• Title/Summary/Keyword: Multivariate statistical analyses

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Application of Metabolomics to Quality Control of Natural Product Derived Medicines

  • Lee, Kyung-Min;Jeon, Jun-Yeong;Lee, Byeong-Ju;Lee, Hwanhui;Choi, Hyung-Kyoon
    • Biomolecules & Therapeutics
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    • v.25 no.6
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    • pp.559-568
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    • 2017
  • Metabolomics has been used as a powerful tool for the analysis and quality assessment of the natural product (NP)-derived medicines. It is increasingly being used in the quality control and standardization of NP-derived medicines because they are composed of hundreds of natural compounds. The most common techniques that are used in metabolomics consist of NMR, GC-MS, and LC-MS in combination with multivariate statistical analyses including principal components analysis (PCA) and partial least squares-discriminant analysis (PLS-DA). Currently, the quality control of the NP-derived medicines is usually conducted using HPLC and is specified by one or two indicators. To create a superior quality control framework and avoid adulterated drugs, it is necessary to be able to determine and establish standards based on multiple ingredients using metabolic profiling and fingerprinting. Therefore, the application of various analytical tools in the quality control of NP-derived medicines forms the major part of this review. $Veregen^{(R)}$ (Medigene AG, Planegg/Martinsried, Germany), which is the first botanical prescription drug approved by US Food and Drug Administration, is reviewed as an example that will hopefully provide future directions and perspectives on metabolomics technologies available for the quality control of NP-derived medicines.

판별분석을 이용한 토지이용별 토양 특성 변화 연구

  • Go Gyeong-Seok;Kim Jae-Gon;Lee Jin-Su;Kim Tak-Hyeon;Lee Gyu-Ho;Jo Chun-Hui;O In-Suk;Jeong Yeong-Uk
    • Proceedings of the Korean Society of Soil and Groundwater Environment Conference
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    • 2005.04a
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    • pp.237-241
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    • 2005
  • The physical and chemical characteristics of soils in a small watershed were investigated and the effect of geology and land use on soil quality were examined by using multivariate statistical methods, principal components analysis and discriminant analysis. It was considered that the accumulation of salts in the farmland soils indicated by electrical conductivity, contents of cations and anions and pH was caused by fertilizer input during cultivation. The contents of inorganic components are increased as following order: upland > orchard > paddy field > forest. The results of two discriminant analyses using water extractable inorganic components and their ratios by land use were also clearly classified by discriminant function 1 and 2. In discriminant analysis by components, discriminant function 1 indicated the effect of fertilizer application and increased as following order: upland > orchard > paddy field > forest soil.

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Analysis of Factors for Learning Satisfaction Based on Gender in Online Graduate University Settings (원격대학원생의 성별차이에 따른 학습만족요인 분석)

  • Kim, Mid-eum;Lim, Keol
    • Journal of Digital Convergence
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    • v.14 no.4
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    • pp.33-42
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    • 2016
  • This study aimed to understand the differences of the factors for learning satisfaction (learning content, system, interaction, instructor personality, and instructional context) between males and females in online graduate university settings. To examine the research objectives, a total of 88 graduate students attending online universities in Seoul, Korea participated in the survey. Among them, 66 valid responses were used for the analyses using the SPSS 21.0 statistical package. In order to figure out the differences of the factors in gender, Multivariate Analysis of Variance(MANOVA) was conducted with the five dependent factors. As a result, interaction was found to be a significant variable implying that females more actively participated in communication process. Finally, possible reasons for the results were described and suggestions were raised.

Big Data Analysis Using Principal Component Analysis (주성분 분석을 이용한 빅데이터 분석)

  • Lee, Seung-Joo
    • Journal of the Korean Institute of Intelligent Systems
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    • v.25 no.6
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    • pp.592-599
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    • 2015
  • In big data environment, we need new approach for big data analysis, because the characteristics of big data, such as volume, variety, and velocity, can analyze entire data for inferring population. But traditional methods of statistics were focused on small data called random sample extracted from population. So, the classical analyses based on statistics are not suitable to big data analysis. To solve this problem, we propose an approach to efficient big data analysis. In this paper, we consider a big data analysis using principal component analysis, which is popular method in multivariate statistics. To verify the performance of our research, we carry out diverse simulation studies.

Low Serum Albumin Level, Male Sex, and Total Gastrectomy Are Risk Factors of Severe Postoperative Complications in Elderly Gastric Cancer Patients

  • Kang, Sung Chan;Kim, Hyun Il;Kim, Min Gyu
    • Journal of Gastric Cancer
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    • v.16 no.1
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    • pp.43-50
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    • 2016
  • Purpose: It is well known that old age is a risk factor for postoperative complications. Therefore, this study aimed to explore the risk factors for poor postoperative surgical outcomes in elderly gastric cancer patients. Materials and Methods: Between January 2006 and December 2015, 247 elderly gastric cancer patients who underwent curative gastrectomy were reviewed. In this study, an elderly patient was defined as a patient aged ${\geq}65$ years. All possible variables were used to explore the risk factors for poor early surgical outcomes in elderly gastric cancer patients. Results: Based on multivariate analyses of preoperative risk factors, preoperative low serum albumin level (<3.5 g/dl) and male sex showed statistical significance in predicting severe postoperative complications. Additionally, in an analysis of surgery-related risk factors, total gastrectomy was a risk factor for severe postoperative complications. Conclusions: Our study findings suggest that low serum albumin level, male sex, and total gastrectomy could be risk factors of severe postoperative complications in elderly gastric cancer patients. Therefore, surgeons should work carefully in cases of elderly gastric cancer patients with low preoperative serum albumin level and male sex. We believe that efforts should be made to avoid total gastrectomy in elderly gastric cancer patients.

Discovering Relationships between Skin Type and Life Style Using Data Mining Techniques: A Case Study of Korea

  • Kim, Taeheung;Ha, Jihyun;Lee, Jong-Seok;Oh, Younhak;Cho, Yong Ju
    • Industrial Engineering and Management Systems
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    • v.15 no.1
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    • pp.110-121
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    • 2016
  • With the growing interest in skincare and maintenance, there are increasing numbers of studies on the classification of skin type and the factors influencing each type. This study presents a novel methodology by using data mining, for the determination of the relationships between skin type, lifestyle, and patterns of cosmetic utilization. Eight skin-specific factors, which are moisture, sebum in U-zone (both cheeks), sebum in T-zone (forehead, nose, and chin), pore, melanin, wrinkle, acne, hemoglobin, were measured in 1,246 subjects living in South Korea, in conjunction with a questionnaire survey analyzing their lifestyles and pattern of cosmetic utilization. Using various multivariate statistical methods and data mining techniques, we classified the skin types based on the skin-specific values, determined the relationship between skin type and lifestyle, and accordingly sorted the subjects into clusters. Logistic regression analysis revealed gender-related differences in the skin; therefore, separate analyses were performed for males and females. Using the Gaussian Mixture Modeling (GMM) technique, we classified the subjects based on skin type (two male and four female). Using the ANOVA and decision tree techniques, we attempted to characterize the relationship between each skin type and the lifestyles of the subjects. Menstruation, eating habits, stress, and smoking were identified as the major factors affecting the skin.

TGFBI Promoter Methylation is Associated with Poor Prognosis in Lung Adenocarcinoma Patients

  • Seok, Yangki;Lee, Won Kee;Park, Jae Yong;Kim, Dong Sun
    • Molecules and Cells
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    • v.42 no.2
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    • pp.161-165
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    • 2019
  • Non-small cell lung cancer (NSCLC) is the leading cause of cancer-related deaths worldwide and has high rates of metastasis. Transforming growth factor beta-inducible protein (TGFBI) is an extracellular matrix component involved in tumour growth and metastasis. However, the exact role of TGFBI in NSCLC remains controversial. Gene silencing via DNA methylation of the promoter region is common in lung tumorigenesis and could thus be used for the development of molecular biomarkers. We analysed the methylation status of the TGFBI promoter in 138 NSCLC specimens via methylation-specific PCR and evaluated the correlation between TGFBI methylation and patient survival. TGFBI promoter methylation was detected in 25 (18.1%) of the tumours and was demonstrated to be associated with gene silencing. We observed no statistical correlation between TGFBI methylation and clinicopathological characteristics. Univariate and multivariate analyses showed that TGFBI methylation is significantly associated with poor survival outcomes in adenocarcinoma cases (adjusted hazard ratio = 2.88, 95% confidence interval = 1.19-6.99, P = 0.019), but not in squamous cell cases. Our findings suggest that methylation in the TGFBI promoter may be associated with pathogenesis of NSCLC and can be used as a predictive marker for lung adenocarcinoma prognosis. Further large-scale studies are needed to confirm these findings.

Clinical Grading System, Surgical Outcomes and Prognostic Analysis of Cranial Base Chordomas

  • Wang, Benlin;Tian, Fengxuan;Tong, Xiaoguang
    • Journal of Korean Neurosurgical Society
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    • v.65 no.3
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    • pp.469-478
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    • 2022
  • Objective : Cranial base chordomas are rare, but their treatment is challenging. Tumor recurrence is still common despite improvements in microsurgical techniques and postoperative radiotherapy. We retrospectively analyzed the course of treatment, overall survival, and recurrence/progression of chordomas over the past 10 years. Methods : We retrospectively reviewed 50 patients who underwent surgery at Tianjin Huanhu Hospital between 2010 and 2020 and were pathologically diagnosed with chordomas. Tumor resection was performed within the maximum safe range in all patients; the extent of resection was evaluated by imaging; and the incidence of complications, recurrence or progression, and overall survival were assessed. Results : Fifty patients were divided into the low-risk group (LRG) and high-risk group (HRG) based on the cranial chordoma grading system (CCGS). The Karnofsky Performance Scale scores and gross total resection rate of the LRG were significantly higher than those of the HRG (p<0.05). The incidence of complications and mortality in the LRG were lower than those of HRG. The analysis of cumulative survival and cumulative recurrence free survival/progression free survival (RFS/PFS) showed no statistical differences in the extent of resection for survival, recurrence, or progression. Univariate and multivariate analyses showed that Ki-67 was significantly associated with tumor recurrence and was an independent hazard factor (p=0.02). Conclusion : The CCGS can help neurosurgeons anticipate surgical outcomes. Pathological results are important in evaluating the possibility of tumor recurrence, and postoperative radiotherapy improves overall survival and RFS/PFS.

Categorize Debris Flow Hazard Zones in Urban Areas: The Case of Seoul (도시지역 토사재해 위험지역의 유형화: 서울시를 사례로)

  • Park, Changyeol;Shin, Sang Young
    • KSCE Journal of Civil and Environmental Engineering Research
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    • v.36 no.5
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    • pp.915-926
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    • 2016
  • The purpose of this study is to classify debris flow hazard zones in urbanized areas using multivariate statistical analyses and to suggest customized management strategies to each areal type. Using field survey data set in Seoul, 49 sample debris hazard zones are selected. Clustering and discriminant analyses show that debris flow hazard zones are classified into two types. Surrounding land use and land slope are major factors influencing to the categorization. The results suggest that, by considering the characteristics of each areal type, more customized management strategies for debris flow hazard are necessary. Particularly, in addition to traditional structural measures, non-structural measures including land use and development control for downstream built-up areas should be emphasized in urbanized areas to mitigate human and property damages from debris flow hazard more fundamentally.

Restoration of the Broken Lumbopelvic-hip Neuromuscular Chain and Coordinated Synergistic Activation in Low Back Pain

  • Park, Haeun;Park, Chanhee;You, Joshua (Sung) Hyun
    • Physical Therapy Korea
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    • v.29 no.3
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    • pp.215-224
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    • 2022
  • Background: The presence of the lumbopelvic-hip neuromuscular chain is essential for dynamic spinal stabilization; its therapeutic effects on dynamic movements of the distal extremity segment and underpinning motor mechanism remain unknown and warrant further study on participants with low back pain (LBP). Objects: We aim to compare the effects of the broken chain exercise (BCE) and connected chain exercise (CCE) on electromyography (EMG) amplitude and onset time in participants with and without LBP. Methods: Randomized controlled clinical trial. A convenience sample of 40 nonathletic participants (mean age: 24.78 ± 1.70) with and without LBP participated in this study. All participants underwent CCE for 30 minutes, 30-minute daily. We measured EMG amplitude and onset times on bilateral erector spinae (ES), gluteus maximus (GM), hamstring (HAM), transverse abdominis (TrA), internal oblique (IO), and external oblique (EO) during the prone hip extension (PHE) test before and after the BCE and CCE. We used multivariate analysis of variance (MANOVA) to analyze the amplitude and onset time difference between exercises (BCE and CCE) and Pearson's correlations to determine any synergistic relationship among the HAM, GM, bilateral TrA/IO, and ES muscles. The statistical analyses were used at p < 0.05. Results: MANOVA showed that CCE was more decreased on EMG amplitude in HAM and bilateral ES, while increased GM and contralateral TrA/IO than BCE (p < 0.05). MANOVA EMG onset time data analyses revealed that the main effect of the conditions was significant for all HAM, GM, and bilateral ES muscles, whereas the main effect for the group was significant only for GM and contralateral ES in healthy and LBP groups. Pearson's correlation coefficient was computed to assess the relationship between BCE and CCE on dependent variables. In most of the muscles, there was a strong, positive correlation between the two variables, and there was a significant relationship (p < 0.001). Conclusion: CCE produced more effective and coordinated core stabilization and motor control mechanism in the lumbopelvic-hip muscles in participants with and without LBP during PHE than BCE.