• The Journal of the Korea Contents Association
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• v.10 no.10
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• pp.102-110
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• 2010

Alternative splicing is an important process in gene expression. Alternative Splicing can lead to mutations and diseases. Most studies detect alternatively spliced genes with ESTs (Expressed Sequence Tags). However, reliance on ESTs might have some weaknesses in predicting alternative splicing. ESTs have been stored in the libraries. The EST libraries are often not clearly organized and annotated. We can pick erroneous ESTs. It is also difficult to predict whether or not alternative splicing exists for those genes where ESTs are not available. To address these issues and to improve the quality of detection and prediction for alternative splicing, we propose the One-leaf One-node Tree Algorithm that uses pre-mRNAs. It is achieved by codons, three nucleotides, as attributes for each chromosome in Arabidopsis thaliana. The proposed decision tree shows that alternative and normal splicing have different splicing patterns according to triplet nucleotides in each chromosome. Based on the patterns, alternative splicing of unlabeled genes can also be predicted.

• Journal of the Korean Association of Geographic Information Studies
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• v.17 no.4
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• pp.101-111
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• 2014

Spatial events are predictable using data mining classification algorithms. Decision trees have been used as one of representative classification algorithms. And they were normally used in the classification tasks that have label class values. However since using rule ranking methods, spatial prediction have been applied in the spatial prediction problems. This paper compared rule ranking methods for the spatial prediction application using a decision tree. For the comparison experiment, C4.5 decision tree algorithm, and rule ranking methods such as Laplace, M-estimate and m-branch were implemented. As a spatial prediction case study, landslide which is one of representative spatial event occurs in the natural environment was applied. Among the rule ranking methods, in the results of accuracy evaluation, m-branch showed the better accuracy than other methods. However in case of m-brach and M-estimate required additional time-consuming procedure for searching optimal parameter values. Thus according to the application areas, the methods can be selectively used. The spatial prediction using a decision tree can be used not only for spatial predictions, but also for causal analysis in the specific event occurrence location.

• Journal of KIISE:Databases
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• v.31 no.3
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• pp.261-273
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• 2004

Advances in information and communication technologies have been creating new classes of applications in the area of databases. For example, in moving object databases, which track positions of a lot of objects, or stream databases, which process data streams from a lot of sensors, data Processed in such database systems are usually changed very rapidly and continuously. However, traditional database systems have a problem in processing these rapidly and continuously changing data because they suppose that a data item stored in the database remains constant until It is explicitly modified. The problem becomes more serious in the R-tree, which is a typical index structure for multidimensional data, because modifying data in the R-tree can generate cascading node splits or merges. To process frequent updates more efficiently, we propose a novel update technique for the R-tree, which we call the leaf-update technique. If a new value of a data item lies within the leaf MBR that the data item belongs, the leaf-update technique changes the leaf node only, not whole of the tree. Using this leaf-update manner and the leaf-access hash table for direct access to leaf nodes, the proposed technique can reduce update cost greatly. In addition, the leaf-update technique can be adopted in diverse variants of the R-tree and various applications that use the R-tree since it is based on the R-tree and it guarantees the correctness of the R-tree. In this paper, we prove the effectiveness of the leaf-update techniques theoretically and present experimental results that show that our technique outperforms traditional one.

• Journal of KIISE:Databases
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• v.30 no.6
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• pp.651-665
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• 2003

To reduce cache misses emerges as the most important issue in today's situation of main memory databases, in which CPU speeds have been increasing at 60% per year, and memory speeds at 10% per year. Recent researches have demonstrated that cache-conscious index structure such as the CR-tree outperforms the R-tree variants. Its search performance can be poor than the original R-tree, however, since it uses a lossy compression scheme. In this paper, we propose alternatively a cache-conscious version of the R-tree, which we call MR-tree. The MR-tree propagates node splits upward only if one of the internal nodes on the insertion path has empty room. Thus, the internal nodes of the MR-tree are almost 100% full. In case there is no empty room on the insertion path, a newly-created leaf simply becomes a child of the split leaf. The height of the MR-tree increases according to the sequence of inserting objects. Thus, the HeightBalance algorithm is executed when unbalanced heights of child nodes are detected. Additionally, we also propose the CCMR-tree in order to build a more cache-conscious MR-tree. Our experimental and analytical study shows that the two-dimensional MR-tree performs search up to 2.4times faster than the ordinary R-tree while maintaining slightly better update performance and using similar memory space.