• Title/Summary/Keyword: Multi-species

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Development of Ultra-Rapid Multiplex PCR Detection against 6 Major Pathogens in Honeybee (꿀벌 6종 주요 병원체에 대한 초고속 다중 PCR 검출법의 개발)

  • Lim, Su-Jin;Kim, Jung-Min;Lee, Chil-Woo;Yoon, Byoung-Su
    • Journal of Apiculture
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    • v.32 no.1
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    • pp.27-39
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    • 2017
  • PCR-chip-based ultra-rapid multiplex PCRs for detection of six major infectious pathogens in honeybee were developed. The 6 kinds of major infectious pathogens in honeybee included Paenibacillus larvae causing American Foulbrood, Melissococcus plutonius causing European Foulbrood as bacteria, Ascosphaera apis (Chalkbrood), Aspergillus flavus (Stonebrood), Nosema apis and Nosema ceranae (Nosemosis) as fungi. The developed PCR-chip-based ultra-rapid multiplex PCR showed successful amplification for all six major pathogens in the presence of more than $10^3$ molecules. The time for confirming amplification (Threshold cycles; Ct-time) was about 7 minutes for two species, and about 9 minutes for four species. Total 40 cycles of PCR took 11 minutes 42 seconds and time for melting point analysis was 1 minute 15 seconds. Total time for whole PCR detection was estimated 12 minutes 57 seconds (40 cycles of PCR and melting point analysis). PCR-chip based ultra-rapid multiplex PCR using standard DNA substrates showed close to 100% accuracy and no false-amplification was found with honeybee genomic DNA. Ultra-rapid multiplex PCR is expected to be a fast and efficient pathogen detection method not only in the laboratory but also in the apiary field.

Evaluation on Watershed Natural Habitat Assessment for Conservation of Brachymystax lenok tsinlingensis in Naerin Upstream (내린천 상류 유역 열목어(Brachymystax lenok tslingensis) 서식지 자연성 평가)

  • Jeong Eun Kim;Hwang Goo Lee
    • Ecology and Resilient Infrastructure
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    • v.10 no.3
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    • pp.73-84
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    • 2023
  • The objective of this study was to evaluate biodiversity and natural habitat environment of freshwater ecosystem. Our aim was therefore to produce a set of biodiversity and habitat indicators based on multi-parameters of water quality and biodiversity by analyzing the characteristics of the results by indicators. We selected four indicators a) anthropogenic disturbance, b) habitat diversity, c) biodiversity, d) ecosystem structure. The fishes cohabiting with Brachymystax lenok tsinlingensis were Rhynchocypris kumgangensis and Zacco koreanus. As a result of the anthropogenic disturbance evaluation, it was analyzed that vegetation embankment showed a more stable environment in the tributary than the main stream, and other disturbance was not confirmed As a result of the habitat diversity evaluation, it was analyzed that habitat evaluation index showed a high score of 200 more on average, showing an optimal habitat condition. As a result of the biodiversity evaluation, it was analyzed as a clean habitat condition with a high proportion of sensitive species, abundant dissolved oxygen, and little pollutants. As a results of the ecosystem structure, the ecological health condition metrics and appearance of endangered species showed large score deviation, but it was analyzed that the stream ecosystem health was generally excellent. There was a slight correlation between the habitat environment and the results of the nature habitat evaluation according to the appearance of the B. lenok tsinlingensis.

Game Theory Based Co-Evolutionary Algorithm (GCEA) (게임 이론에 기반한 공진화 알고리즘)

  • Sim, Kwee-Bo;Kim, Ji-Youn;Lee, Dong-Wook
    • Journal of the Korean Institute of Intelligent Systems
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    • v.14 no.3
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    • pp.253-261
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    • 2004
  • Game theory is mathematical analysis developed to study involved in making decisions. In 1928, Von Neumann proved that every two-person, zero-sum game with finitely many pure strategies for each player is deterministic. As well, in the early 50's, Nash presented another concept as the basis for a generalization of Von Neumann's theorem. Another central achievement of game theory is the introduction of evolutionary game theory, by which agents can play optimal strategies in the absence of rationality. Not the rationality but through the process of Darwinian selection, a population of agents can evolve to an Evolutionary Stable Strategy (ESS) introduced by Maynard Smith. Keeping pace with these game theoretical studies, the first computer simulation of co-evolution was tried out by Hillis in 1991. Moreover, Kauffman proposed NK model to analyze co-evolutionary dynamics between different species. He showed how co-evolutionary phenomenon reaches static states and that these states are Nash equilibrium or ESS introduced in game theory. Since the studies about co-evolutionary phenomenon were started, however many other researchers have developed co-evolutionary algorithms, in this paper we propose Game theory based Co-Evolutionary Algorithm (GCEA) and confirm that this algorithm can be a solution of evolutionary problems by searching the ESS.To evaluate newly designed GCEA approach, we solve several test Multi-objective Optimization Problems (MOPs). From the results of these evaluations, we confirm that evolutionary game can be embodied by co-evolutionary algorithm and analyze optimization performance of GCEA by comparing experimental results using GCEA with the results using other evolutionary optimization algorithms.

Nitrogen Conversion Factors and in vitro Protein Digestibility of some Seaweeds (수종해조의 단백계수와 in vitro Digestibility)

  • Ryu Hong-Soo;SATTERLEE Lowell D.;LEE Kang-Ho
    • Korean Journal of Fisheries and Aquatic Sciences
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    • v.15 no.4
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    • pp.263-270
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    • 1982
  • In an attempt to evaluate the nutritional quality of seaweed protein, the effects of heat treatment on the in vitro digestibility and trypsin inhibitor content in seaweed were determined. In this study, the nitrogen-to-protein conversion factors were also calculated on the basis of quantitative amino acid data. The results are as follows : 1. The in vitro protein digestbilty of red seaweeds (P. teoera anc P. suborbiculata) were ranged from 78.5 to 82.2, and green seawerd (E. linza) and brown seaweeds showed value under 80 in vitro digestibility. In general, trypsin inhibitor contents in brown seaweed were higher (0.33-0.54 mg/g) than those of red seaweeds (0.26-0.39 mg/g). And it is noted that the lowest trypsin inhibitor content was shown in green seaweed (E. linza) in spite of lowest in spite digestibility (78.5). 2. The in vitro protein digestibility of sun dried laver (P. tenera) was increased with cooling time (microwave heating), but it was not significant. Hot plate cooking raised the in vitro digestibility from 81. 1 to 84.5. The influence pot cooking time on trypsin inhibitor content was inversely proportional to in vitro digestibility. 3. Computed nitrogen factor, based on amino acid content (Factor method) and Kjeldahl nitrogen content (Kjeldahl mettled), were 5.83 (H. fusiforme)- 6.52 (P. tencra) as Factor method and 5.40 (U. pinnatifida)-6.29 (P. tenera) as Kjeldahl method. Individual value for each nitrogen conversion factor differed by species, especially in brown seaweeds. The best estimate of the protein content of seaweed can be calculated, from multiplying the summed amino acid content by conversion factor (Factor method).

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Effects of Ventilation Condition on the Fire Characteristics in Compartment Fires (Part II: Multi-dimensional Fire Dynamics) (구획화재에서 환기조건의 변화가 화재특성에 미치는 영향 (Part II: 다차원 화재거동))

  • Kim, Jong-Hyun;Ko, Gwon-Hyun;Park, Chung-Hwa;Hwang, Cheol-Hong
    • Fire Science and Engineering
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    • v.24 no.5
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    • pp.32-38
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    • 2010
  • Multi-dimensional fire dynamics were studied numerically with the change in ventilation conditions in a full-scale ISO 9705 room. Fire Dynamic Simulator (FDS) was used for the identical conditions conducted in previous experiments. Flow rate and doorway width were changed to create over-ventilated fire (OVF) and under-ventilated fire (UVF). From the numerical simulation, it was found that the internal flow pattern rotated in the opposite direction for the UVF relative to the OVF so that a portion of products recirculated to the inside of compartment. Significant change in flow pattern with ventilation conditions may affect changes in the complex process of CO and soot formation inside the compartment due to increase in the residence time of high-temperature products. The fire behavior in the UVF created complex 3D characteristics of species distribution as well as thermal and flow structures. In particular, additional burning near the side wall inside the compartment significantly affected the flow pattern and CO production. The distribution of CO inside the compartment was explained with 3D $O_2$ distribution and flow patterns. It was observed that gas sampling at local positions in the upper layer were insufficient to completely characterize the internal structure of the compartment fire.

Effect of Priming and Seed Pellet Technique for Improved Germination and Growth in Fraxinus rhynchophylla and Alnus sibirica (프라이밍 및 종자펠렛 제조를 통한 물푸레나무와 물오리나무의 발아율 향상 및 생장증대 효과)

  • Park, Hae Il;Shim, Hoon Seob;Choi, Li Na;Jo, Hyeon Gil;Han, Seung Ho;Lee, Jae Geun;Yu, Chang Yeon;Lim, Jung Dae
    • Korean Journal of Medicinal Crop Science
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    • v.21 no.1
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    • pp.7-19
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    • 2013
  • This study was carried out to select new pelleting binder and material for seeds from Fraxinus rhynchophylla Hance and Alnus sibirica Fisch. ex Turcz. The optimum treatments of the various concentrations and species of priming agents to improve seed germination of both woody medicinal plants were also estimated. Germinability was increased when the seeds of Fraxinus rhynchophylla Hance was soaked in -1.0 MPa of PEG6000 solution at $15^{\circ}C$ for 4 days significantly, the optimum treatment for improving germination of Alnus sibirica Fisch. ex Turcz was observed when the tested seeds was soaked in 100 mM of KCl at $15^{\circ}C$ for 4 days. The influence of physical and chemical properties of pelleting solid materials, the mixture of gypsum, diatomaceous earth, dalma ceramic and vermicuolite (6:1:1:1 ratio) were found as the best pelleting materials for Fraxinus rhynchophylla Hance and Alnus sibirica Fisch. ex Turcz. seeds. To satisfy the requirements of absorption and compatibility for multi-layer seed pelleting, SGPA (Starch-grafted cross-linked polyacrylates) hydrogel was prepared using starch, acrylonitrile, ceric ammonium nitrate, nitric acid, methyl alcohol and potassium hydroxide. The resulting SGPA hydrogel showed high water absorption but not plant compatibility. It suggested that seed pelleting using pelleting materials and SGPA hydrogel (multi-layer coating) after priming agent treatment is to increase germinability and seedling growth and it can reduced irrigation labours and can also save seed.

Conventional Fluid Dynamics and CFD Modeling for the Systematic Analysis of the Inside Flow of the Fischer-Tropsch Packed Bed Reactor (전통적인 유체역학 방법론과 CFD 결합을 통한 Fischer-Tropsch 고정층 반응기 내부 흐름의 체계적 모델링)

  • Kim, Hyunseung;Cho, Jaehoon;Hong, Gi Hoon;Moon, Dong Ju;Shin, Dongil
    • Journal of the Korean Institute of Gas
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    • v.20 no.4
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    • pp.65-77
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    • 2016
  • Modeling for complex reacting flow in Fischer-Tropsch reactor is one of the challenges in the field of Computational Fluid Dynamics (CFD). It is hard to derive each and every reaction rate for all chemical species because Fisher-Tropsch reaction produces many kinds of hydrocarbons which include lots of isomers. To overcome this problem, after analyzing the existing methodologies for reaction rate modeling, non-Anderson-Schulz-Flory methodology is selected to model the detailed reaction rates. In addition, the inside flow has feature of multi-phase flow, and the methodologies for modeling multi-phase flow depend on the interference between the phases, distribution of the dispersed phase, flow pattern, etc. However, existing studies have used a variety of inside flow modeling methodologies with no basis or rationale for the feasibility. Modeling inside flow based on the experimental observation of the flow would be the best way, however, with limited resources we infer the probable regime of inside flow based on conventional fluid dynamics theory; select the appropriate methodology of Mixture model; and perform systematic CFD modeling. The model presented in this study is validated through comparisons between experimental data and simulation results for 10 experimental conditions.

Optimal Forest Management for Improving Economic and Public Functions in Mt.Gari Leading Forest Management Zone (가리산 선도산림경영단지의 경제적·공익적 기능 증진을 위한 산림관리 최적화 방안)

  • Kim, Dayoung;Han, Hee;Chung, Joosang
    • Journal of Korean Society of Forest Science
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    • v.110 no.4
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    • pp.665-677
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    • 2021
  • This study analyzed the optimization method of forest management to enhance economic and public functions, as well as the interrelationship among timber production, carbon storage, and water conservation functions in Mt.Gari leading forest management zone. For these purposes, a forest management planning model was developed using Multi-Objective Linear Programming. The model had an objective function to maximize the total NPV (Net Present Value) of weighted timber production, carbon storage, water conservation, and constraints to limit the rate of change in timber production, percentage of each age-class and tree species area, percentage of conifers and broad-leaved trees area in each management zone, minimum timber production and timber sales amount. Based on the description of forest inventory and the comprehensive plan of Mt.Gari, we analyzed stand information and management constraints of the study area. We compared management alternatives using different weights in the objective function. Therefore, the total NPV was maximized in the alternative considering the three functions in equal proportion, rather than the alternatives of maximizing only one function. When all three functions were considered simultaneously, timber production offset the carbon storage and water conservation, and carbon storage and water conservation interacted synergistically. However, when considering only two of the three functions, all combinations of functions demonstrated tradeoffs with one other. Therefore, we discovered that by considering all three functions equally, rather than only one or two functions, the economic and public values of the study area can be maximized.

Vegetation and Water Characteristics of an Eco-technological Water Purifying Biotope in Yongin (용인시에 위치한 생태공학적 수질정화 비오톱의 식생 및 수환경 특성)

  • Nam, Bo Eun;Kim, Jae Geun;Hong, Mun Gi
    • Journal of Wetlands Research
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    • v.20 no.4
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    • pp.432-445
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    • 2018
  • Vegetation and water characteristics of an eco-technological water purifying biotope were investigated at five years after the wetland construction. A total of 91 vascular plant species in 36 families were recorded. Initially planted emergent macrophytes such as Phragmites australis, P. japonicus, Zizania latifolia, Typha latifolia, and T. angustifolia mainly comprised the vegetational components of the wetland. The effect of water purification was observed markedly in most indicators such as electric conductivity (P < 0.01), $NO_3-N$ (P < 0.05), $NH_4-N$ (P < 0.001), $K^+$ (P < 0.05), $Na^+$ (P < 0.01), and $Mg^{2+}$ (P < 0.01). In particular, $NO_3-N$ and $NH_4-N$ concentrations decreased to about 60% and 30%, respectively, via the purification process of the wetland. Separativeness and curvature from the meandering structure of 15 units (multi-cell wetland system) seemed likely to make the wetland continuously play a role as an eco-technological water purifying biotope. We recommend that eco-technological design factors should be included in wetland constructions for efficient and continuous functioning, thus enhancing ecological values of wetlands.

A Study of Evaluating Streetscape Green Environments to Improve Urban Street Green Spaces - A Case Study of Jeonju City - (도시가로녹지의 개선을 위한 녹화환경평가 연구 -전주시를 대상으로-)

  • Jeong, Moon-Sun;Lim, Hyun-Jeong
    • Journal of the Korean Society of Environmental Restoration Technology
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    • v.22 no.3
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    • pp.55-71
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    • 2019
  • The purpose of this study is to propose an evaluation method to assess green environments of streetscapes to improve urban street green spaces in Jeonju City. Through a rapid assessment of urban street green spaces, we suggest an objective basis for expanding street green space as well as for adopting sustainable maintenance and improvement measures. We choose 12 sections of streetscapes (roads and sidewalks) to investigate existing street conditions which have more than four lanes and function as major road axes. Six large roads and six medium roads of Jeonju City center area are investigated as pilot assessment study sites. Site inventory checklists consist of environmental characteristics of streetscape, street tree status, and planting condition evaluation. Environmental characteristics of streetscapes are composed of physical and neighborhood factors. For instance, items for physical factors are types and width of road/sidewalks, paving materials, tree protection materials, and green strip. And surrounding landuse is a neighborhood factor. Assessment items for street tree status are street plant names (tree/shrubs/ground cover), size, and planting intervals. Planting condition evaluation items are tree shape, damage, canopy density, and planting types with existence of adjacent green space. Evaluation results are classified into three levels such as A(maintain or repair), B(greening enhancement), and C(structural improvement). In case of grade A, streetscapes have enough sidewalk width for maintaining green strip and a multi-layered planting(in large road only) with fairly good growing conditions of street trees. For grade B and C, streetscapes have a moderate level of sidewalk width with a single street tree planting. In addition, street tree growing conditions are appeared poor so that green enhancement or maintenance measures are needed. For median, only grade B and C are found as its planting growing foundations are very limited in space. As a result, acquiring enough sidewalk space is essential to enhance ecological quality of urban street green. Especially, it is necessary to have green strip with reasonable widths for plant growing conditions in sidewalks. In addition, we need to consider native species with multi-layer plant compositions while designing street green.