| 1 |
L. Breiman, J. H. Friedman, R. A. Olshen, and C. J. Stone, Classification and Regression Trees. Wadsworth International Group, 1984.
|
| 2 |
I. Witten and E. Frank, Data Mining: Practical Machine Learning Tools and Techniques with JAVA Implementations. Academic Press, 2000.
|
| 3 |
A. Nabhan and A. Rafea, "Tuning statistical machine translation parameters using perplexity," in Proceedings of the 2005 IEEE International Conference on Information Reuse and Integration, pp.338-343, 2005.
DOI
|
| 4 |
E. Brand and R. Gerritsen, "Decision Trees," DBMS Online, 1988, http://www.dbmsmag. com/-9807m05.html.
|
| 5 |
K. Delisle, "Decision Trees and Evolutionary Programming," Artificial Intelligence Depot., Tech. Report, http://aidepot.com/Tutorial/ DecisionTrees .html.
|
| 6 |
C. Burge and S. Karlin, "Prediction of complete gene structures in human genomic DNA," Journal of Molecular Biology, Vol.268, pp.78-94, 1997.
DOI
ScienceOn
|
| 7 |
H. Zhang and C. Yu, "Tree-based analysis of microarray data for classifying breast cancer," Frontiers in Bioscience, Vol.7, pp.C63-C67, 2002.
DOI
|
| 8 |
W. Zhu, S. Schlueter, and V. Brendel, "Refined annotation of the Arabidopsis Thaliana genome by complete EST mapping," Plant Physiology, Vol.132, pp.469-484, 2003.
DOI
ScienceOn
|
| 9 |
C. Iseli, V. Jongeneel, and P. Bucher, "ESTScan: A program for detecting, evaluating, and reconstructing potential coding regions in EST sequences," in Proceedings of the Seventh ISMB, pp.138-148, 1999.
|
| 10 |
C. Jongeneel, "Searching the expressed sequence tag (EST) databases: panning for genes," Briefings in Bioinformatics, Vol.1, pp.76-92, 2000.
DOI
|
| 11 |
J. Collins, M. Goward, C. Cole, L. Smink, E. Huckle, S. Knowles, J. M. Bye, D. Beare, and I. Dunham, "Reevaluating human gene annotation: a second-generation analysis of chromosome 22," Genome Research, Vol.13, pp.27-36, 2003.
DOI
ScienceOn
|
| 12 |
D. Raghunandan, L. Guglielmo, D. K., and A. Animesh, "Clinical applications of DNA microarray analysis," Journal of Experimental Therapeutics and Oncology, Vol.3, pp.297-304, 2003.
DOI
ScienceOn
|
| 13 |
S. Mehta, "DNA Microarrays in Health Care & Drug Discovery," http://plasticdog.cheme.colum bia.edu/.
|
| 14 |
G. Hu, S. Madore, B. Moldever, T. Jatkoe, D. Balaban, J. Thomas, and Y. Want, "Predicting Splice Variant from DNA Chip Expression Data," Genome Research, Vol.11, pp.1237-1245, 2001.
DOI
ScienceOn
|
| 15 |
E. Garrett-Mayer and G. Parmigiani, "Clustering and Classification Methods for Gene Expression Data Analysis," Johns Hopkins University, Dept. of Biostatistics Working Papers, Vol.70, 2004.
|
| 16 |
T. Cover and P. Hart, "Nearest Neighbor Pattern Classification," in Proceedings of IEEE Transaction on Information Theory, pp.21-27, 1967.
DOI
ScienceOn
|
| 17 |
R. Fisher, "The use of multiple measurements in taxonomic problems," Annals of Eugenics, Vol.7, pp.178-188, 1936.
|
| 18 |
V. Vapnik, Statistical Learning Theory. New York, NY: John Wiley & Sons, 1998.
|
| 19 |
S. Stamm, J. Riethoven, V. Le Texier, C. Gopalakrishnan, V. Kumanduri, Y. Tang, N. Barbosa-Morais, and T. Thanaraj, "ASD: a bioinformatics resource on alternative splicing," Nucleic Acids Research, Vol.34, pp.D46–D55, 2006.
DOI
ScienceOn
|
| 20 |
http://www.ncbi.nlm.nih.gov.
|
| 21 |
http://www.arabidopsis.org.
|
| 22 |
B. Haas, A. Delcher, S. Mount, J. Wortman, R. Smith Jr, L. Hannick, R. Maiti, C. Ronning, D. Rusch, C. Town, S. Salzberg, and O. White, "Improving the Arabidopsis genome annotation using maximal transcript alignment assemblies," Nucleic Acids Research, Vol.31, pp.5654-5666, 2003.
DOI
ScienceOn
|
| 23 |
M. Campbell, B. Haas, J. Hamilton, S. Mount, and C. Buell, "Comprehensive analysis of alternative splicing in rice and comparative analyses with Arabidopsis," BMC Genomics, Vol.7, p.327, 2006.
DOI
ScienceOn
|
| 24 |
R. Nurtdinov, I. Artamonova, A. Mironov, and M. Gelfand, "Low conservation of alternative splicing patterns in the human and mouse genomes," Human Molecular Genetic, Vol.12, pp.1313-1320, 2003.
DOI
ScienceOn
|
| 25 |
http://www.tigr.org
|
| 26 |
D. Black, "Mechanisms of alternative pre-messenger RNA splicing," Annual Review of Biochemistry, Vol.72, pp.291-336, 2003.
DOI
ScienceOn
|
| 27 |
K. Iida, M. Seki, T. Sakurai, M. Satou, K. Akiyama, T. Toyoda, A. Konagaya, and K. Shinozaki, "Genome-wide analysis of alternative pre-mRNA splicing in Arabidopsis Thaliana based on full-length cDNA sequences," Nucleic Acids Re-search, Vol.32, pp.5096-5103, 2004.
DOI
ScienceOn
|
| 28 |
M. Pertea, X. Lin, and S. Salzberg, "GeneSplicer: a new computational method for splice site prediction," Nucleic Acids Research, Vol.29, pp.1185-1190, 2001.
DOI
ScienceOn
|
| 29 |
B. Wang and V. Brendel, "Genomewide comparative analysis of alternative splicing in plants," in Proceedings of the National Academy of Science of the United States of America, pp.7175-7180, 2006.
DOI
ScienceOn
|
| 30 |
T. Chuang, F. Chen, and M. Chou, "A compareative method for identification of gene structures and alternatively spliced variant," Bioinformatics, Vol.20, pp.3064-3079, 2004.
DOI
ScienceOn
|
| 31 |
R. Sorek, R. Shemesh, Y. Cohen, O. Basechess, G. Ast, and R. Shamir, "A Non-EST-Based Method for Exon-Skipping Prediction," Genome Research, Vol.14, pp.1617-1623, 2004.
DOI
ScienceOn
|
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