• Title/Summary/Keyword: Non-negative matrix

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High Expression of Matrix Metalloproteinase-11 indicates Poor Prognosis in Human Cholangiocarcinoma

  • Tongtawee, Taweesak;Kaewpitoon, Soraya J;Loyd, Ryan;Chanvitan, Supachai;Leelawat, Kawin;Praditpol, Niphol;Jujinda, Supathip;Kaewpitoon, Natthawut
    • Asian Pacific Journal of Cancer Prevention
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    • v.16 no.9
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    • pp.3697-3701
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    • 2015
  • Background: Cholangiocarcinoma (CHCA) is serious public health problem in Thailand, especially in the northeastern and northern regions. CHCA is known as one of the most aggressive malignant tumors associated with local invasion and a high rate of metastasis. A crucial step in the invasion process is the proteolytic degradation of the extracellular matrix (ECM) and basal membranes, for which several studies have shown a critical role played by matrix metalloproteinase-11 (MMP-11). Objective: This study aim to detect MMP-11 expression in CHCA specimens and any correlation with survival time. Materials and Methods: A retrospective analysis was conducted of 30 patients with CHCA in Rajvithi hospital, who had undergone immunohistochemical staining of MMP-11. Relationships between clinicopathological data and MMP-11 expression in CHCA specimens were analyzed by the ${\chi}^2$ test or Fisher's exact test. The estimated survival and the survival differences were analyzed by the Kaplan-Meier method and the log-rank test, respectively. Results: MMP-11 expression was found in 15 specimens (50%). The overall mean survival time is 237.0 days (95% CI 135.4-338.5, SD 271.9). Specimens with a positive MMP-11 had an average survival time of 136.7 days (95%CI 50.3-223.1, SD 156.0). Survival differences was signficant for the positive and negative MMP-11(p=0.022), but not well differentiated tumor and moderate to poor differentiated tumor (p=0.755), CA19-9 level of >1,000 and <1,000 (p=0.488), and between advanced and non-advanced staging (p=0.388). Conclusions: The positive MMP-11 expression indicates poor prognosis in CHCA specimens.

Research on Business Job Specification through Employment Information Analysis (채용정보 분석을 통한 비즈니스 직무 스펙 연구)

  • Lee, Jong Hwa;Lee, Hyun Kyu
    • The Journal of Information Systems
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    • v.31 no.1
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    • pp.271-287
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    • 2022
  • Purpose This research aims to study the changes in recruitment needed for the growth and survival of companies in the rapidly changing industry. In particular, we built a real company's worklist accounting for the rapidly advancing data-driven digital transformation, and presented the capabilities and conditions required for work. Design/methodology/approach we selected 37 jobs based on NCS to develop the employment search requirements by analyzing the business characteristics and work capabilities of the industry and company. The business specification indicators were converted into a matrix through the TF-IDF process, and the NMF algorithm is used to extract the features of each document. Also, the cosine distance measurement method is utilized to determine the similarity of the job specification conditions. Findings Companies tended to prefer "IT competency," which is a specification related to computer use and certification, and "experience competency," which is a specification for experience and internship. In addition, 'foreign language competency' was additionally preferred depending on the job. This analysis and development of job requirements would not only help companies to find the talents but also be useful for the jobseekers to easily decide the priority of their specification activities.

Mono-To-Stereo Blind Upmix Using Non-Negative Matrix Factorization and Decorrelator (비음수 행렬 분해와 디코릴레이터를 이용한 모노-스테레오 블라인드 업믹스 기법)

  • Choi, Keun-Woo;Chon, Sang-Bae;Lee, Seok-Jin;Sung, Koeng-Mo
    • The Journal of the Acoustical Society of Korea
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    • v.29 no.8
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    • pp.509-515
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    • 2010
  • This paper presents a new method for upmixing mono signal to stereo signal with guaranteeing high stereophonic image quality (SIQ) and large apparent source width (ASW). The proposed method consists of analysis phase and synthesis phase. In analysis phase, a mono signal is first decomposed into multiple sound sources by the use of high-rank nonnegative matrix factorization. Then the multiple sources are clustered into two groups based on tonality criterion. In synthesis phase, one group is directly fed into left and right channels while the other group is decorrelated before being fed into each channel. Subjective tests reveals that the proposed method gives listener high SIQ and large ASW with minimizing timbral distortions.

Statistical Voice Activity Detection Using Probabilistic Non-Negative Matrix Factorization (확률적 비음수 행렬 인수분해를 사용한 통계적 음성검출기법)

  • Kim, Dong Kook;Shin, Jong Won;Kwon, Kisoo;Kim, Nam Soo
    • The Journal of Korean Institute of Communications and Information Sciences
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    • v.41 no.8
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    • pp.851-858
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    • 2016
  • This paper presents a new statistical voice activity detection (VAD) based on the probabilistic interpretation of nonnegative matrix factorization (NMF). The objective function of the NMF using Kullback-Leibler divergence coincides with the negative log likelihood function of the data if the distribution of the data given the basis and encoding matrices is modeled as Poisson distributions. Based on this probabilistic NMF, the VAD is constructed using the likelihood ratio test assuming that speech and noise follow Poisson distributions. Experimental results show that the proposed approach outperformed the conventional Gaussian model-based and NMF-based methods at 0-15 dB signal-to-noise ratio simulation conditions.

Effect of Grape Seed Proanthocyanidins on Tumor Vasculogenic Mimicry in Human Triple-negative Breast Cancer Cells

  • Luan, Yun-Yan;Liu, Zi-Min;Zhong, Jin-Yi;Yao, Ru-Yong;Yu, Hong-Sheng
    • Asian Pacific Journal of Cancer Prevention
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    • v.16 no.2
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    • pp.531-535
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    • 2015
  • Vasculogenic mimicry (VM) refers to the unique ability of highly aggressive tumor cells to mimic the pattern of embryonic vasculogenesis, which was associated with invasion and metastasis. The grape seed proanthocyanidins (GSPs) had attracted much attention as a potential bioactive anti-carcinogenic agent. However, GSPs regulation of VM and its possible mechanisms in a triple-negative breast cancer cells (TNBCs) remain not clear. Therefore, we examined the effect of GSPs on VM information in HCC1937 cell model. In this study, we identified the VM structure via the three-dimensional (3D) matrix in vitro. Cell viability was measured using the CCK8 assay. The effects of GSPs on human triple-negative breast cancer cells (TNBCs) HCC1937 in terms of related proteins of VM information were determined using western blot analysis. In vitro, the tubular networks were found in highly invasive HCC1937 cells but not in the non-invasive MCF-7 cells when plated on matrigel. The number of vascular channels was significantly reduced when cells were exposed in GSPs ($100{\mu}g$/ml) and GSPs ($200{\mu}g/mL$) groups (all p<0.001). Furthermore, we found that treatment with GSPs promoted transition of the mesenchymal state to the epithelial state in HCC1937 cells as well as reducing the expression of Twist1 protein, a master EMT regulator.GSPs has the ability to inhibit VM information by the suppression of Twist1 protein that could be related to the reversal of epithelial-to-mesenchymal (EMT) process. It is firstly concluded that GSPs may be an p otential anti-VM botanical agent for human TNBCs.

Photoimmunological and Photobiological Action of Infrared Radiation

  • Danno, Kiichiro
    • Journal of Photoscience
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    • v.9 no.2
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    • pp.194-196
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    • 2002
  • While ultraviolet radiation alters various cutaneous cell functions, little is known about photo-immunological and photobiological effects of infrared radiation (IR) on the skin except its local thermal effects. The fIrst part of this study demonstrated that single exposure of mouse skin to near IR (0.7 - 1.3 $\mu$m) reversibly suppressed the proliferating activity of the epidermis, the density of Langerhans cells, and the ability of skin to induce contact hypersensitivity reaction. The second part demonstrated that the rate of wound closure was significantly accelerated by repeated exposures in animal models. The production of transforming growth factor-$\beta$l and matrix metalloproteinase-2, which are responsible for the wound healing processes, was significantly upregulated by irradiation, as shown by enzyme immunoassay, zymography, and reverse transcription polymerase chain reaction. Thermal controls were negative. The results suggest that near-IR irradiation can modulate the epidermal proliferation and part of the skin immune system, and stimulate the wound healing processes, presumably by non-thermal effects.

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A New Anchor Shot Detection System for News Video Indexing

  • Lee, Han-Sung;Im, Young-Hee;Park, Joo-Young;Park, Dai-Hee
    • Proceedings of the Korean Institute of Intelligent Systems Conference
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    • 2007.11a
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    • pp.217-220
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    • 2007
  • In this paper, we present a new anchor shot detection system which is a core step of the preprocessing process for the news video analysis. The proposed system is composed of four modules and operates sequentially: 1) skin color detection module for reducing the candidate face regions; 2) face detection module for finding the key-frames with a facial data; 3) vector representation module for the key-frame images using a non-negative matrix factorization; 4) anchor shot detection module using a support vector data description. According to our computer experiments, the proposed system shows not only the comparable accuracy to the recent other results, but also more faster detection rate than others.

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THE CONTINUOUS DENSITY FUNCTION OF THE LIMITING SPECTRAL DISTRIBUTION

  • Choi, Sang-Il
    • Journal of applied mathematics & informatics
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    • v.28 no.1_2
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    • pp.515-521
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    • 2010
  • In multivariate analysis, the inversion formula of the Stieltjes transform is used to find the density of a spectral distribution of random matrices of sample covariance type. Let $B_n\;=\;\frac{1}{N}Y_nY_n^TT_n$ where $Y_n\;=\;[Y_{ij}]_{n\;{\times}\;N}$ is with independent, identically distributed entries and $T_n$ is an $n\;{\times}\;n$ symmetric non-negative definite random matrix independent of the $Y_{ij}$'s. In the present paper, using the inversion formula of the Stieltjes transform, we will find that the limiting distribution of $B_n$ has a continuous density function away from zero.

Dimension-Reduced Audio Spectrum Projection Features for Classifying Video Sound Clips

  • Kim, Hyoung-Gook
    • The Journal of the Acoustical Society of Korea
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    • v.25 no.3E
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    • pp.89-94
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    • 2006
  • For audio indexing and targeted search of specific audio or corresponding visual contents, the MPEG-7 standard has adopted a sound classification framework, in which dimension-reduced Audio Spectrum Projection (ASP) features are used to train continuous hidden Markov models (HMMs) for classification of various sounds. The MPEG-7 employs Principal Component Analysis (PCA) or Independent Component Analysis (ICA) for the dimensional reduction. Other well-established techniques include Non-negative Matrix Factorization (NMF), Linear Discriminant Analysis (LDA) and Discrete Cosine Transformation (DCT). In this paper we compare the performance of different dimensional reduction methods with Gaussian mixture models (GMMs) and HMMs in the classifying video sound clips.

Language Model Adaptation Based on Topic Probability of Latent Dirichlet Allocation

  • Jeon, Hyung-Bae;Lee, Soo-Young
    • ETRI Journal
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    • v.38 no.3
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    • pp.487-493
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    • 2016
  • Two new methods are proposed for an unsupervised adaptation of a language model (LM) with a single sentence for automatic transcription tasks. At the training phase, training documents are clustered by a method known as Latent Dirichlet allocation (LDA), and then a domain-specific LM is trained for each cluster. At the test phase, an adapted LM is presented as a linear mixture of the now trained domain-specific LMs. Unlike previous adaptation methods, the proposed methods fully utilize a trained LDA model for the estimation of weight values, which are then to be assigned to the now trained domain-specific LMs; therefore, the clustering and weight-estimation algorithms of the trained LDA model are reliable. For the continuous speech recognition benchmark tests, the proposed methods outperform other unsupervised LM adaptation methods based on latent semantic analysis, non-negative matrix factorization, and LDA with n-gram counting.