 필요하지만, 우수 품종개발을 위한 나리 육종 프로그램에 기여할 수 있을 것으로 판단된다.

• Asian-Australasian Journal of Animal Sciences
• /
• 제13권10호
• /
• pp.1367-1372
• /
• 2000

The present study was conducted to evaluate the efficiency of transgenic rabbit production by DNA microinjection using EGFP (Enhanced Green Fluorescent Protein) gene. In this experiment EGFP coding sequences fused to CMV promoter were microinjected into rabbit one-cell embryos, and then GFP expression and gene integration were evaluated in preimplantation embryos and fetuses recovered on day 15 of pregnancy to determine efficiency of transgenic rabbit production. Effect of DNA concentration was also tested on development in vitro following microinjection and transgene integration in fetuses. Development of embryos in vitro was decreased by DNA microinjection, but the rates of pregnancy and implantation were not significantly affected by microinjection. As development progressed in vitro percentage of GFP expression in rabbit embryos was decreased, resulting GFP expression detected in 37.5% of blastocysts. The efficiencies for production of transgenic fetuses were 4.0% and 7.6%, respectively, when $10ng/{\mu}l$ and $20ng/{\mu}l$ of DNA concentration were microinjected. Transgenic fetuses were confirmed by GFP expression and PCR analysis of fetus genomic DNA. These results indicated that DNA microinjection itself damaged embryo development and DNA concentration affected the efficiency of transgenic rabbit production.

• Journal of Microbiology and Biotechnology
• /
• 제16권10호
• /
• pp.1561-1569
• /
• 2006

Denaturing gradient gel electrophoresis (DGGE) is one of the most frequently used methods for analysis of soil microbial community structure. Unbiased PCR amplification of target DNA templates is crucial for efficient detection of multiple microbial populations mixed in soil. In this study, DGGE profiles were compared using different pairs of primers targeting different hypervariable regions of thirteen representative soil bacteria and clones. The primer set (1070f-1392r) for the E. coli numbering 1,071-1,391 region could not resolve all the 16S rDNA fragments of the representative bacteria and clones, and moreover, yielded spurious bands in DGGE profiles. For the E. coli numbering 353-514 region, various forward primers were designed to investigate the efficiency of PCR amplification. A degenerate forward primer (F357IW) often yielded multiple bands for a certain single 16S rDNA fragment in DGGE analysis, whereas nondegenerate primers (338f, F338T2, F338I2) differentially amplified each of the fragments in the mixture according to the position and the number of primer-template mismatches. A forward primer (F352T) designed to have one internal mismatch commonly with all the thirteen 16S rDNA fragments efficiently produced and separated all the target DNA bands with similar intensities in the DGGE profiles. This primer set F352T-519r consistently yielded the best DGGE banding profiles when tested with various soil samples. Touchdown PCR intensified the uneven amplification, and lowering the annealing temperature had no significant effect on the DGGE profiles. These results showed that PCR amplification bias could be much improved by properly designing primers for use in fingerprinting soil bacterial communities with the DGGE technique.

• 한국초지조사료학회지
• /
• 제20권2호
• /
• pp.103-108
• /
• 2000

To produce of transgenic orchardgrass, the seed-derived calli of orchardgrass (Dactylis glomerata L.) co-cultivated with Agrobacterium turnefaciens EHAlOl harboring binary vector pIG121-Hm were selected with hygromycin and then transferred onto N6 regeneration medium containing 1 rngl l of NAA, 5 rngl l of kinetin, 250 rngl l of carbenicillin and 50 mg/ l of hygromycin. The efficiency of transformation was differed on cultivars, that is, 'Potomac' appeared 12% of transformation efficiency while 'Amba' did 5.5%. The addition of acetosyringone during co-cultivation was a key to successhl transformation of orchardgrass. Transgene fragments were identified by PCR analysis and the constitutive expression of GUS gene was confirmed by Northern blot analysis. (Key words : Acetosyringone, Agrobacterium tumefaciens, Orchardgrass (Dactylis glomerata L.), Transformation)

• Journal of Microbiology and Biotechnology
• /
• 제10권1호
• /
• pp.91-94
• /
• 2000

The suspension cells of Taxus cuspidata were transformed with Agrobacterium tumefaciens harboring binary vector pCAMBIE1302 encoding mgfp. Transient transfection efficiency was compared by using the fluoremetric measurement. The transient transfection efficiency was improved by transformation with DMSO and/or sonication treatment. Optimum conditions for DMSO and sonication treatment were 3% and 30sec, respectively. selection and maintenance of transformed cells were continued for 3 months. An insertion of the mgfp gene in transformed cells was detected by PCR and an expression of GFP confirmed by the western blot analysis.

• 대한약학회:학술대회논문집
• /
• 대한약학회 2002년도 Proceedings of the Convention of the Pharmaceutical Society of Korea Vol.2
• /
• pp.426.3-427
• /
• 2002

The aim of this study was to enhance the transfection efficiency of emulsion-mediated gene expression by using chitosan, Conventional DNA/emulsion complexes and precondensed DNA/emulsion complexes were prepared by adding either naked or precondensed plasmids to cationic emulsion. The zeta potential. TEM, and size of transfection complexes were measured. In vitro transfection efficiency for boty complexes was also studied by several methods: flow cytometer, expression analysis by confocal microscope, RT-PCR, and in addition. (omitted)