• Bioinformatics and Biosystems
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• v.1 no.2
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• pp.99-102
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• 2006

The Basic Local Alignment Search Tool (BLAST) is one of the most established software in bioinformatics research and it compares a query sequence against the libraries of known sequences in order to investigate sequence similarity. Expressed Sequence Tags (ESTs) are single-pass sequence reads from mRNA (or cDNA) and represent the expression for a given cDNA library and the snapshot of genes expressed in a given tissue and/or at a given developmental stage. Therefore, ESTs can be very valuable information for functional genomics and bioinformatics researches. Although major bio database (DB) websites including NCBI are providing BLAST services and EST data, local DB and search system is demanding for better performance and security issue. Here we present animal EST DBs and local BLAST search system. The animal ESTs DB in NCBI Genbank were divided by animal species using the Perl script we developed. and we also built the new extended DB search systems fur the new data (Local Animal BLAST Search System: http://bioinfo.kohost.net), which was constructed on the high-capacity PC Cluster system fur the best performance. The new local DB contains 650,046 sequences for Bos taurus(cattle), 368,120 sequences for Sus scrofa (pig), 693,005 sequences for Gallus gallus (fowl), respectively.

• Atmosphere
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• v.15 no.1
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• pp.35-46
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• 2005

Today, the outreach of National Meteorological Service such as PC cluster based Numerical Weather Prediction (NWP) technique is vigorous in the world wide. In this regard, WMO (World Meteorological Organization) asked KMA (Korea Meteorological Administration) to formulate a regional project, which cover most of RA II members, using similar technical system with KMA's. In that sense, Meteorological Research Institute (METRI) in KMA developed Mongolian NWP System (MNWPS) based on PC cluster and transferred the technology to Weather Service Center in Mongolia. The hybrid parallel algorithm and channel bonding technique were adopted to cut cost and showed 41% faster performance than single MPI (Message Passing Interface) approach. The cluster technique of Beowulf type was also adopted for convenient management and saving resources. The Linux based free operating system provide very cost effective solution for operating multi-nodes. Additionally, the GNU software provide many tools, utilities and applications for construction and management of a cluster. A flash flood event happened in Mongolia (2 September 2003) was selected for test run, and MNWPS successfully simulated the event with initial and boundary condition from Global Data Assimilation and Prediction System (GDAPS) of KMA. Now, the cluster based NWP System in Mongolia has been operated for local prediction around the region and provided various auxiliary charts.

• Journal of the Korean Society for Aeronautical & Space Sciences
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• v.30 no.8
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• pp.46-55
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• 2002

A nonlinear aeroelastic analysis system in transonic and supersonic flows has been developed using high speed parallel processing technique on the network based PC-clustered machines. This paper includes the coupling of advanced numerical techniques such as computational structural dynamics (CSD), finite element method (FEM) and computational fluid dynamics (CFD). The unsteady Euler solver on dynamic unstructured meshes is employed and coupled with computational aeroelastic solvers. Thus it can give very accurate engineering data in the structural and aeroelastic design of flight vehicles. To show the great potential of useful application, transonic and supersonic flutter analyses have been conducted for a complete aircraft model under developing in Korea.

• Progress in Medical Physics
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• v.19 no.1
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• pp.21-34
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• 2008

The parallel Monte Carlo electron and photon transport (PMCEPT) code [Kum and Lee, J. Korean Phys. Soc. 47, 716 (2006)] for calculating electron and photon beam doses has been developed based on the three dimensional geometry defined by computed tomography (CT) images and implemented on the Beowulf PC cluster. Understanding the limitations of Monte Carlo codes is useful in order to avoid systematic errors in simulations and to suggest further improvement of the codes. We evaluated the PMCEPT code by comparing its normalized depth doses for electron and photon beams with those of MCNP5, EGS4, DPM, and GEANT4 codes, and with measurements. The PMCEPT results agreed well with others in homogeneous and heterogeneous media within an error of $1{\sim}3%$ of the dose maximum. The computing time benchmark has also been performed for two cases, showing that the PMCEPT code was approximately twenty times faster than the MCNP5 for 20-MeV electron beams irradiated on the water phantom. For the 18-MV photon beams irradiated on the water phantom, the PMCEPT was three times faster than the GEANT4. Thus, the results suggest that the PMCEPT code is indeed appropriate for both fast and accurate simulations.

• Journal of the Computational Structural Engineering Institute of Korea
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• v.24 no.6
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• pp.715-722
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• 2011

In this paper, the behavior of nuclear-power plant subjected to an aircraft impact is performed using the parallel analysis. In the erstwhile study of an aircraft impact to the nuclear-power plant, it has been used that the impact load is applied at the local area by using the impact load-time history function of Riera, and the target structures have been restricted to the simple RC(Reinforced Concrete) walls or RC buildings. However, in this paper, the analysis of an aircraft impact is performed by using a real aircraft model similar to the Boeing 767 and a fictitious nuclear-power plant similar to the real structure, and an aircraft model is verified by comparing the generated history of the aircraft crash against the rigid target with another history by using the Riera's function which is allowable in the impact evaluation guide, NEI07-13(2009). Also, in general, it is required too much time for the hypervelocity impact analysis due to the contact problems between two or more adjacent physical bodies and the high nonlinearity causing dynamic large deformation, so there is a limitation with a single CPU alone to deal with these problems effectively. Therefore, in this paper, Message-Passing MIMD type of parallel analysis is performed by using self-constructed Linux-Cluster system to improve the computational efficiency, and in order to evaluate the parallel performance, the four cases of analysis, i.e. plain concrete, reinforced concrete, reinforced concrete with bonded containment liner plate, steel-plate concrete structure, are performed and discussed.

• Journal of KIISE:Computing Practices and Letters
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• v.11 no.5
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• pp.401-415
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• 2005

Owing to the improved wireless communication technologies, it is possible to provide streaming service of multimedia with PDAs and mobile phones in addition to desktop PCs. Since mobile client devices have low computing power and low network bandwidth due to wireless network, the transcoding technology to adapt media for mobile client devices considering their characteristics is necessary. Transcoding servers transcode the source media to the target media within corresponding grades and provide QoS in real-time. In particular, an effective load balancing policy for transcoding servers is inevitable to support QoS for large scale mobile users. In this paper, the resource weighted load distribution policy is proposed for a fair load balance and a more scalable performance in cluster-based transcoding servers. Our proposed policy is based on the resource weighted table and number of maximum supported users, which are pre-computed for each pre-defined grade. We implement the proposed policy on cluster-based transcoding servers and evaluate its fair load distribution and scalable performance with the number of transcoding servers.

• Journal of the Korea Computer Graphics Society
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• v.24 no.3
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• pp.21-31
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• 2018

We introduces a system that enables fast and effective visualization of natural disaster data such as typhoons, tsunamis, floods, and flooding to help make informed decisions in disaster situations. Data containing disaster information consists of a few hundred megabytes to many tens and hundreds of gigabytes, which can not be handled by a PC. This system was implemented in the form of a client-server based service to generate and output results from high-performance servers. The server in a built-in, high-performance cluster handles client requests and sends the result of visualization to the client. Clients can receive the results in any form of images, videos, or 3D graphic model by specifying a desired time frame, effectively viewing the results with a user-friendly GUI.

• Journal of KIISE:Computer Systems and Theory
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• v.36 no.5
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• pp.351-359
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• 2009

Recently with increase of data in the Internet, platform technologies that can process huge data effectively such as Google platform and Hadoop are regarded as worthy of notice. In this kind of platform, there exist network I/O overheads to send task outputs due to the MapReduce operation which is a programming model to support parallel computation in the large cluster system. In this paper, we suggest applying of TIPC (Transparent Inter-Process Communication) protocol for reducing network I/O overheads and increasing network performance in the distributed computing environments. TIPC has a lightweight protocol stack and it spends relatively less CPU time than TCP because of its simple connection establishment and logical addressing. In this paper, we analyze main features of the Hadoop-based distributed computing system, and we build an experimental model which can be used for experiments to compare the performance of various protocols. In the experimental result, TIPC has a higher bandwidth and lower CPU overheads than other protocols.

• Progress in Medical Physics
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• v.14 no.4
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• pp.211-217
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• 2003

The Principal component analysis (PCA) is a well-known data analysis method that is useful in linear feature extraction and data compression. The PCA is a linear transformation that applies an orthogonal rotation to the original data, so as to maximize the retained variance. PCA is a classical technique for obtaining an optimal overall mapping of linearly dependent patterns of correlation between variables (e.g. neurons). PCA provides, in the mean-squared error sense, an optimal linear mapping of the signals which are spread across a group of variables. These signals are concentrated into the first few components, while the noise, i.e. variance which is uncorrelated across variables, is sequestered in the remaining components. PCA has been used extensively to resolve temporal patterns in neurophysiological recordings. Because the retinal signal is stochastic process, PCA can be used to identify the retinal spikes. With excised rabbit eye, retina was isolated. A piece of retina was attached with the ganglion cell side to the surface of the microelectrode array (MEA). The MEA consisted of glass plate with 60 substrate integrated and insulated golden connection lanes terminating in an 8${\times}$8 array (spacing 200 $\mu$m, electrode diameter 30 $\mu$m) in the center of the plate. The MEA 60 system was used for the recording of retinal ganglion cell activity. The action potentials of each channel were sorted by off­line analysis tool. Spikes were detected with a threshold criterion and sorted according to their principal component composition. The first (PC1) and second principal component values (PC2) were calculated using all the waveforms of the each channel and all n time points in the waveform, where several clusters could be separated clearly in two dimension. We verified that PCA-based waveform detection was effective as an initial approach for spike sorting method.

• Proceedings of the Korea Information Processing Society Conference
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• 2002.11c
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• pp.2383-2386
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• 2002

많은 ISP업체와 서버 관리자들은 자신의 시스템 향상을 위하여 많을 비용을 쏟아 붇고 있지만 그 결과는 비관적이다. 지금까지는 하드웨어적인 성능만을 고려하였으나, 최근에는 리눅스를 탑재하여 낮은 가격과 높은 가용성을 가지면서, 증가하는 네트워크 요청에 효과적으로 대응하기 위한 해결책으로 여러 대의 호스트로 구성되는 클러스터링 기술이 각광을 받고 있다. 또한 클러스터는 저렴한 호스트들로 구성되므로 구축 비용이 절감되는것 뿐만 아니라, 일부 호스트가 고장 나더라도 다른 호스트는 네트워크 작업 분담을 재설정하여 정상적으로 동작함으로 가용성이 항상 유지될 수 있다는 것을 보여준다. 최근 군에서도 정보화 과학화의 열풍에 힘입어 그 어느때보다도 업무의 전산화, 정보화에 박차를 가하고 있는 실정이다. 이로 인한 군업무에 적용되는 중대형 서버의 증가와 1인 1PC정책에 의한 클라이언트의 증가, 네트웍 인프라 구축에 심혈을 기울이고 있다. 그러나 사용자의 요구만큼 군환 경하에서의 정보화 업무를 감당하는 서버의 역량은 제한이 있다. 군업무의 특수성에 비추어 볼때에도 사회의 금융업무와 마찬가지로 중단없는 서비스의 수행과 서버의 안정화는 군전산의 가장 중요한 요소중의 하나임에 불구하고 아직까지도 현실성은 많이 미비한 상태이다. 본 연구는 이와 같은 문제를 해결하기 위하여 NAS와 SAN개념(네트웍기반)을 도입하여 군 서버 구축 새로운 패러다임을 제공하여 업무의 통폐합과 함께 서버의 통폐합의 전초단계인 무정지 클러스터링 서버의 구축방안을 제시하여 군정보화, 과학화의 초석을 다지는 계기로 삼고자 한다.위상변화에 대한 적응성을 높일 수 있도록 한다. SQL Server 2000 그리고 LSF를 이용하였다. 그리고 구현 환경과 구성요소에 대한 수행 화면을 보였다.ool)을 사용하더라도 단순 다중 쓰레드 모델보다 더 많은 수의 클라이언트를 수용할 수 있는 장점이 있다. 이러한 결과를 바탕으로 본 연구팀에서 수행중인 MoIM-Messge서버의 네트워크 모듈로 다중 쓰레드 소켓폴링 모델을 적용하였다.n rate compared with conventional face recognition algorithms. 아니라 실내에서도 발생하고 있었다. 정량한 8개 화합물 각각과 총 휘발성 유기화합물의 스피어만 상관계수는 벤젠을 제외하고는 모두 유의하였다. 이중 톨루엔과 크실렌은 총 휘발성 유기화합물과 좋은 상관성 (톨루엔 0.76, 크실렌, 0.87)을 나타내었다. 이 연구는 톨루엔과 크실렌이 총 휘발성 유기화합물의 좋은 지표를 사용될 있고, 톨루엔, 에틸벤젠, 크실렌 등 많은 휘발성 유기화합물의 발생원은 실외뿐 아니라 실내에도 있음을 나타내고 있다.>10)의 $[^{18}F]F_2$를 얻었다. 결론: $^{18}O(p,n)^{18}F$ 핵반응을 이용하여 친전자성 방사성동위원소 $[^{18}F]F_2$를 생산하였다. 표적 챔버는 알루미늄으로 제작하였으며 본 연구에서 연구된 $[^{18}F]F_2$가스는 친핵성 치환반응으로 방사성동위원소를 도입하기 어려운 다양한 방사성의 약품개발에 유용하게 이용될 수 있을 것이다.었으나 움직임