• 제목/요약/키워드: Multiple fisheries

검색결과 286건 처리시간 0.024초

Detection of Campylobacter jejuni in food and poultry visors using immunomagnetic separation and microtitre hybridization

  • Simard, Ronald-E.
    • 한국어업기술학회:학술대회논문집
    • /
    • 한국어업기술학회 2000년도 춘계수산관련학회 공동학술대회발표요지집
    • /
    • pp.71-73
    • /
    • 2000
  • Campylobacter jejuni is most frequently identified cause of cause of acute diarrhoeal infections in developeed countries, exceeding rates of illness caused by both salmonella and shigilla(Skirrow, 1990 ; Lior 1994). Previous studies on campylobacter jejuni contamination of commercial broiler carcasses in u.s.(Stern, 1992). Most cases of the disease result from indirect transmission of Campylobactor from animals via milk, water and meat. In addition to Campylobactor jejuni. the closely relates species Campylobactor coli and Campylobactor lari have also been implicated as agents of gastroenteritis in humans. Campylobactor coli represented only approximately 3% of the Campylobactor isolates from patients with Campylobactor enteritis(Griffiths and Park, 1990) whereas Campylobactor coli is mainly isolated from pork(Lmmerding et al., 1988). Campylobactor jejuni has also been isolated from cases of bacteremia, appendicitis and, recently, has been associated with Guillai-Barre syndrome(Allos and Blaser, 1994; von Wulffen et al., 1994; Phillips, 1995). Studies in volunteers indicated that the infectious dose for Campylobactor jejuni is low(about 500 organisms)(Robinson, 1981). The methods traditionally used to detect Campylobactor ssp. in food require at least two days of incubation in an enrichment broth followed by plating and two days of incubation on complex culture media containing many antibiotics(Goossens and Butzler, 1992). Finnaly, several biochemical tests must be done to confirm the indentification at the species level. Therfore, sensitive and specific methods for the detection of small numbers of Campylobactor cells in food are needed. Polymerase chain reaction(PCR) assays targeting specific DNA sequences have been developed for the detection of Campylobactor(Giesendorf and Quint, 1995; Hemandex et al., 1995; Winter and Slavidk, 1995). In most cases, a short enrichment step is needed to enhance the sensitivity of the assay prior to detection by PCR as the number of bacteria in the food products is low in comparison with those found in dinical samples, and because the complex composition of food matrices can hinder the PCR and lower its sensitivity. However, these PCR systems are technically demanding to carry out and cumbersome when processing a large number of samples simutaneously. In this paper, an immunomagnetic method to concentrate Campylobactor cells present in food or clinical samples after an enrichment step is described. To detect specifically the thermophilic Campylobactor. a monoclonal antibody was adsorbed on the surface of the magnetic beads which react against a major porin of 45kDa present on the surface of the cells(Huyer et al., 1986). After this partial purification and concentration step, detection of bound cells was achieved using a simple, inexpensive microtitre plate-based hybridization system. We examined two alternative detection systems, one specific for thermophilic Campylobactor based on the detection of 23S rRNA using an immobilized DNA probe. The second system is less specific but more sensitive because of the high copy number of the rRNA present in bacterial cell($10^3-10^4$). By using specific immunomagnetic beads against thermophilic Campylobactor, it was possible to concentrate these cells from a heterogeneous media and obtain highly specific hybridization reactions with good sensitivity. There are several advantages in using microtitre plates instead of filter membranes or other matrices for hybridization techniques. Microtitre plates are much easier to handle than filter membranes during the adsorption, washing, hybridization and detection steps, and their use faciilitates the simultanuous analysis of multiple sample. Here we report on the use of a very simple detection procedure based on a monoclonal anti-RNA-DNA hybrid antibody(Fliss et al., 1999) for detection of the RNA-DNA hybrids formed in the wells.

  • PDF

Overcoming taxonomic challenges in DNA barcoding for improvement of identification and preservation of clariid catfish species

  • Piangjai Chalermwong;Thitipong Panthum;Pish Wattanadilokcahtkun;Nattakan Ariyaraphong;Thanyapat Thong;Phanitada Srikampa;Worapong Singchat;Syed Farhan Ahmad;Kantika Noito;Ryan Rasoarahona;Artem Lisachov;Hina Ali;Ekaphan Kraichak;Narongrit Muangmai;Satid Chatchaiphan6;Kednapat Sriphairoj;Sittichai Hatachote;Aingorn Chaiyes;Chatchawan Jantasuriyarat;Visarut Chailertlit;Warong Suksavate;Jumaporn Sonongbua;Witsanu Srimai;Sunchai Payungporn;Kyudong Han;Agostinho Antunes;Prapansak Srisapoome;Akihiko Koga;Prateep Duengkae;Yoichi Matsuda;Uthairat Na-Nakorn;Kornsorn Srikulnath
    • Genomics & Informatics
    • /
    • 제21권3호
    • /
    • pp.39.1-39.15
    • /
    • 2023
  • DNA barcoding without assessing reliability and validity causes taxonomic errors of species identification, which is responsible for disruptions of their conservation and aquaculture industry. Although DNA barcoding facilitates molecular identification and phylogenetic analysis of species, its availability in clariid catfish lineage remains uncertain. In this study, DNA barcoding was developed and validated for clariid catfish. 2,970 barcode sequences from mitochondrial cytochrome c oxidase I (COI) and cytochrome b (Cytb) genes and D-loop sequences were analyzed for 37 clariid catfish species. The highest intraspecific nearest neighbor distances were 85.47%, 98.03%, and 89.10% for COI, Cytb, and D-loop sequences, respectively. This suggests that the Cytb gene is the most appropriate for identifying clariid catfish and can serve as a standard region for DNA barcoding. A positive barcoding gap between interspecific and intraspecific sequence divergence was observed in the Cytb dataset but not in the COI and D-loop datasets. Intraspecific variation was typically less than 4.4%, whereas interspecific variation was generally more than 66.9%. However, a species complex was detected in walking catfish and significant intraspecific sequence divergence was observed in North African catfish. These findings suggest the need to focus on developing a DNA barcoding system for classifying clariid catfish properly and to validate its efficacy for a wider range of clariid catfish. With an enriched database of multiple sequences from a target species and its genus, species identification can be more accurate and biodiversity assessment of the species can be facilitated.

Near infrared spectroscopy for classification of apples using K-mean neural network algorism

  • Muramatsu, Masahiro;Takefuji, Yoshiyasu;Kawano, Sumio
    • 한국근적외분광분석학회:학술대회논문집
    • /
    • 한국근적외분광분석학회 2001년도 NIR-2001
    • /
    • pp.1131-1131
    • /
    • 2001
  • To develop a nondestructive quality evaluation technique of fruits, a K-mean algorism is applied to near infrared (NIR) spectroscopy of apples. The K-mean algorism is one of neural network partition methods and the goal is to partition the set of objects O into K disjoint clusters, where K is assumed to be known a priori. The algorism introduced by Macqueen draws an initial partition of the objects at random. It then computes the cluster centroids, assigns objects to the closest of them and iterates until a local minimum is obtained. The advantage of using neural network is that the spectra at the wavelengths having absorptions against chemical bonds including C-H and O-H types can be selected directly as input data. In conventional multiple regression approaches, the first wavelength is selected manually around the absorbance wavelengths as showing a high correlation coefficient between the NIR $2^{nd}$ derivative spectrum and Brix value with a single regression. After that, the second and following wavelengths are selected statistically as the calibration equation shows a high correlation. Therefore, the second and following wavelengths are selected not in a NIR spectroscopic way but in a statistical way. In this research, the spectra at the six wavelengths including 900, 904, 914, 990, 1000 and 1016nm are selected as input data for K-mean analysis. 904nm is selected because the wavelength shows the highest correlation coefficients and is regarded as the absorbance wavelength. The others are selected because they show relatively high correlation coefficients and are revealed as the absorbance wavelengths against the chemical structures by B. G. Osborne. The experiment was performed with two phases. In first phase, a reflectance was acquired using fiber optics. The reflectance was calculated by comparing near infrared energy reflected from a Teflon sphere as a standard reference, and the $2^{nd}$ derivative spectra were used for K-mean analysis. Samples are intact 67 apples which are called Fuji and cultivated in Aomori prefecture in Japan. In second phase, the Brix values were measured with a commercially available refractometer in order to estimate the result of K-mean approach. The result shows a partition of the spectral data sets of 67 samples into eight clusters, and the apples are classified into samples having high Brix value and low Brix value. Consequently, the K-mean analysis realized the classification of apples on the basis of the Brix values.

  • PDF

Dynamic Positioning System의 IMO Class 변경 요건에 관한 연구 (A Study on Dynamic Positioning System IMO class upgrade requirements)

  • 채종주
    • 한국항해항만학회지
    • /
    • 제39권3호
    • /
    • pp.165-172
    • /
    • 2015
  • Dynamic Positioning System(DPS)은 그 신뢰성 및 redundancy(대체) 시스템에 따라 IMO 및 각 선급에서 3개의 class(등급)로 나누고 있다. IMO MSC/Circ 645에 의하면 DPS는 Class 1, 2, 및 3로 나누고 있으며 등급이 높을수록 좀 더 신뢰성 있고 안전하게 DP 선박을 운용할 수 있다. 국내에서 많은 DP Class 선박들이 건조되고 있는 상황에서 DP Class 1선박의 개조를 통해서 DP Class 2로 변경하거나 DP Class 2선박을 신조 또는 중고선으로 구입하는 경우 무엇을 검토하고 확인해야 하는지에 대한 구체적인 실무 자료가 부족하고, DP Class 1선박을 Class 2로 변경하여 다시 매도하는 새로운 산업분야의 개척에 있어 국내 사례를 바탕으로 한 연구가 필요할 것으로 판단된다. 이에 본 연구에서는 DP Class 1선박을 DP Class 2 선박으로 변경하기 위해서는 어떠한 IMO 및 선급의 DP class 요건의 충족이 필요하며 이를 위해서 어떠한 설비의 변경 및 추가가 필요한지를 국내에서 있었던 실제 사례를 통해서 연구해 보았다. DP 선박 Class 변경을 위해서는 FMEA를 통해서 파악되는 DP 선박의 동력 시스템, thruster 시스템 및 제어 시스템 3가지의 주요 시스템에 대체(redundancy)기능을 갖추어야 한다. 동력 시스템은 단일의 발전기, 배전반등에 문제가 발생해도 DP 기능을 유지할 수 있어야 하며, 더불어 PMS기능을 갖추고 있어야 한다. thruster 시스템은 단일의 고장이 발생하더라도 선박의 Surge, Sway 및 Yaw를 남은 thruster 시스템으로 자동 제어 할 수 있어야 한다. 각종 제어 시스템, PRS 및 센서는 여러개를 설치하여 단일의 장비고장에도 DP 기능을 유지 할 수 있어야 한다.

RNG k-𝜖 알고리즘을 이용한 해수취수시스템 분석 (Analysis of Seawater Intake System using the RNG k-𝜖 Algorithm)

  • 김지호;김태원;이승오;박영진
    • 한국산학기술학회논문지
    • /
    • 제14권12호
    • /
    • pp.6447-6454
    • /
    • 2013
  • 기존 해수취수시스템의 경우 해수오염, 부유물질, 취수의 불안정 및 유지관리의 어려움 등으로 인해 해수취수의 어려움이 발생하곤 하였다. 이와 같은 단점을 극복하고자 매설식 해수취수시스템을 개발하여 격포항에 설치하였다. 본 연구에서는 새로운 시스템의 거동을 검토하고자, 수질관측 및 3차원 수치모의 실험을 수행하였다. 이 취수시스템에 대하여 총 5회에 걸쳐 COD, 총질소, 총인, PH 그리고 부유물질에 대하여 수질분석을 수행한 결과, COD, 총질소, 총인, PH의 경우 취수 전 후 저감 효과는 미미하였다. 그러나 부유물질의 경우 수산용수 1급 5 mg/L 이하로 정화되는 효과가 나타났다. 수치모형은 유한체적법 기반의 CFX 모형과 RNG $k-{\epsilon}$ 알고리즘을 선정하였으며, 여과사, 외부관 지름 및 두께를 재현하기 위해서 다공성 알고리즘을 적용하였다. 수치모의 실험을 수행한 결과, 2중관 구조가 내외부관 사이의 공간에 의해 압력의 분포를 균등하게 하여, 흐름 상태나 안정적인 취수측면에서 유리한 것으로 분석되었으며, 취수관을 다열 배치하였을 때 중앙 취수관과 비교하여 양쪽 취수관에서 유량이 0.98배로 감소하였지만 유동의 간섭현상은 발생하지 않았다.

Molecular and Biochemical Characteristics of ${\beta}$-Propeller Phytase from Marine Pseudomonas sp. BS10-3 and Its Potential Application for Animal Feed Additives

  • Nam, Seung-Jeung;Kim, Young-Ok;Ko, Tea-Kyung;Kang, Jin-Ku;Chun, Kwang-Hoon;Auh, Joong-Hyuck;Lee, Chul-Soon;Lee, In-Kyu;Park, Sunghoon;Oh, Byung-Chul
    • Journal of Microbiology and Biotechnology
    • /
    • 제24권10호
    • /
    • pp.1413-1420
    • /
    • 2014
  • Phytate is an antinutritional factor that impacts the bioavailability of essential minerals such as $Ca^{2+}$, $Mg^{2+}$, $Mn^{2+}$, $Zn^{2+}$, and $Fe^{2+}$ by forming insoluble mineral-phytate salts. These insoluble mineral-phytate salts are hydrolyzed rarely by monogastric animals, because they lack the hydrolyzing phytases and thus excrete the majority of them. The ${\beta}$-propeller phytases (BPPs) hydrolyze these insoluble mineral-phytate salts efficiently. In this study, we cloned a novel BPP gene from a marine Pseudomonas sp. This Pseudomonas BPP gene (PsBPP) had low sequence identity with other known phytases and contained an extra internal repeat domain (residues 24-279) and a typical BPP domain (residues 280-634) at the C-terminus. Structure-based sequence alignment suggested that the N-terminal repeat domain did not possess the active-site residues, whereas the C-terminal BPP domain contained multiple calcium-binding sites, which provide a favorable electrostatic environment for substrate binding and catalytic activity. Thus, we overexpressed the BPP domain from Pseudomonas sp. to potentially hydrolyze insoluble mineral-phytate salts. Purified recombinant PsBPP required $Ca^{2+}$ or $Fe^{2+}$ for phytase activity, indicating that PsBPP hydrolyzes insoluble $Fe^{2+}$-phytate or $Ca^{2+}$-phytate salts. The optimal temperature and pH for the hydrolysis of $Ca^{2+}$-phytate by PsBPP were $50^{\circ}C$ and 6.0, respectively. Biochemical and kinetic studies clearly showed that PsBPP efficiently hydrolyzed $Ca^{2+}$-phytate salts and yielded myo-inositol 2,4,6-trisphosphate and three phosphate groups as final products. Finally, we showed that PsBPP was highly effective for hydrolyzing rice bran with high phytate content. Taken together, our results suggest that PsBPP has great potential in the animal feed industry for reducing phytates.

능동형 피난유도기기와 실시간 피난경로생성 기술을 적용한 여객선 스마트 인명대피 시스템 (Smart Escape Support System for Passenger Ship : Active Dynamic Signage & Real-time Escape Routing)

  • 최장원;양찬수
    • 한국항해항만학회:학술대회논문집
    • /
    • 한국항해항만학회 2017년도 추계학술대회
    • /
    • pp.79-85
    • /
    • 2017
  • 여객선 위험상황 발생 시, 선장 및 승무원들이 신속하고 정확하게 대피안내를 하였는지 여부는 매우 중요하다. 그렇지 못할 경우 세월호 사고와 같이 엄청난 참사를 유발할 수 있기 때문이다. 선장의 대피 의사결정이 지연되고 대피 상황에서 승객들을 안내할 승무원들도 부족한 상황에서 수많은 희생자가 발생한 것은 어쩌면 당연한 결과라고 볼 수 밖에 없다. 여객선 설계 단계에서 구조적, 물리적으로 비상 대피 경로를 반영하고는 있지만, 실제 대피 상황에서 많은 수의 승객들에게 올바른 대피 안내를 제공하는 것은 여전히 간단한 문제가 아니다. 승객들은 공포심에 당황하여 잘못된 방향으로 대피할 수도 있고, 혼잡한 대피상황은 더욱 상황을 악화시킨다. 승무원들도 당황할 수 있는 실제 위험 상황에서 기존의 피난 유도등이나 피난 유도선, 그리고 소수의 훈련 받은 승무원들만으로는 많은 수의 승객을 효과적으로 대피시키기 어려운 현실이다. 여객선 스마트 인명대피 시스템은 2016년부터 4개년 해양수산부 연구개발 과제로 개발 중에 있으며, 대피 경로상의 주요 지점에 설치되는 다수의 능동형 피난유도 장치, 사물인터넷 무선통신기술 LoRa, 실시간 대피경로를 생성 서버, 시각화 관제소프트웨어 등으로 구성된다.

  • PDF

Testosterone 처리에 의한 넙치, Paralichthys olivaceus 난소에서 doublesex-and mab-3-related transcription factor-1 (DMRT-1) mRNA의 발현 유도 (Induced Expression of Doublesex-and mab-3-related Transcription Factor-1 (DMRT-1) mRNA by Testosterone in the Olive Flounder, Paralichthys olivaceus ovary)

  • 조필규;안광욱;김나나;최용기;조성환;민병화;임한규;최철영
    • 한국양식학회지
    • /
    • 제20권3호
    • /
    • pp.199-202
    • /
    • 2007
  • 본 연구에서는 넙치(Paralichthys olivaceus) 정소로부터 DMRT-1 partial cDNA를 분리하였다. 넙치 DMRT-1은 317개의 염기로 구성되어 있으며, Atlantic halibut, 감성돔 및 무지개 송어와 각각 94%, 85%, 82%의 높은 상동성을 보였다. RT-PCR을 이용하여 DMRT-1 mRNA 발현은 난소보다 정소에서 높게 나타난 것을 관찰할 수 있었다. 또한, 암컷 넙치에 웅성호르몬인 testosterone 처리시 처리 농도에 따라 난소에서 DMRT-1 mRNA 발현이 증가함을 볼 수 있었다. 따라서, DMRT-1은 수컷에서 특이적으로 발현되는 유전자임을 알 수 있으며, 본 연구의 결과는 넙치의 성 전환 및 유도에 대한 기초자료를 제공할 것이다.

자연산 암컷 참조기, Larimichthys polyactis의 생식년주기 (Annual Reproductive Cycle of Wild Female Yellow Croaker, Larimichthys polyactis)

  • 강덕영;조기채;이진호;강희웅;김효찬;김규희
    • 한국양식학회지
    • /
    • 제19권3호
    • /
    • pp.188-196
    • /
    • 2006
  • 한국산 참조기 암컷의 연중 생식주기를 조사하기 위해, 2004년 2월부터 2005년 2월까지 계절에 따라 추자도, 영광 및 목포에서 포획된 자연산 암컷 참조기, Larimichthys polyactis을 조직학적으로 조사하였다. 참조기의 난소는 좌우비대칭의 낭상형으로 복강 배측(背側)후방부에 위치하며, 복강의 가장자리 뒤끝 부위에서 합일되어 뇨관과 연결되어 비뇨생식공으로 개구되어 있는 형태였다. 생체지수의 경우, 비만도(CF)와 간중량지수(HSI)는 생식선 발달과 특별한 상관관계가 없었으나, 대신 내장중량지수(VSI)는 역상관 관계, 생식소중량지수(GSI)는 정상관 관계를 나타내었다. 한편 생식세포 월별 변화의 조사를 통해 참조기는 수온이 낮아지기 시작하는 9월부터 생식소내 난원세포가 난모세포로 발달하기 시작하여 1차 성장기를 나타내고, 10월$\sim$12월에 2차 성장기를 보냈다. 다음해 1월$\sim$4월에 난소는 본격적으로 성숙을 시작하여, 5월에 최종 성숙, 배란 및 산란 단계를 나타내었다. 이후 6월까지 참조기는 왕성한 산란 시기에 머물러 있었으며, 7월에 이르러 산란 후 잔존 난모세포를 퇴화, 흡수시키고 8월에 이르러 휴지기에 접어들었다. 이때 생식세포발달 양식은 난군동기발달형이며, 산란형은 봄-여름 산란형인 것을 알 수 있었다.

Comparison of genome-wide association and genomic prediction methods for milk production traits in Korean Holstein cattle

  • Lee, SeokHyun;Dang, ChangGwon;Choy, YunHo;Do, ChangHee;Cho, Kwanghyun;Kim, Jongjoo;Kim, Yousam;Lee, Jungjae
    • Asian-Australasian Journal of Animal Sciences
    • /
    • 제32권7호
    • /
    • pp.913-921
    • /
    • 2019
  • Objective: The objectives of this study were to compare identified informative regions through two genome-wide association study (GWAS) approaches and determine the accuracy and bias of the direct genomic value (DGV) for milk production traits in Korean Holstein cattle, using two genomic prediction approaches: single-step genomic best linear unbiased prediction (ss-GBLUP) and Bayesian Bayes-B. Methods: Records on production traits such as adjusted 305-day milk (MY305), fat (FY305), and protein (PY305) yields were collected from 265,271 first parity cows. After quality control, 50,765 single-nucleotide polymorphic genotypes were available for analysis. In GWAS for ss-GBLUP (ssGWAS) and Bayes-B (BayesGWAS), the proportion of genetic variance for each 1-Mb genomic window was calculated and used to identify informative genomic regions. Accuracy of the DGV was estimated by a five-fold cross-validation with random clustering. As a measure of accuracy for DGV, we also assessed the correlation between DGV and deregressed-estimated breeding value (DEBV). The bias of DGV for each method was obtained by determining regression coefficients. Results: A total of nine and five significant windows (1 Mb) were identified for MY305 using ssGWAS and BayesGWAS, respectively. Using ssGWAS and BayesGWAS, we also detected multiple significant regions for FY305 (12 and 7) and PY305 (14 and 2), respectively. Both single-step DGV and Bayes DGV also showed somewhat moderate accuracy ranges for MY305 (0.32 to 0.34), FY305 (0.37 to 0.39), and PY305 (0.35 to 0.36) traits, respectively. The mean biases of DGVs determined using the single-step and Bayesian methods were $1.50{\pm}0.21$ and $1.18{\pm}0.26$ for MY305, $1.75{\pm}0.33$ and $1.14{\pm}0.20$ for FY305, and $1.59{\pm}0.20$ and $1.14{\pm}0.15$ for PY305, respectively. Conclusion: From the bias perspective, we believe that genomic selection based on the application of Bayesian approaches would be more suitable than application of ss-GBLUP in Korean Holstein populations.