• Title/Summary/Keyword: OprF

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Role of Two Sets of RND-Type Multidrug Efflux Pump Transporter Genes, mexAB-oprM and mexEF-oprN, in Virulence of Pseudomonas syringae pv. tabaci 6605

  • Ichinose, Yuki;Nishimura, Takafumi;Harada, Minori;Kashiwagi, Ryota;Yamamoto, Mikihiro;Noutoshi, Yoshiteru;Toyoda, Kazuhiro;Taguchi, Fumiko;Takemoto, Daigo;Matsui, Hidenori
    • The Plant Pathology Journal
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    • v.36 no.2
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    • pp.148-156
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    • 2020
  • Pseudomonas syringae pv. tabaci 6605 has two multidrug resistance (MDR) efflux pump transporters, MexAB-OprM and MexEF-OprN. To understand the role of these MDR efflux pumps in virulence, we generated deletion mutants, ΔmexB, ΔmexF, and ΔmexBΔmexF, and investigated their sensitivity to plant-derived antimicrobial compounds, antibiotics, and virulence. Growth inhibition assays with KB soft agar plate showed that growth of the wild-type (WT) was inhibited by 5 μl of 1 M catechol and 1 M coumarin but not by other plant-derived potential antimicrobial compounds tested including phytoalexins. The sensitivity to these compounds tended to increase in ΔmexB and ΔmexBΔmexF mutants. The ΔmexBΔmexF mutant was also sensitive to 2 M acetovanillone. The mexAB-oprM was constitutively expressed, and activated in the ΔmexF and ΔmexBΔmexF mutant strains. The swarming and swimming motilities were impaired in ΔmexF and ΔmexBΔmexF mutants. The flood inoculation test indicated that bacterial populations in all mutant strains were significantly lower than that of WT, although all mutants and WT caused similar disease symptoms. These results indicate that MexAB-OprM extrudes plant-derived catechol, acetovanillone, or coumarin, and contributes to bacterial virulence. Furthermore, MexAB-OprM and MexEF-OprN complemented each other's functions to some extent.

Cell Surface Display of Poly(3-hydroxybutyrate) Depolymerase and its Application

  • Lee, Seung Hwan;Lee, Sang Yup
    • Journal of Microbiology and Biotechnology
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    • v.30 no.2
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    • pp.244-247
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    • 2020
  • We have expressed extracellular poly(3-hydroxybutyrate) (PHB) depolymerase of Ralstonia pickettii T1 on the Escherichia coli surface using Pseudomonas OprF protein as a fusion partner by C-terminal deletion-fusion strategy. Surface display of depolymerase was confirmed by flow cytometry, immunofluorescence microscopy and whole cell hydrolase activity. For the application, depolymerase was used as an immobilized catalyst of enantioselective hydrolysis reaction for the first time. After 48 h, (R)-methyl mandelate was completely hydrolyzed, and (S)-mandelic acid was produced with over 99% enantiomeric excess. Our findings suggest that surface displayed depolymerase on E. coli can be used as an enantioselective biocatalyst.

A Study on the Relationship between the Review Results of Articles and Impact Metrics in an Open Peer Review Platform (오픈 피어 리뷰 환경에서 학술 논문 심사 결과와 영향력 지표 간의 관련성에 관한 연구)

  • Jane Cho;Jong-Do Park
    • Journal of the Korean Society for Library and Information Science
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    • v.57 no.2
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    • pp.79-96
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    • 2023
  • This study analyzed the open peer review results for 585 papers in the field of social sciences in F1000Research, a representative OPR(Open Peer Review) platform, and checked the relationship between the number of cited-by, altmetrics and review score. In addition, by verifying whether the review score shows a moderating effect between the relationship between the utilization of the paper and the cited-by, it was confirmed whether the paper evaluated as high quality in the open review platform can promote the number of cited-by. As a result of the analysis, first, there was no significant difference in the number of cited-by between the approved and conditionally approved paper groups, but the converted review score and the number of cited-by showed a weak positive correlation (r = 0.40 - 0.60). Second, the review score showed a weak correlation with the altmetrics, and it was analyzed that review result could weakly predict the number of cited-by and social impact. Finally, it was verified that the review score performed a significant positive moderating effect (B=1.69, P < 0.01) in making the use of the paper lead to citation. As a result of the conditional effect test, it was verified that it showed the greatest effect(B=11.32, 95% CI [10.57, 12.08]) in the group of papers rated as the highest quality. Therefore, it was analyzed that the open review scores can help researchers select high quality papers and induce citations.

Analyzing the Market Size and the Economic Effects of the Oceans and Fisheries Industry (해양수산업의 시장규모 및 경제적 파급효과 분석)

  • Kim, Joseph;Jung, Dong-Won;Yoo, Seung-Hoon
    • Ocean and Polar Research
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    • v.38 no.1
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    • pp.59-70
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    • 2016
  • Establishing the strategic plans to foster the oceans and fisheries (O&F) industry as an engine for national sustainable economic growth has become an important task for developing countries as well as developed countries. The first step to do so is to identify O&F industry and analyze its economic effects. Therefore, the prime purposes of the paper are two-fold. The first is to identify O&F industry and estimate its market size using 2012 Input-Output (I-O) table published by the Bank of Korea. The second purpose is to obtain some quantitative information on production-inducing effect, value-added creation effect, and employment-inducing effect of the O&F industry. To this end, we apply an IO analysis using exogenous specification of the O&F industry. The results show that the O&F industry covers 4.1% and 3.0% of national output and gross domestic product, respectively. Moreover, we found that 1.0 won of production or investment in the O&F industry induces 1.7363 won of production and 0.4759 won of value-added in the national economy. One billion won of production or investment in the O&F industry touches off 7.5569 persons of employment. This information can be utilized in the O&F industry-related policy-making.

Spatial Variability of Surface fCO2 in the Western North Pacific during Summer 2007 (2007년 여름 북서태평양 이산화탄소 분압의 공간 변동성)

  • Choi, Sang-Hwa;Kim, Dong-Seon;Kim, Kyung-Hee;Min, Hong-Sik
    • Ocean and Polar Research
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    • v.30 no.3
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    • pp.335-345
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    • 2008
  • In order to study spatial variabilities and major controlling factors, we measured fugacity of $CO_2(fCO_2)$, temperature, salinity and nutrients in surface waters of the North Pacific($7^{\circ}30'{\sim}33^{\circ}15'N$, $123^{\circ}56'E{\sim}164^{\circ}24'W$) between September$\sim$October 2007. The North Pacific and the marginal sea were distinguished by $fCO_2$ distribution as well as unique characteristics of temperature and salinity. There was a distinct diurnal SST variation in the tropical North Pacific area, and surface $fCO_2$ coincidently showed diurnal variation. In the North Pacific area, surface $fCO_2$ was mainly controlled by temperature, while in the marginal sea area it was primarily dependent on alkalinity and dissolved inorganic carbon concentrations. Air-sea $CO_2$ flux showed a large spatial variation, with a range of $-6.10{\sim}5.06\;mmol\;m^{-2}day^{-1}$. The center of subtropical gyre of North Pacific acted as a source of $CO_2(3.09{\pm}0.95\;mmol\;m^{-2}day^{-1})$. Tropical western North Pacific (i.e. the 'warm pool' area and the subtropical western North Pacific) acted as weak sources of $CO_2$($1.07{\pm}1.20\;mmol\;m^{-2}day^{-1}$ and $0.50{\pm}0.53\;mmol\;m^{-2}day^{-1}$, respectively). In the marginal sea, however, the flux was estimated to be $-0.68{\pm}1.17\;mmol\;m^{-2}day^{-1}$, indicating that this area acted as a sink for $CO_2$.

The Surface fCO2 Distribution of the Western North Pacific in Summer 2002 (2002년 여름 북서태평양 표층 해수의 이산화탄소 분포 특성)

  • Choi, Sang-Hwa;Kim, Dong-Seon;Shim, Jeong-Hee;Min, Hong-Sik
    • Ocean and Polar Research
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    • v.28 no.4
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    • pp.395-405
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    • 2006
  • We measured the fugacity of $CO_2$ $(fCO_2)$, temperature, salinity, nutrients and chlorophyll a in the surface water of the western North Pacific $(4^{\circ}30'{\sim}33^{\circ}10'N,\;144^{\circ}20'{\sim}127^{\circ}35'E)$ in September 2002. There were zonally several major currents which have characteristics of specific temperature and salinity (NECC, North Equatorial Counter Current; NEC, North Equatorial Current; Kuroshio etc.). Surface $fCO_2$ distribution was clearly distinguished into two groups, tropical and subtropical areas of which boundary was $20^{\circ}N$. In the tropical Int surface $fCO_2$ was mainly controlled by temperature, while in the subtropical area, surface $fCO_2$ was dependent on total inorganic carbon contents. Air-sea $CO_2$ flux showed a large spatial variation, with a range of $-0.69{\sim}0.79 mmole\;m^{-2}day^{-1}$. In the area of AE (Anticyclonic Eddy), SM(Southern Mixed region) and NM (Northern Mixed region), the ocean acted as a weak source of $CO_2$ $(0.6{\sim}0.79 mmole\; m^{-2}day^{-1})$. In NECC, NEC, Kuroshio and ECS (East China Sea), however, the fluxes were estimated to be $-0.3mmole\; m^{-2}day^{-1})$ for the first three regions and $-1.2mmole\; m^{-2}day^{-1})$ for ECS respectively, indicating that these areas acted as sinks of $CO_2$. The average air-sea flux in the entire study area was $0.15mmole\;m^{-2}day^{-1})$, implying that the western North Pacific was a weak source of $CO_2$ during the study period.

The First Record of Monothula subtilis (Giesbrecht, 1893 ["1892"]) (Cyclopoida, Oncaeidae) in the Equatorial Pacific Ocean

  • Cho, Kyuhee;Kim, Woong-Seo
    • Ocean and Polar Research
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    • v.40 no.1
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    • pp.23-35
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    • 2018
  • A small cyclopoid copepod M. subtilis (Giesbrecht, 1893 ["1892"]) belonging to the genus Monothula $B{\ddot{o}}ttger-Schnack$ and Huys, 2001 was collected by using $60{\mu}m$ mesh net and firstly recorded in the epipelagic layer of the equatorial Pacific Ocean. We redescribed its morphological characteristics for both female and male, comparing with those of previous studies. Specimens of M. subtilis from the equatorial Pacific Ocean differ from those previously reported by others in terms of the length of the seta G on antenna, being much shorter than setae E and F; in the distal spine on the swimming leg 4, being longer than the length of the third segment on P4. The outer spine of the P3 enp-3 in male is slightly over the tip of conical process. The spine lengths of the distal endopods of P2-P4 for both sexes showed variations among individuals, and the proportions of spine lengths in female are higher than those in male.

Effect of 17β-estradiol on Life History Parameters and Morphological Deformities in Tigriopus japonicus sensu lato: A Two-generation Studies (17β-estradiol에 노출된 저서성 요각류 Tigriopus japonicus s.l.의 세대간 생활사 및 형태학적 변이 연구)

  • Bang, Hyun-Woo;Lim, Dong-Hyun;Lee, Won-Choel
    • Ocean and Polar Research
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    • v.32 no.4
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    • pp.369-377
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    • 2010
  • To characterize ecotoxicological responses to a natural estrogen, $17{\beta}$-estradiol, we evaluated the life-history of the parental ($F_0$) and first generation ($F_1$) of the harpacticoid copepod, Tigriopus japonicus sensu lato. We evaluated the survival of nauplii and copepodites, the number of days until the emergence of copepodites and adult males, the sex ratio, brooding success, and the first brooding day of adult females. No significant differences in the survival rate were noted in response to treatments with different concentrations of $17{\beta}$-estradiol. However, $17{\beta}$-estradiol induced developmental delay and skewed the sex ratio toward males. Copepod development was delayed significantly in the 0.1 and $1\;{\mu}g\;l^{-1}$ $17{\beta}$-estradiol treatment groups relative to the control group, with a more pronounced delay in the $F_1$ group. Body length and biomass were significantly smaller in the $17{\beta}$-estradiol treated groups than in the controls. The male emergence of T. japonicus s.l. was very high in the 10 and $30\;{\mu}g\;l^{-1}$ $17{\beta}$-estradiol treatment group. Furthermore, exposure to $17{\beta}$-estradiol resulted in morphological deformities such as shrinking and swelling of the urosome, twisted setae of the caudal rami, setal loss of swimming legs, abnormal segmentation of antennules, and dwarfism.

Search for Gravity Waves with n New All-sky Camera System

  • Kim, Yong-Ha;Chung, Jong-Kyun;Won, Yong-In;Lee, Bang-Yong
    • Ocean and Polar Research
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    • v.24 no.3
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    • pp.263-266
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    • 2002
  • Gravity waves have been searched for with a new all-sky camera system over Korean Peninsular. The all-sky camera consists of a 37mm/F4.5 Mamiya fisheye lens with a 180 dog field of view, interference filters and a 1024 by 1024 CCD camera. The all-sky camera has been tested near Daejeon city, and moved to Mt. Bohyun where the largest astronomical telescope is operated in Korea. A clear wave pattern was successfully detected in OH filter images over Mt. Bohyun on July 18, 2001, indicating that small scale coherent gravity waves perturbed OH airglow near the mesopause. Other wave features are since then observed with Na 589.8nm and OI 630.0nm filters. Since a Japanese all-sky camera network has already detected traveling ionospheric disturbances (TID) over the northeast-southwest range of Japanese islands, we hope our all-sky camera extends the coverage of the TID's observations to the west direction. We plan to operate our all-sky camera all year around to study seasonal variation of wave activities over the mid-latitude upper atmosphere.

Development of ETSS for the SG Secondary Side Loose Part Signal Detection and Characterization (SG전열관 2차측 이물질 검출 및 특성분석을 위한 ETSS 개발)

  • Shin, Ki Seok;Moon, Yong Sig;Min, Kyong Mahn
    • Transactions of the Korean Society of Pressure Vessels and Piping
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    • v.7 no.3
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    • pp.61-66
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    • 2011
  • The integrity of the SG(Steam Generator) tubes has been challenged by numerous factors such as flaws, operation, atmosphere, inherently degraded materials, loose parts and even human errors. Of the factors, loose parts(or foreign materials) on the secondary side of the tubes can bring about volumetric defects and even leakage from the primary to the secondary side in a short period of time. More serious concerns about the loose parts are their unknown influx path and rapid growth rate of the defects affected by the loose parts. Therefore it is imperative to detect and characterize the foreign materials and the defects. As a part of the measures for loose part detection, TTS(Top of Tubesheet) MRPC(Motorized Rotating Pancake Coils) ECT has been carried out especially to the restricted high probability area of the loose part. However, in the presence of loose parts in the other areas, wide range loose part detection techniques are required. In this study, loose part standard tube was presented as a way to accurately detect and characterize loose part signals. And the SG tube ECT bobbin coil and MRPC ISI(In-service Inspection) data of domestic OPR-1000 and Westinghouse Model F(W_F) were reviewed and consequently, comprehensive loose part detection technique is derived especially by applying bobbin coil signals