• Tuberculosis and Respiratory Diseases
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• v.49 no.1
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• pp.72-81
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• 2000

Backgrounds : Authors evaluated the quantitative culture of bronchoalveolar lavage fluid(BALF) in patients who were being treated with antimicrobial agents and the characteristics of isolated microorganism. Method : A prospective study was done with 25 patients under mechanical ventilation and antimicrobial treatment in ICU and NCU of Yongdong Severance Hospital from Apr. to Sep. 1999. Patients were classified into two groups: control group (n=5) and patients with VAP (n=20). The threshold of quantitative culture of BAL fluid in the diagnosis of VAP was $10^4$ cfu/ml. Results : 1) In gram staining of BALF, one patient in the control group and four in the VAP group showed positive results. Quantitative culture of BALF showed no organisms in the patients in the control group and in 9 VAP patients. Therefore the overall sensitivity was 43.8%. 2) Frequency of isolated organisms cultured above diagnostic threshold was in the following order: E. cloaclae, S. aureus, K. pneumoniae, and A. baumani. S. aureus and Staphylococcus coagulase(-) were a11 resistant to oxacillin. Seven out of 10 isolated G (-) organisms were suspected to be organisms producing extended spectrum $\beta$-lactamase (ESBL). 3) The concurrence between gram staining of sputum aspiration and that of BALF was only in 1 case. And the concurrence of culture results was observed in 3 cases. Conclusion : The sensitivity of gram staining and quantitative culture of BALF from patients under antibiotic therapy and the concordance rate between conventional tracheal aspiration and BAL were low, facts which were important in interpretation the data. Since the frequency of drug resistance organisms was not different from that of foreign data, antibiotics must be prudently selected and used.

• Tuberculosis and Respiratory Diseases
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• v.79 no.2
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• pp.101-103
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• 2016

Nocardia species are aerobic, gram-positive pathogens found worldwide in soil. Nocardia is considered an opportunistic pathogen, and its infection mostly occurs in immunocompromised patients. We report a case of Nocardia farcinica induced mediastinitis and pneumonia that occurred in a 64-year-old male patient who had no significant medical history except for hypertension. He visited another hospital with a complaint of dyspnea and left chest wall pain. The symptoms arose 7 days ago without any trauma and they worsened. A mediastinal mass was found on computed tomography scan. After being transferred to our hospital for further evaluation, he was diagnosed with mediastinitis and pneumonia. As N. farcinica was found to be the causative organism by 16S rRNA sequencing, proper antibiotic therapy including trimethoprim/sulfamethoxazole was initiated immediately. After this, the patient improved and he was discharged. If an infection has a disseminating course, nocardiosis cannot be excluded even in immunocompetent patients. Once the diagnosis is established, prompt antibiotic therapy should be performed based on the severity.

• Proceedings of the Acoustical Society of Korea Conference
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• spring
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• pp.35-38
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• 2000

본 연구에서는 연속음성인식 시스템의 성능 향상을 위한 기초 연구로서 시스템에 적합한 음향모델과 언어모델을 작성하고 항공편 예약 태스크를 대상으로 인식실험을 실시한 결과 그 유효성을 확인하였다. 이를 위하여 먼저 HMM의 출력확률분포의 mixture와 파라미터의 차원에 대한 정확한 분석을 통한 음향모델을 작성하였다. 또한 반복학습법으로 특정 태스크를 대상으로 N-gram 언어모델을 적용하여 인식 시스템에 적합한 모델을 작성하였다. 인식실험에 있어서는 3인의 화자가 발성한 200문장에 대해 파라미터 차원 및 mixture의 변화에 따른 음향모델과 반복학습에 의해 작성한 언어모델에 대해 multi-pass 탐색 알고리즘을 이용하였다. 그 결과, 25차원에 대한 mixture 수가 9인 음향모델과 10회 반복 학습한 언어모델을 이용한 경우 평균 $81.0\%$의 인식률을 얻었으며, 38차원에 대한 mixture 수가 9인 음향모델과 10회 반복 학습한 언어모델을 이용한 경우 평균 $90.2\%$의 인식률을 보여 인식률 제고를 위해서는 38차원에 대한 mixture 수가 9인 음향모델과 10회 반복학습으로 작성한 언어모델을 이용한 경우가 매우 효과적임을 알 수 있었다.

• Annual Conference on Human and Language Technology
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• 2017.10a
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• pp.143-146
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• 2017

심층학습 모델 중 LSTM-CRF는 개체명 인식, 품사 태깅과 같은 sequence labeling에서 우수한 성능을 보이고 있다. 한국어 개체명 인식에 대해서도 LSTM-CRF 모델을 기본 골격으로 단어, 형태소, 자모음, 품사, 기구축 사전 정보 등 다양한 정보와 외부 자원을 활용하여 성능을 높이는 연구가 진행되고 있다. 그러나 이런 방법은 언어 자원과 성능이 좋은 자연어 처리 모듈(형태소 세그먼트, 품사 태거 등)이 없으면 사용할 수 없다. 본 논문에서는 LSTM-CRF와 최소한의 언어 자원을 사용하여 다국어에 대한 개체명 인식에 대한 성능을 평가한다. LSTM-CRF의 입력은 문자 기반의 n-gram 표상으로, 성능 평가에는 unigram 표상과 bigram 표상을 사용했다. 한국어, 일본어, 중국어에 대해 개체명 인식 성능 평가를 한 결과 한국어의 경우 bigram을 사용했을 때 78.54%의 성능을, 일본어와 중국어는 unigram을 사용했을 때 각 63.2%, 26.65%의 성능을 보였다.

• Biotechnology and Bioprocess Engineering:BBE
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• v.10 no.4
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• pp.322-328
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• 2005

Acylhomoserine lactones (AHLs) are known to be the triggering molecules in the quorum sensing mechanism of many gram-negative bacteria. In order to detect AHL inhibitors that are potential biofilm inhibitors, a convenient and sensitive bioassay was developed based on the $\beta$-galactosidase activity ($\beta$-GAL) of a recombinant Agrobacterium tumefaciens strain. A series of commercially available AHLs were tested for inducing $\beta$-GAL at varying concentrations in agar-plate and liquid cultures of the reporter strain. All AHLs tested exhibited a concentration­dependent induction, and octanoyl homoserine lactone (OHL) showed the highest sensitivity with a detection limit of 0.1 nM in the liquid culture assay. When fimbrolide, a known quorum sensing inhibitor, was added, induction of $\beta$-GAL by OHL was repressed. The repression at a constant OHL concentration was dependent on the fimbrolide concentration with the detection limit below 1 ppm, indicating that this assay is a sensitive method for screening AHL inhibitors.

• Journal of Microbiology and Biotechnology
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• v.18 no.9
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• pp.1496-1499
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• 2008

A Gram-negative, aerobic, rod-shaped, nonspore-forming bacterial strain, designated Gsoil $357^T$ was isolated from soil sample of a ginseng field in Pocheon Province (South Korea). The isolate contained Q-8 as the predominant ubiquinone and iso-$C_{16:0}$, iso-$C_{17:1}$ ${\omega}9c$, and iso-$C_{15:0}$ as the major fatty acids. The G+C content of the genomic DNA was 69.3 mol%. A phylogenetic analysis based on 16S rRNA gene sequences revealed that strain Gsoil $357^T$ was most closely related to Lysobacter gummosus (97.6%) and Lysobacter antibioticus (97.6%). However, the DNA-DNA relatedness value between strain Gsoil $357^T$ and its phylogenetically closest neighbors was less than 17%. On the basis of its phenotypic properties and phylogenetic distinctiveness, strain Gsoil 357T should be classified as representing a novel species in the genus Lysobacter, for which the name Lysobacter ginsengisoli sp. novo is proposed. The type strain is Gsoil $357^T$ (=KCTC $12602^T$=DSM $18420^T$).

• Neonatal Medicine
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• v.16 no.1
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• pp.94-98
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• 2009

Listeria monocytogenes (L. monocytogenes) is a foodborne anaerobic gram-positive rod and the third most common pathogen for neonatal meningitis. Although the mortality and morbidity of L. monocytogenes infections are high, thus causing serious problems in Western populations, neonatal listeriosis is relatively rare in Eastern countries, including Korea. Possible routes for intrauterine infection or vertical transmission of L. monocytogenes include infected placentas and the reproductive tract. Intrauterine infections may cause chorioamnionitis, preterm labor, spontaneous abortion, stillbirth, or neonatal infection. A high index of suspicion and early empirical antibiotic treatment are critical to achieve a favorable prognosis for neonatal listeriosis. We managed a case of L. monocytogenes sepsis and pneumonia in a premature neonate born at 26 weeks of gestational age from an asymptomatic mother with culture-proven placental infection. The neonate was successively treated with ampicillin and gentamicin.

• The Plant Pathology Journal
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• v.22 no.4
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• pp.309-313
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• 2006

Phytophthora blight(PB), caused by Phytophthora drechsleri f. sp. cajani is the third potentially important disease of pigeonpea in the Deccan Plateau(DP) of India after wilt and sterility mosaic. In the rainy-season of 2005, an outbreak of PB was seen throughout DP. To quantify the incidence and spread of the disease, a systematic survey was conducted in the major pigeonpea growing regions of DP during the crop season 2005. Attempts were made to determine the effect of cropping systems on the PB development and identify resistant cultivars, if any, grown by farmers and on research farms. Widespread incidence of PB was recorded on improved, and or local cultivars grown in different intercropping systems. Majority of improved cultivars grown at research farms were found susceptible to PB(>10% disease incidence). Pigeonpea intercropped with groundnut, black gram and coriander had less disease incidence(${\leq}10%$). Three wilt and SM resistant pigeonpea cultivars KPL 96053, ICPL 99044, and ICPL 93179 were found resistant(<10%) to PB as well. However, their resistance to PB needs confirmation under optimum disease development environments.

• Journal of Korean Society of Occupational and Environmental Hygiene
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• v.23 no.2
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• pp.84-94
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• 2013

Objectives: The objective of this study is to identify the composition of dominant microorganisms in waste handling industries. Methods: We collected airborne bacteria and fungi by agar plate impaction method in recyclable waste sorting industry, food recycling industry, landfill and incineration. Isolated dominant microorganisms were identified by VITEK system or morphological analysis. Results: We isolated totally 330 microorganisms in the process and outdoor. Bacillus was the most dominant genus in the all industries, and Sphingomonas, Acinetobacter, Staphylococcus, and Proteus was dominant bacterial genus. The dominant genus of fungi was Penicillium, Aspergillus, and Cladosporium in each industries. Enterobacter, Pseudomonas, Klebsiella, and Proteus was identified as the dominant gram negative bacteria. The ratio of bacteria being biosafety levels(class 1 or 2) was 58.3~77.8%. Conclusions: This study has investigated the dominant microorganisms in the waste handling industries. The genus of dominant microorganisms was similar among the industries but the composition was different. We used biosafety levels as qualitative method, but further studies are needed about specific process of qualitative evaluation methods.

• Journal of Food Hygiene and Safety
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• v.10 no.3
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• pp.175-180
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• 1995

The distribution of bacteria in kimbab and its ingredients have been investigated. The total bacterial counts were over 3$\times$106/g(n=30) when the kimbabs were delivered to restaurant and it exceeded the legal level 1$\times$106/g defined by the Code of Food Standard in 1991. The gram-negative coliforms were also detected 1.9$\times$105. In order to study the cause of bacterial contamination in kimbabs, the ingredients used in kimbabs were examined. The bacterial counts were found 104-108/gfor kim (laver), 104-108/g for sausage, 104-106/g for boiled-spinach, 103-107/g for carrot, and 104-106/g for Danmuji, respectively. From these results it could be concluded that the bacterial contamination in Kimbabs was caused mainly by the ingredients such as kim, boiled-spinach, carrot, and sausage. Therefore, this suggested that the sanitary manufacture of kim, the storage at refrigerator temperature of the ingredients for kimbabs, and the proper treatment of equipments should be maintained in order to reduce the bacterial contamination for kimbabs. Furthermore, it should be required to obtain the basal data for establishment of the sanitary standard of kim and kimbab.