• Korean Journal of Organic Agriculture
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• v.25 no.4
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• pp.805-819
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• 2017

The study was carried out to develop a mathematical model for evaluating the effect of organic fertilizers in organic rice production systems. A function to simulate the nitrogen mineralization process in the paddy soil has been developed and integrated into ORYZA2000 crop growth model. Inorganic nitrogen in the soil was estimated by single exponential models, given temperature and C:N ratio of organic amendments. Data collected from the two-year field experiment were used to evaluate the performance of the model. The revised version of ORYZA2000 provided reasonable estimates of key variables for nitrogen dynamics and crop growth in the organic rice production systems. Coefficient of determination between the measured value and simulated value were 0.6613, 0.8938, and 0.8092, respectively for soil inorganic nitrogen, total dry matter production, and rice yield. This means that the model could be used to quantify nitrogen supplying capacity of organic fertilizers relative to chemical fertilizer. Nitrogen dynamics and rice growth simulated by the model would be useful information to make decision for organic fertilization in organic rice production systems.

• Korean Journal of Agricultural and Forest Meteorology
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• v.19 no.4
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• pp.246-251
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• 2017

Crop models have been used to predict a heading date for efficient management of fertilizer application. Recently, the ORYZA (v3) model was developed to improve the ORYZA2000 model, which has been used for simulation of rice growth in Korea. Still, little effort has been made to assess applicability of the ORYZA (v3) model to rice farms in Korea. The objective of this study was to evaluate reliability of heading dates predicted using the the ORYZA (v3) model, which would indicate applicability of the model to a decision support system for fertilizer application. Field experiments were conducted from 2015-2016 at the Rural Development Administration (RDA) to obtain rice phenology data. Shindongjin cultivar which is mid-late maturity type was grown under a conventional fertilizer management, e.g., application of fertilizer at the rate of 11 Kg N/10a. Another set of heading dates was obtained from annual reports at experiment farms operated by the National Institute of Crop Science and Agricultural Technology Centers in each province. The input files for the ORYZA (v3) model were prepared using weather and soil data collected from the Korean Meteorology Administration (KMA) and the Korean Soil Information System, respectively. Input parameters for crop management, e.g., transplanting date and planting density, were set to represent management used for the field experiment. The ORYZA (v3) model predicted heading date within 1 day for two seasons. The crop model also had a relatively small error in prediction of heading date for three ecotypes of rice cultivars at experiment farms where weather input data were obtained from a near-by weather station. Those results suggested that the ORYZA (v3) model would be useful for development of a decision support system for fertilizer application when reliable input data for weather variables become available.

• Korean Journal of Agricultural and Forest Meteorology
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• v.19 no.4
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• pp.270-279
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• 2017

Regional assessment of crop productivity using a gridded simulation approach could aid policy making and crop management. Still, little effort has been made to develop the systems that allows gridded simulations of crop growth using ORYZA 2000 model, which has been used for predicting rice yield in Korea. The objectives of this study were to develop a series of data processing modules for creating input data files, running the crop model, and aggregating output files in a region of interest using gridded data files. These modules were implemented using C++ and R to make the best use of the features provided by these programming languages. In a case study, 13000 input files in a plain text format were prepared using daily gridded weather data that had spatial resolution of 1km and 12.5 km for the period of 2001-2010. Using the text files as inputs to ORYZA2000 model, crop yield simulations were performed for each grid cell using a scenario of crop management practices. After output files were created for grid cells that represent a paddy rice field in South Korea, each output file was aggregated into an output file in the netCDF format. It was found that the spatial pattern of crop yield was relatively similar to actual distribution of yields in Korea, although there were biases of crop yield depending on regions. It seemed that those differences resulted from uncertainties incurred in input data, e.g., transplanting date, cultivar in an area, as well as weather data. Our results indicated that a set of tools developed in this study would be useful for gridded simulation of different crop models. In the further study, it would be worthwhile to take into account compatibility to a modeling interface library for integrated simulation of an agricultural ecosystem.

• Korean Journal of Agricultural and Forest Meteorology
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• v.22 no.1
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• pp.20-25
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• 2020

Spatial simulation of crop growth often requires application of management conditions to each cell. In particular, it is of great importance to determine the temperature conditions during the nursery period for rice seedlings, which would affect heading date projections. The objective of this study was to determine the value of TMPSB, which is the parameter of ORYZA2000 model to represent temperature increase under a plastic tunnel during the rice seedling periods. Candidate values of TMPSB including 0℃, 2℃, 5℃, 7℃ and 9℃ were used to simulate rice growth and yield. Planting dates were set from mid-April to mid-June. The simulations were performed at four sites including Cheorwon, Suwon, Seosan, and Gwangju where climate conditions at rice fields common in Korea can be represented. It was found that the TMPSB values of 0℃ and 2℃ resulted in a large variation of heading date due to low temperature occurred in mid-April. When the TMPSB value was >7℃, the variation of heading date was relatively small. Still, the TMPSB value of 5℃ resulted in the least variation of heading date for all the planting dates. Our results suggested that the TMPSB value of 5℃ would help reasonable assessment of climate change impact on rice production when high resolution gridded weather data are used as inputs to ORYZA2000 model over South Korea.

• Proceedings of the Korean Society of Crop Science Conference
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• 2004.04a
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• pp.104-105
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• 2004

[ $\bigcirc$ ] In the phenology model of ORYZA2000, the effect of photoperiod on the developmental rate was a little ignored because most crop parameters were measured with IRRI varieties which are insensitive to photoperiod, therefore it is very difficult to apply this phenology model directly to Korean varieties which are usually sensitive to photoperiod. $\bigcirc$ After introducing PPFAC and PPSE to improve the phenology model, the precision of heading date prediction was improved but not satisfied. $\bigcirc$ In the growth simulation using data from several regions, yield tended to be overestimated under high nitrogen applicated condition. $\bigcirc$ The precision of yield was much improved by introducing nitrogen use efficiency, but still different between regions because of different soil fertility or property of irrigation water between regions

• Journal of Plant Biotechnology
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• v.2 no.2
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• pp.89-96
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• 2000

For large DNA fragment transformation in dicots and monocots, BIBAC2 vector system was applied to Arabidopsis thaliana and Oryza sativa L. cv. Jinmi as a model plant, respectively. For Arabidopsis, the Th1 gene in T23L3 BAC clone whose size is about 90 kb was used as the target gene source for transformation. Because T23L3 BAC clone was originally constructed in pBelloBAC11, the target gene was reconstructed into BIBAC2. As the results of reconstruction, 476 colonies were survived in selection medium containing 40 mg/L kanamycin. In colony hybridization analysis, 24 out of 476 colonies exhibited positive signals. In the pulsed-field gel electrophoresis analysis, 11 out of 24 positive clones exhibited the band at the location of 90 kb. In Southern hybridization, positive signal band at the location of 90 kb was observed in all 11 transformants. Using these verified clones, Agrobacterium-mediated transformation was applied to Arabidopsis thaliana th1-201 mutant for genetic complementation test. Twelve thousands T$_1$ seeds were harvested, and antibiotic selection test is being analyzed to verify whether these seeds were transformed. for rice, COR356 that contains 150 kb human genomic DNA in a BIBAC2 vector was used as the target gene. As the results of transformation, 151 out of 210 co-cultivated calli were survived in selection medium containing 5 mg/L hygromycin, and 45 out of 151 survived calli were regenerated into plants. Transformation efficiency was 21.6%. Progeny test using 71 seeds is being analyzed now. These results provide the potential that large DNA fragments can be transferred into both dicots and monocot by Agrobacterium-mediate d transformation system.

• Korean Journal of Agricultural and Forest Meteorology
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• v.21 no.3
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• pp.167-174
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• 2019

A process-oriented crop growth model can simulate the biophysical process of rice under diverse environmental and management conditions, which would make it more versatile than an empirical crop model. In the present study, we examined chronology and background of the development of the rice growth models in Korea, which would provide insights on the needs for improvement of the models. The rice crop growth models were introduced in Korea in the late 80s. Until 2000s, these crop models have been used to simulate the yield in a specific area in Korea. Since then, improvement of crop growth models has been made to take into account biological characteristics of rice growth and development in more detail. Still, the use of the crop growth models has been limited to the assessment of climate change impact on crop production. Efforts have been made to apply the crop growth model, e.g., the CERES-Rice model, to develop decision support system for crop management at a farm level. However, the decision support system based on a crop growth model was attractive to a small number of stakeholders most likely due to scarcity of on-site weather data and reliable parameter sets for cultivars grown in Korea. The wide use of the crop growth models would be facilitated by approaches to extend spatial availability of reliable weather data, which could be either measured on-site or estimates using spatial interpolation. New approaches for calibration of cultivar parameters for new cultivars would also help lower hurdles to crop growth models.

• Korean Journal of Agricultural and Forest Meteorology
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• v.19 no.3
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• pp.174-179
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• 2017

Soil parameters are required inputs to crop models, which estimate crop yield under a given environment condition. The Korean Soil Information System (KSIS), which provides detailed soil profile record of 390 soil series in the HTML (HyperText Markup Language) format, would be useful to prepare soil input files. Korean Soil Information System Processing Tool (KSISPT) was developed to aid generation of soil input data based on the KSIS database. Java was used to implement the tool that consists of a set of modules for parsing the HTML document of the KSIS, storing data required for preparing soil input file, calculating additional soil parameter, and writing soil input file to a local disk. Using the automated soil data preparation tool, about 940 soil input data were created for the DSSAT model and the ORYZA 2000 model, respectively. In combination with soil series distribution map at 30m resolution, spatial analysis of crop yield could be projected under climate change, which would help the development of adaptation strategies.

• Korean Journal of Agricultural and Forest Meteorology
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• v.21 no.1
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• pp.42-54
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• 2019

Crop models depend on a large number of input parameters including the cultivar parameters that represent the genetic characteristics of a given cultivar. The cultivar parameters have been estimated using high quality data for crop growth, which require considerable costs and efforts. The objective of this study was to examine the feasibility of using low quality data for the parameter estimation. In the present study, the cultivar parameters for cv. Shindongjin were estimated using the data obtained from the report of new cultivars development and research from 2005 to 2016. The root mean square errors (RMSE) of the heading dates were less than 3 days when the parameters associated with phenology were estimated. In contrast, the coefficient of determination for yield tended to be less than 0.1. The large errors incurred by the fact that no growth data collected over a season was used for parameter estimation. This suggests that detailed observation data needs to be prepared for parameter calibration, which would be aided by remote sensing approaches. The occurrence of natural disasters during a growing season has to be considered because crop models cannot take into account the effects of those events. Still, our results provide a reasonable range for the parameters, which could be used to set the boundary of a given parameter for cultivars similar to cv. Shindongjin in further studies.

• Korean Journal of Agricultural and Forest Meteorology
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• v.14 no.4
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• pp.207-221
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• 2012

Air temperature in Korea has increased by $1.5^{\circ}C$ over the last 100 years, which is nearly twice the global average rate during the same period. Moreover, it is projected that such change in temperature will continue in the 21st century. The objective of this study was to evaluate the potential impacts of future climate change on the rice production and adaptation methods in Korea. Climate data for the baseline (1971~2000) and the three future climate (2011~2040, 2041~2070, and 2071~2100) at fifty six sites in South Korea under IPCC SRES A1B scenario were used as the input to the rice crop model ORYZA2000. Six experimental schemes were carried out to evaluate the combined effects of climatic warming, $CO_2$ fertilization, and cropping season on rice production. We found that the average production in 2071~2100 would decrease by 23%, 27%, and 29% for early, middle, and middle-late rice maturing type, respectively, when cropping seasons were fixed. In contrast, predicted yield reduction was ~0%, 6%, and 7%, for early, middle, and middle-late rice maturing type, respectively, when cropping seasons were changed. Analysis of variation suggested that climatic warming, $CO_2$ fertilization, cropping season, and rice maturing type contributed 60, 10, 12, and 2% of rice yield, respectively. In addition, regression analysis suggested 14~46 and 53~86% of variations in rice yield were explained by grain number and filled grain ratio, respectively, when cropping season was fixed. On the other hand, 46~78 and 22~53% of variations were explained respectively with changing cropping season. It was projected that sterility caused by high temperature would have no effect on rice yield. As a result, rice yield reduction in the future climate in Korea would resulted from low filled grain ratio due to high growing temperature during grain-filling period because the $CO_2$ fertilization was insufficient to negate the negative effect of climatic warming. However, adjusting cropping seasons to future climate change may alleviate the rice production reduction by minimizing negative effect of climatic warming without altering positive effect of $CO_2$ fertilization, which improves weather condition during the grain-filling period.