• 한국균학회소식:학술대회논문집
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• 한국균학회 2015년도 춘계학술대회 및 임시총회
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• pp.41-41
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• 2015

BSA-seq technologies, combined Bulked Segregant Analysis (BSA) and Next-Generation Sequencing (NGS), are making it faster and more efficient to establish the association of agronomic traits with molecular markers or candidate genes, which is the requirement for marker-assisted selection in molecular breeding. Clubroot disease, caused by Plasmodiophora brassicae, is a serious threat to Brassica crops. Even we have breed new clubroot resistant varieties of Chinese cabbage (B. rapa ssp. pekinesis), the underlying genetic mechanism is unclear. In this study, an $F_2$ population of 340 plants were inoculated with P. brassicae from Xinye (Pathotype 2 on the differentials of Williams). Resistance phenotype segregation ratio for the populations fit a 3:1 (R:S) segregation model, consistent with a single dominant gene model. Super-BSA, using re-sequencing the parents, extremely R and S DNA pools with each 50 plants, revealed 3 potential candidate regions on the chromosome A03, with the most significant region falling between 24.30 Mb and 24.75 Mb. A linkage map with 31 markers in this region was constructed with several closely linked markers identified. A Major QTL for clubroot resistance, CRq, which was identified with the peak LOD score at 169.3, explaining 89.9% of the phenotypic variation. And we developed a new co-segregated InDel marker BrQ-2. Joint BSA-seq and traditional QTL analysis delimited CRq to an 250 kb genomic region, where four TIR-NBS-LRR genes (Bra019409, Bra019410, Bra019412 and Bra019413) clustered. The CR gene CRq and closely linked markers will be highly useful for breeding new resistant Chinese cabbage cultivars.

• 한국산림과학회지
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• 제90권4호
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• pp.476-487
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• 2001

본 연구는 내음수(耐陰樹)가 임상(林床)의 낮은 광도조건에 적응하는 기작을 구명하기 위해서, 양수(陽樹)와 내음수(耐陰樹)의 생육 광도 저하에 대한 광합성계(光合成系)의 적응반응을 서로 비교하였다. 이태리포플러, 음나무, 졸참나무 1년생 묘목을 대상으로 PPFD $920{\mu}mol\;m^{-2}s^{-1}$과 PPFD $80{\mu}mol\;m^{-2}s^{-1}$의 광도조건에서 5개월간 생장한 개체의 엽록소함량, 잎의 분광특성, 광합성특성 등을 조사하였다. 그 결과 양수인 이태리포플러는 생육 광도의 저하로 엽면적, 단위 엽면적 당의 엽록소함량, 빛의 흡수율 및 광합성에 대한 이용효율 등이 감소하고, 광합성의 광화학계 및 탄소고정계의 활성 저하로 낮은 광합성능력을 나타냈다. 그러나 내음성이 이태리포플러보다 강한 음나무와 졸참나무는 엽면적, 엽록소함량, 순양자수율을 증가시켜 빛의 흡수량과 광합성에 대한 이용효율을 높이는 적응반응을 나타냈다. 그리고 이들 수종은 낮은 광도에서도 광합성의 광화학계 및 탄소고정계의 활성이 정상적으로 유지되고 있음을 알 수 있었다.

• Asian-Australasian Journal of Animal Sciences
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• 제21권8호
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• pp.1127-1133
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• 2008

This study was designed to develop a method of liquid storage of boar sperm at $4^{\circ}C$ by using the modified Beltsville F5 (BF5) diluent with bovine serum albumin (BSA) and N-acetyl-D-glucosamine. Boar sperm were stored in lactose-egg yolk and N-acetyl-D-glucosamine (LEN), BF5 and Golden-Pig liquid 4 (GPL4) diluents at $4^{\circ}C$ for 5 days and were examined for sperm viability, adenosine triphosphate (ATP) and in vitro fertilization (IVF). The percentage of sperm viability in GPL4 diluent was higher than in LEN and BF5 diluent from 1 to 5 days of storage at $4^{\circ}C$. The percentage of sperm viability steadily declined from 1 to 5 days of storage in the three different diluents. Sperm ATP in GPL4 diluent was higher than in LEN and BF5 diluents from 1 to 5 days of storage. Sperm ATP rapidly declined after 5 days of storage in the three different diluents. Porcine oocytes matured in vitro were inseminated with different sperm concentrations of liquid semen stored for 3 days in GPL4 diluent. The percentage of monospermic oocytes did not show any differences from 2.5 to $20{\times}10^5$ sperm/ml. However, the percentage of polyspermic oocytes in the sperm concentration of $2.5{\times}10^5$ sperm/ml was lower than in concentrations of 5, 10 and $20{\times}10^5$5 sperm/ml. The percentage of blastocysts from the cleaved oocytes at $2.5{\times}10^5/ml$ sperm concentration was significantly lower than at 5, 10 and $20{\times}10^5sperm/ml$ concentrations. In conclusion, GPL4 diluent can be stored at $4^{\circ}C$ for 5 days and showed higher sperm viability and sperm ATP concentration compared with LEN and BF5 diluents. Also, we found that GPL4 diluent can be used for IVF of porcine oocytes.

• Asian-Australasian Journal of Animal Sciences
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• 제21권7호
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• pp.917-922
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• 2008

A disintegrin-like and metalloprotease (reprolysin type) with thrombospondin type 1 motif (ADAMTS1) plays a critical role in follicular rupture and represents a major advance in the proteolytic events that control ovulation. In this study, a 9,026-bp DNA sequence containing the full coding region, all 8 introns and part of the 5'and 3' untranslated region of the porcine ADAMTS1 gene was obtained. Analysis of the ADAMTS1 gene using the porcine radiation hybrid panel indicated that pig ADAMTS1 is closely linkage with microsatellite marker S0215, located on SSC13q49. The open reading frame of its cDNA covered 2,844 bp and encoded 947 amino acids. The coding region of porcine ADAMTS1 as determined by sequence alignments shared 85% and 81% identity with human and mouse cDNAs, respectively. The deduced protein contained 947 amino acids showing 85% sequence similarity both to the human and mouse proteins, respectively. Comparative sequencing of three pig breeds revealed one single nucleotide polymorphism (SNP) within exon 7 of which a G-C substitution at position 6006 changes a codon for arginine into a codon for proline. The substitution was situated within a PvuII recognition site and developed as a PCR-RFLP marker for further use in population variation investigations and association analysis with litter size. Allele frequencies of this SNP were investigated in seven pig breeds/lines. An association analysis in a new Qingping female line suggested that different ADAMTS1 genotypes have significant differences in litter size (p<0.01).

• Asian-Australasian Journal of Animal Sciences
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• 제29권3호
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• pp.343-351
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• 2016

Although the chemical, physical, and nutritional properties of bovine milk have been extensively studied, only a few studies have attempted to characterize milk-synthesizing genes using RNA-seq data. RNA-seq data was collected from 21 Holstein samples, along with group information about milk production ability; milk yield; and protein, fat, and solid contents. Meta-analysis was employed in order to generally characterize genes related to milk production. In addition, we attempted to investigate the relationship between milk related traits, parity, and lactation period. We observed that milk fat is highly correlated with lactation period; this result indicates that this effect should be considered in the model in order to accurately detect milk production related genes. By employing our developed model, 271 genes were significantly (false discovery rate [FDR] adjusted p-value<0.1) detected as milk production related differentially expressed genes. Of these genes, five (albumin, nitric oxide synthase 3, RNA-binding region (RNP1, RRM) containing 3, secreted and transmembrane 1, and serine palmitoyltransferase, small subunit B) were technically validated using quantitative real-time polymerase chain reaction (qRT-PCR) in order to check the accuracy of RNA-seq analysis. Finally, 83 gene ontology biological processes including several blood vessel and mammary gland development related terms, were significantly detected using DAVID gene-set enrichment analysis. From these results, we observed that detected milk production related genes are highly enriched in the circulation system process and mammary gland related biological functions. In addition, we observed that detected genes including caveolin 1, mammary serum amyloid A3.2, lingual antimicrobial peptide, cathelicidin 4 (CATHL4), cathelicidin 6 (CATHL6) have been reported in other species as milk production related gene. For this reason, we concluded that our detected 271 genes would be strong candidates for determining milk production.

• 한국작물학회지
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• 제24권3호
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• pp.35-42
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• 1979

조광을 답리작에 공시하여 휴립로타리 파종기계(동력경운기부착용)에 의한 파종작업의 성력화 정도와 이에 따른 적정파종량 및 시비량을 구명하였던 바 그 결과를 요약하면 다음과 같다. 1. 토양습윤정도에 따른 휴립로타리 파종기계 재배시험 가) 휴립로타리 파종기계를 이용할 경우 10a당 파종작업에 소요되는 노동시간은 건답상태에서는 72분(1977) 및 73분(1978) 소요되어 66% 및 77%의 성력효과가 있었다. 나) 반습답상태에서는 100분으로 비하여 83%의 절감효과를 보여 건답상태보다 성력효율이 높았다. 2. 휴립로타리 파종기계 재배시의 시비량대 파종량시험 가) 10a당 3요소를 12~8~8kg 시용한 구보다 증비구에서 월동율이 다소 양호하였으나 파종량 간에는 $30\ell$ /10a 구서 약간 불량한 것을 제외하면 일정한 경향이 없었다. 나) 도복 및 수병발생은 시비량이 많을수록 많았으며, 같은 시비량 조건에서는 파종량이 과다한 구에서 도복이 많은 경향을 보였다. 다) 유효경비율은 시비량 간에는 62~66%로 거의 차이가 없었으나 파종량 간에는 10a당 $10\ell$에서 $30\ell$로 증가됨에 따라 80%에서 53%까지 거의 직선적으로 감소되었다. 라) 풀수기의 엽면적지수는 표준비 6.7에 비하여 1.5배비 및 2배비는 9.3~9.4로 많았으며 파종량이 많을수록 커지는 경향을 보였다. 마) $\textrm{m}^2$당 수수는 시비량 및 파종량이 많을수록 뚜렷이 증가되었으나 1수립수는 파종량이 많은 구에서 다소 감소하였다. 1수립수는 파종량이 많은 구에서 다소 감소하였다. 천립중은 이와 반대로 2배비 < 1.5배비=표준비, 10=15=20 < 25=30$\ell$의 경향을 나타내었다. 바) 답리작에서 휴립로타리 파종기를 이용할 경우, 일정 면적당 수수를 확보하기 위한 과정파종량은 표준비시는 10a당, 20l내외, 1.5배비 및 2배비시는 $15\ell$내외이며, 시비량은 증수 및 안전재배면을 고려하여 18~12~12kg로 시용하는 것이 적당할 것으로 사료된다.

• The Korean Journal of Physiology and Pharmacology
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• 제1권6호
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• pp.625-637
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• 1997

Calcium ions are implicated in a variety of physiological functions, including enzyme activity, membrane excitability, neurotransmitter release, and synaptic transmission, etc. Calcium antagonists have been known to be effective for the treatment of exertional angina and essential hypertension. Selective and nonselective voltage-dependent calcium channel blockers also have inhibitory action on the acute and tonic pain behaviors resulting from thermal stimulation, subcutaneous formalin injection and nerve injury. This study was undertaken to investigate the effects of iontophoretically applied $Ca^{++}$ and its antagonists on the responses of WDR (wide dynamic range) cells to sensory inputs. The responses of WDR cells to graded electrical stimulation of the afferent nerve and also to thermal stimulation of the receptive field were recorded before and after iontophoretical application of $Ca^{++}$, EGTA, $Mn^{++}$, verapamil, ${\omega}-conotoxin$ GVIA, ${\omega}-conotoxin$ MVIIC and ${\omega}-agatoxin$ IVA. Also studied were the effects of a few calcium antagonists on the C-fiber responses of WDR cells sensitized by subcutaneous injection of mustard oil (10%). Calcium ions and calcium channel antagonists ($Mn^{++}$, verapamil, ${\omega}-conotoxin$ GVIA & ${\omega}-agatoxin$ IVA) current-dependently suppressed the C-fiber responses of WDR cells without any significant effects on the A-fiber responses. But ${\omega}-conotoxin$ MVIIC did not have any inhibitory actions on the responses of WDR cell to A-fiber, C-fiber and thermal stimulation. Iontophoretically applied EGTA augmented the WDR cell responses to C-fiber and thermal stimulations while spinal application of EGTA for about $20{\sim}30\;min$ strongly inhibited the C-fiber responses. The augmenting and the inhibitory actions of EGTA were blocked by calcium ions. The WDR cell responses to thermal stimulation of the receptive field were reduced by iontophoretical application of $Ca^{++}$, verapamil, ${\omega}-agatoxin$ IVA, and ${\omega}-conotoxin$ GVIA but not by ${\omega}-conotoxin$ MVIIC. The responses of WDR cells to C-fiber stimulation were augmented after subcutaneous injection of mustard oil (10%, 0.15 ml) into the receptive field and these sensitized C-fiber responses were strongly suppressed by iontophoretically applied $Ca^{++}$, verapamil, ${\omega}-conotoxin$ GVIA and ${\omega}-agatoxin$ IVA. These experimental findings suggest that in the rat spinal cord, L-, N-, and P-type, but not Q-type, voltage-sensitive calcium channels are implicated in the calcium antagonist-induced inhibition of the normal and the sensitized responses of WDR cells to C-fiber and thermal stimulation, and that the suppressive effect of calcium and augmenting action of EGTA on WDR cell responses are due to changes in excitability of the cell.

• 한국생물공학회:학술대회논문집
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• 한국생물공학회 2003년도 생물공학의 동향(XII)
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• pp.40-44
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• 2003

Soil-borne infectious disease including Pythium aphanidermatum and Rhizoctonia solani causes severe damage to plants, such as cucumber. This soil-borne infectious disease was not controlled effectively by chemical pesticide. Since these diseases spread through the soil, chemical agents are usually ineffective. Instead, biological control, including antagonistic microbe can be used as a preferred control method. An efficient method was developed to select an antagonistic strain to be used as a biological control agent strain. In this new method, surface tension reduction potential of an isolate was included in the ‘decision factor’ in addition to the other factors, such as growth rate, and pathogen inhibition rate. Considering these 3 decision factors by a statistical method, an isolate from soil was selected and was identified as Bacillus sp. GB16. In the pot test, this strain showed the best performance among the isolated strains. The lowest disease incidence rate and fastest seed growth was observed when Bacillus sp. GB16 was used. Therefore this strain was considered as plant growth promoting rhizobacteria (PGPR). The action of surface tension reducing component was deduced as the enhancement of wetting, spreading, and residing of antagonistic strain in the rhizosphere. This result showed that new selection method was significantly effective in selecting the best antagonistic strain for biological control of soil-borne infectious plant pathogen. The antifungal substances against P. aphanidermatum and R. solani were partially purified from the culture filtrates of Bacillus sp. GB16. In this study, lipopeptide possessing antifungal activity was isolated from Bacillus sp. GB16 cultures by various purification procedures and was identified as a surfactin-like lipopeptide based on the Fourier transform infrared spectroscopy (FT-IR), nuclear magnetic resonance (NMR), high performance liquid chromatography mass spectroscopy (HPLC-MS), and quadrupole time-of-flight (Q-TOF) ESI-MS/MS data. The lipopeptide, named GB16-BS, completely inhibited the growth of Pythium aphanidermatum, Rhizoctonia solani, Penicillium sp., and Botrytis cineria at concentrations of 10 and 50 mg/L, respectively. A novel method to prevent the foaming and to provide oxygen was developed. During the production of surface active agent, such as lipopeptide (surfactin), large amount of foam was produced by aeration. This resulted in the carryover of cells to the outside of the fermentor, which leads to the significant loss of cells. Instead of using cell-toxic antifoaming agents, low amount of hydrogen peroxide was added. Catalase produced by cells converted hydrogen peroxide into oxygen and water. Also addition of corn oil as an oxygen vector as well as antifoaming agent was attempted. In addition, Ca-stearate, a metal soap, was added to enhance the antifoam activity of com oil. These methods could prevent the foaming significantly and maintained high dissolved oxygen in spite of lower aeration and agitation. Using these methods, high cell density, could be achieved with increased lipopeptide productivity. In conclusion to produce an effective biological control agent for soil-borne infectious disease, following strategies were attempted i) effective screening of antagonist by including surface tension as an important decision factor ii) identification of antifungal compound produced from the isolated strain iii) novel oxygenation by $H_2O_2-catalase$ with vegetable oil for antifungal lipopeptide production.

• 한국산림과학회지
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• 제77권1호
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• pp.1-9
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• 1988

서울시 남산자연공원(南山自然公園)의 식물사회학적 특성을 고려한 식생관리대책을 제시하기 위하여 Belt-transect 법(法)과 방형구법(方形區法)으로 표본조사를 실시하여 남서-북동사면간 식생구조, 주요식물간 경쟁(競爭), 인공조성식생(人工造成植生)의 구조를 분석했으며, 이러한 결과와 기 발표된 결과를 토대로 권역별(圈域別) 식생관리대책(植生管理對策)을 제시했다. 남서사면의 출현 종수(種數), 개체수(個體數)가 북동사면보다 높았으나, 종다양성(種多樣性)은 북동사면이 1.0수준으로 남서사면(0.8~1.3) 보다 안정되었다. 양사면간 상이도(相異度) 및 식물상이도계수(植物相異度係數)(FDC)는 70~80%로서 종구성(種構成)이 이질적이었으며 북동사면에는 신갈나무, 남서사면에는 소나무가 우점종이었다. 주요 수종간 경쟁관계에서는 아까시나무>은사사나무>소나무, 신갈나무>활엽수>소나무, 낙엽활엽수>아까시나무 순(順)으로 우세하였다. 남산에 식재된 조림수종 특히, 잣나무, 젓나무, 독일가문비나무 등의 생육상태가 매우 불량하였으며, 인공조림수종들의 추수(推樹)발생지역에서의 밑깍기작업은 종다양성(種多樣性)을 증대시키는 역할을 하였다. 인공조성식생(人工造成植生)의 군집구조는 기존 자연식생과 상이(相異)하여 생태계의 천이를 방해하고 있었다. 남산자연공원의 관리는 기존 자연생태계를 보존(保存)하되, 필요시 생태계의 천이를 발전시키는 최소한의 인위적(人爲的)관리를 관리목표로 설정하고 6개 식생관리권 즉, 소나무림지역, 신갈나무림지역, 낙엽활엽수림지역, 인공조림지역, 아까시나무림지역 및 조경수목식재지역별 관리대책을 제시하였다.

• 자원환경지질
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• 제40권4호
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• pp.445-459
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• 2007

2005년 3월 경상북도 문경에 설치된 초전도 중력계가 Global Geodynamics Project에 세계 21번째 관측소로 등록되어 현재 정상 운영 중에 있다. 미세한 중력변화를 1mHZ 이하의 저주파 영역에서 $10^{-2}nm/s^2$ 수준의 뛰어난 분해능으로 측정하는 초전도 중력계는 지구 중력의 다양한 주기의 지구중력변화를 감지하고 분석하는데 매우 효과적이다. 문경 초전도 중력 자료의 기초 분석을 위하여 2005년 3월 18일 부터 2006년 2월 21일 사이의 자료를 이용하여 일일주기와 반일주기 성분의 잔여중력을 계산하였다. 기계적 잡음을 제거한 후 기압 및 지하수 보정을 실시하였고, Hartmann-Wenzel 모델과 Whar-Dehant 모델을 이용하여 지구 조석을 보정하였으며 SCW80, FES952, FES2002 해양모델을 이용하여 ocean loading의 영향을 보정하였다. 초전도 중력자료의 신뢰도 검증을 위해 GRACE 인공위성에서 관측된 중력과 비교한 결과, 0.63의 상관관계를 보였다. 한편 2005년 발생한 인도네시아의 수마트라 지진자료를 광대역 지진계(STS-2)자료와 비교한 바, 지진계에서 관측되는 지진신호 및 여진이 감지됨을 확인할 수 있었다.