• Title/Summary/Keyword: NMD

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Translation initiation mediated by nuclear cap-binding protein complex

  • Ryu, Incheol;Kim, Yoon Ki
    • BMB Reports
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    • v.50 no.4
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    • pp.186-193
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    • 2017
  • In mammals, cap-dependent translation of mRNAs is initiated by two distinct mechanisms: cap-binding complex (CBC; a heterodimer of CBP80 and 20)-dependent translation (CT) and eIF4E-dependent translation (ET). Both translation initiation mechanisms share common features in driving cap- dependent translation; nevertheless, they can be distinguished from each other based on their molecular features and biological roles. CT is largely associated with mRNA surveillance such as nonsense-mediated mRNA decay (NMD), whereas ET is predominantly involved in the bulk of protein synthesis. However, several recent studies have demonstrated that CT and ET have similar roles in protein synthesis and mRNA surveillance. In a subset of mRNAs, CT preferentially drives the cap-dependent translation, as ET does, and ET is responsible for mRNA surveillance, as CT does. In this review, we summarize and compare the molecular features of CT and ET with a focus on the emerging roles of CT in translation.

Science Trends

  • Hyeon, Won-Bok
    • The Science & Technology
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    • no.9 s.412
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    • pp.110-113
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    • 2003
  • 미 물리학회 NMD 한계점 지적/ 미국하원, NSF 예산 증액하기로/ 지하파괴 미니 원자무기에 회의적/ 英 과학자들, GM작물에 신중한 지지/ 독일 과학자, 연구비 조정에 반대/ 스페인, 과학예산 크게 증액/ 유럽연합, 줄기세포에 이견/ 개도국 위한 인터넷(TEK) 서비스

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The Yin and Yang of RNA surveillance in B lymphocytes and antibody-secreting plasma cells

  • Lambert, Jean-Marie;Srour, Nivine;Delpy, Laurent
    • BMB Reports
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    • v.52 no.12
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    • pp.671-678
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    • 2019
  • The random V(D)J recombination process ensures the diversity of the primary immunoglobulin (Ig) repertoire. In two thirds of cases, imprecise recombination between variable (V), diversity (D), and joining (J) segments induces a frameshift in the open reading frame that leads to the appearance of premature termination codons (PTCs). Thus, many B lineage cells harbour biallelic V(D)J-rearrangements of Ig heavy or light chain genes, with a productively-recombined allele encoding the functional Ig chain and a nonproductive allele potentially encoding truncated Ig polypeptides. Since the pattern of Ig gene expression is mostly biallelic, transcription initiated from nonproductive Ig alleles generates considerable amounts of primary transcripts with out-of-frame V(D)J junctions. How RNA surveillance pathways cooperate to control the noise from nonproductive Ig genes will be discussed in this review, focusing on the benefits of nonsense- mediated mRNA decay (NMD) activation during B-cell development and detrimental effects of nonsense-associated altered splicing (NAS) in terminally differentiated plasma cells.

Size Distribution of Droplets Sprayed by an Orchard Sprayer (과수방제기 살포입자의 직경 분포특성)

  • 구영모;신범수;김상헌
    • Journal of Biosystems Engineering
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    • v.26 no.5
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    • pp.431-440
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    • 2001
  • Generated agri-chemical droplets by orchard sprayers are evaporated regenerated and transported along wind streams. The droplets are deposited to targets after changing their sizes, affecting the retention of droplets. An orchard sprayer, designed for spraying grapevines was studied on the spatial distribution of droplet size. The experimental variables were spray direction (0, 22.5, 45, 67.5 and 90˚), distance(2.5, 3.0 and 3.5 m) and fan speed (2,075 and 3,031 rpm). Droplet sizes were converted and analyzed from spray stains, sampled using water sensitive papers. The number median diameter (NMD) increased with an increase of the distance due to disappeared fine droplets (<50 ㎛): however, the volume median diameter (VMD) decreased due to shrunken large droplets (>100 ㎛). Fast fan speed delivered large droplets to 3.5 m, but the spatial distributions of NMD and VMD were not uniform. Slower fan speed decreased the possibility of evaporation and drift; therefore, plenty of droplets were maintained up to 3.0 m. The upward blasting distance was limited within 3 m, but the limit to the ground level was extended to 3.5 m. Concentrated wind and droplets to the ground level should be redistributed to upper canopy direction, leading more uniform deposits. High speed wind and system pressure should be avoided because of generating fine droplets, which would be disappeared and drifted away.

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Uniformity Analysis of Unmanned Aerial Application with Variable Rate Spray System (무인항공 변량방제 시스템의 살포 균일도 분석)

  • Koo, Young Mo;Bae, Yeonghwan
    • Journal of agriculture & life science
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    • v.52 no.6
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    • pp.111-125
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    • 2018
  • In this study, we evaluated the uniformity of deposition rate and particle size distributions of the variable rate application technique using the unmanned rotorcraft by measuring the spray pattern according to path location in the range of spraying flight. The coefficient of variation (CV) of the lateral coverage rate for the overlapped distribution with the spray swath of 3.6 m in both guidance and auto-pilot flight modes maintaining constant flight speed was about 30% and the CV of the coverage rate by the flight path location was extremely small. Therefore, it was assessed that the variable rate application technology compensating for the variation of ground speed was superior in terms of spray uniformity. In addition, the droplet size distributions in both volume median diameter(VMD) and number median diameter(NMD) were adequate for aerial application and uniform in terms of lateral distribution. Thereafter, we intend to contribute to a precise application on small-scaled fields using the unmanned agricultural rotorcraft by the variable rate application.

Isolating and characterizing the unrecorded Wild Yeasts from Seawater and Soil in Haeundae and Mongdol Beaches on the Southern Coast of, Korea (남해안 해운대와 몽돌 해수욕장 주변환경으로부터 야생 효모의 분리 및 국내 미기록 효모들의 균학적 특성)

  • Seon-Jeong Park;Ji-Eun Jang;Jeong-Su Moon;Hyang-Burm Lee;Jong-Soo Lee
    • The Korean Journal of Mycology
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    • v.50 no.1
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    • pp.65-73
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    • 2022
  • This study aimed to isolate wild yeasts from seawaters and soils samples of the Haeundae and Mongdol beaches on the southern coast of Korea, and to characterize these unrecorded wild yeast strains. In total, 41 strains, representing 37 different species of wild yeast were isolated from 70 samples collected from the beaches. Among these, 14 strains were isolated from the alkalophilic medium of yeast extract-peptone-dextrose (YPD) medium (pH 9.0), and 27 strains were isolated concurrently on general YPD medium (pH 6.5). Among the 41 isolated wild yeast strains, Candida insectorum HUD 16-3(JSL-KSS-002) and Metschnikowia citriensis HUD 12-5(JSL-KSS-001) had not previously been recorded. We investigated the microbiological characteristics of these two unrecorded yeast strains and three other strains-, Cystobasidium lysinophilum JSC 52-2(JSL-GGU-019), Candida takata NMD 11-1(JSL-GGU-017) and Candida panamensis ASG 58M-2(JSL-GGU-018) from Jangseoncheon in Jellabuk-do and Jangtaesan in Deajeon city. All five previously unrecorded yeasts were oval and did not form spores. All strains grew well in YPD and yeast extract-malt extract media in a vitamin-free medium. Two strains, including C. insectorum HUD 16-3(JSL-KSS-002) grew well in a 15% NaCl-containing YPD medium. Three strains, including Cys. lysinophilum JSC52-2(JSL-GGU-019) assimilated lactose, and all strains assimilated starch.

A new function of glucocorticoid receptor: regulation of mRNA stability

  • Park, Ok Hyun;Do, Eunjin;Kim, Yoon Ki
    • BMB Reports
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    • v.48 no.7
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    • pp.367-368
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    • 2015
  • It has long been thought that glucocorticoid receptor (GR) functions as a DNA-binding transcription factor in response to its ligand (a glucocorticoid) and thus regulates various cellular and physiological processes. It is also known that GR can bind not only to DNA but also to mRNA; this observation points to the possible role of GR in mRNA metabolism. Recent data revealed a molecular mechanism by which binding of GR to target mRNA elicits rapid mRNA degradation. GR binds to specific RNA sequences regardless of the presence of a ligand. In the presence of a ligand, however, the mRNA-associated GR can recruit PNRC2 and UPF1, both of which are specific factors involved in nonsense-mediated mRNA decay (NMD). PNRC2 then recruits the decapping complex, consequently promoting mRNA degradation. This mode of mRNA decay is termed "GR-mediated mRNA decay" (GMD). Further research demonstrated that GMD plays a critical role in chemotaxis of immune cells by targeting CCL2 mRNA. All these observations provide molecular insights into a previously unappreciated function of GR in posttranscriptional regulation of gene expression. [BMB Reports 2015; 48(7): 367-368]

Analysis of Obesity Intervention Programs in Adolescents: Focused on Endothelium Functions (비만 청소년의 비만 중재 프로그램에 대한 국내외 연구 분석: 혈관내피 기능을 중심으로)

  • Jeon, Hye Kyung;Yoo, Hae Young
    • Journal of Korean Biological Nursing Science
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    • v.21 no.2
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    • pp.99-107
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    • 2019
  • Purpose: The purpose of this study was to determine the current status of obesity intervention programs, and its effects on endothelium function in adolescents. Method: This was a descriptive research study, that investigated domestic and international literature 2009-2018. Using databases inside and outside of Korea to search for 'adolescent', 'obese adolescent', 'exercise', 'program', or 'intervention', and 'endothelium function', a total of 14 literature have been selected for 6 domestic research and 8 international research, excluding overlapping, case studies, literature reviews, and unrelated studies. Results: Interventions for enhancing endothelium function were exercise program, diet, vitamin D3 treatment, and Orlistat intake relative to international research, and combined exercise and purple sweet potato intake, in most domestic research. Dependent variables included FMD, RHI, NMD, EPCs, and EMPs, for measuring endothelium function in international research, and PWV, FMD and RHI, in domestic research. Conclusion: Results of this study confirmed that application of obese intervention programs, may improve endothelium function in adolescents. Further studies are required, to develop nursing intervention, that would enhance endothelium function in adolescents.

Effect of Intracellular Calcium Chelator on Phosphorylation of Spinal N-Methyl-D-Aspartate Receptor following Electroacupuncture Stimulation in Rats (칼슘 저해제가 전침자극에 의한 척수 N-Methyl-D-Aspartate 수용체 인산화에 미치는 영향)

  • Jung, Taek-Guen;Cho, Sung-Woo;Kang, Yeon-Kyeong;Chang, Dong-Ho;Lee, In-Seon
    • Journal of Korean Medicine Rehabilitation
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    • v.20 no.1
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    • pp.27-36
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    • 2010
  • Objectives : We investigated the role of intracellular calcium chelator, bis-(2-aminophenoxy)-ethane-N,N,N',N'-tetraacetic acid(BAPTA), on the modulation of phosphorylation of the spinal N-methyl-D-aspartate receptor(NMDAR) NR1 and NR2B subunits following electroacupuncture(EA). Methods : Bilateral 2 Hz EA stimulation with 1.0 mA was delivered at those acupoints corresponding to Zusanli(ST36) and Sanyinjiao(SP6) in man via needles for 30min. Results : EA analgesia was reduced by intra-peritoneal injection at a higher dose of BAPTA from termination of EA stimulation. At 60 min after EA treatment, the total number of c-fos-immunostained neurons in each regions of the dorsal horn in the $L_{4-5}$ segments was decreased by BAPTA injection, especially in nucleus proprius. The mean integrated optical density (IOD) of NR1 and NR2B subunits were increased only in superficial laminae of EA-treated rats when compared with normal rats. However, the mean IOD of pNR1 was significantly decreased by BAPTA injection in both the superficial laminae and neck region and pNR2B in the superficial laminae. Western blot analyses confirmed the decreased expression of pNR1 and pNR2B. Conclusions : We concluded that intracellular calcium may well play an important role in EA analgesia by modulating the phosphorylation state of spinal NMDAR subunits.

A Study on the Synecological Values of the Torreya nucifera Forest (Natural Monument No. 374) at Pyeongdae-ri in Jeju Island (천연기념물 제374호 제주 평대리 비자나무림의 식물생태학적 가치 제고)

  • Choi, Byoung-Ki;Lee, Chin-Bum
    • Journal of the Korean Institute of Traditional Landscape Architecture
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    • v.33 no.4
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    • pp.87-98
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    • 2015
  • The natural monument forests (no.374) located at Pyeongdae-ri in Jeju island are described and classified by using phytosociological methods and numerical analysis. The purpose of this paper is to identify the ecological character of Torreya nucifera forests between natural habitat and artificial habitat, as well as their spatial and phytogeographical distribution in the Korea. The comparison of forests between Pyeongdae-ri and other regions was analyzed by using a non-metric multidimensional scaling analysis (NMDS) and hierarchical clustering. On the basis of the 12 phytosociological $relev{\acute{e}}s$, the vegetation of T. nucifera dominant forest in Jeju island was arranged in one syntaxon (Alangium platanifolium-Torreya nucifera community included typicum and one subcommunity) within Camellietea. The community of T. nucifera dominant forests were characterized floristically and ecologically. We discussed diagnostic species with references, and proposed a few important diagnostic species (Ilex crenata for. microphylla, Acer palmatum, Zingiber mioga, Mercurialis leiocarpa, Osmorhiza aristata, Mecodium wrightii etc.) to explain condition of the habitat and synecological character. The communities were described by concerning their edaphical and syndynamical niche; we discussed their total distribution in Korea. In most forests they are widespread in Korean peninsular and their distribution is primarily determined by artificial plantation and periodical management. The forests consisted of T. nucifera have developed from natural environment element and artificial management. As a result they have very unique characters with the floristic, structural characterization and distribution. Furthermore, we identified that they need to apposite management for sustainability.