• 제목/요약/키워드: Molecular scale

검색결과 638건 처리시간 0.033초

Application of Scale-Up Criterion of Constant Oxygen Mass Transfer Coefficient ($k_La$) for Production of Itaconic Acid in a 50 L Pilot-Scale Fermentor by Fungal Cells of Aspergillus terreus

  • Shin, Woo-Shik;Lee, Dohoon;Kim, Sangyong;Jeong, Yong-Seob;Chun, Gie-Taek
    • Journal of Microbiology and Biotechnology
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    • 제23권10호
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    • pp.1445-1453
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    • 2013
  • The scale-up criterion of constant oxygen mass transfer coefficient ($k_La$) was applied for the production of itaconic acid (IA) in a 50 L pilot-scale fermentor by the fungal cells of Aspergillus terreus. Various operating conditions were examined to collect as many $k_La$ data as possible by adjusting the stirring speed and aeration rate in both 5 L and 50 L fermentor systems. In the fermentations performed with the 5 L fermentor, the highest IA production was obtained under the operating conditions of 200 rpm and 1.5 vvm. Accordingly, we intended to find out parallel agitation and aeration rates in the 50 L fermentor system, under which the $k_La$ value measured was almost identical to that ($0.02sec^{-1}$) of the 5 L system. The conditions of 180 rpm and 0.5 vvm in the 50 L system turned out to be optimal for providing almost the same volumetric amount of dissolved oxygen (DO) into the fermentor, without causing shear damage to the producing cells due to excessive agitation. Practically identical fermentation physiologies were observed in both fermentations performed under those respective operating conditions, as demonstrated by nearly the same values of volumetric ($Q_p$) and specific ($q_p$) IA production rates, IA production yield ($Y_{p/s}$), and specific growth rate (${\mu}$). Specifically, the negligible difference of the specific growth rate (${\mu}$) between the two cultures (i.e., $0.029h^{-1}$ vs. $0.031h^{-1}$) was notable, considering the fact that ${\mu}$ normally has a significant influence on $q_p$ in the biosynthesis of secondary metabolites such as itaconic acid.

Large scale purification and characterization of recombinant human autotaxin/lysophospholipase D from mammalian cells

  • Song, Yuanda;Dilger, Emily;Bell, Jessica;Barton, William A.;Fang, Xianjun
    • BMB Reports
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    • 제43권8호
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    • pp.541-546
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    • 2010
  • We utilized a mammalian expression system to purify and characterize autotaxin (ATX)/lysophospholipase D, an enzyme present in the blood responsible for biosynthesis of lysophosphatidic acid. The human ATX cDNA encoding amino acids 29-915 was cloned downstream of a secretion signal of CD5. At the carboxyl terminus was a thrombin cleavage site followed by the constant domain (Fc) of IgG to facilitate protein purification. The ATX-Fc fusion protein was expressed in HEK293 cells and isolated from conditioned medium of a stable clone by affinity chromatography with Protein A sepharose followed by cleavage with thrombin. The untagged ATX protein was further purified to essential homogeneity by gel filtration chromatography with a yield of approximately 5 mg/liter medium. The purified ATX protein was enzymatically active and biologically functional, offering a useful tool for further biological and structural studies of this important enzyme.

Differences between N-PDFs derived from Continuum and Molecular Emission Toward the Orion A Molecular Cloud

  • Lee, Yong-Hee;Lee, Jeong-Eun;Yun, Hyeong-Sik;Kim, Jongsoo;Choi, Yunhee;Mairs, Steve;Johnstone, Doug
    • 천문학회보
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    • 제43권1호
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    • pp.66.2-66.2
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    • 2018
  • The probability distribution function of column density (N-PDF) has been used for studying the characteristics of molecular clouds. In particular, the properties of N-PDF can reveal the nature of turbulence and gravity inside the molecular cloud. We use the dust continuum emission at $450{\mu}m$ and $850{\mu}m$ observed as part of the JCMT Gould Belt Survey (GBS) (Mairs et al. 2016), the 12CO J=1-0 line observed with the 45 m telescope at Nobeyama Radio Observatory (NRO) (Shimajiri et al. 2011), 13CO, C18O and HCO+ J=1-0 observed with the 13.7 m telescope at Taeduk Radio Astronomy Observatory (TRAO), as part of the TRAO key science project, "mapping Turbulent properties In star-forming MolEcular clouds down to the Sonic scale" (TIMES; PI: Jeong-Eun Lee). We here present the N-PDFs derived from the continuum and the molecular line emission toward the Orion A molecular cloud and compare their behaviors in order to investigate the chemical and optical depth effects on the N-PDF.

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나노구조기판의 형상 및 온도변화에 따른 액체 클러스터의 거동에 대한 분자동역학적 연구 (Molecular Dynamics Study on Behaviors of Liquid Cluster with Shape and Temperature of Nano-Structure Substrate)

  • 고선미;정흥철;;최경민;김덕줄
    • 한국분무공학회지
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    • 제13권1호
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    • pp.34-41
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    • 2008
  • Molecular dynamic simulations have been carried out to study the effect of the nano-structure substrate and its temperature on cluster laminating. The interaction between substrate molecules and liquid molecules was modeled in the molecular scale and simulated by the molecular dynamics method in order to understand behaviors of the liquid cluster on nano-structure substrate. In the present model, the Lennard-Jones potential is applied to mono-atomic molecules of argon as liquid and platinum as nano-structure substrate to perform simulations of molecular dynamics. The effect of wettability on a substrate was investigated for the various beta of Lennard-Jones potential. The behavior of the liquid cluster and nano-structure substrate depends on interface wettability and function of molecules force, such as attraction and repulsion, in the collision progress. Furthermore, nano-structure substrate temperature and beta of Lennard-Jones potential have effect on the accumulation ratio. These results of simulation will be the foundation of coating application technology for micro fabrication manufacturing.

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주사형 맥스웰 응력 현미경을 이용한 박막의 Nanometer-scale 이미지 (Nanometer-scale Imaging in Thin Films by Scanning Maxwell-stress Microscopy)

  • 신훈규;유승엽;권영수
    • 한국전기전자재료학회:학술대회논문집
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    • 한국전기전자재료학회 1998년도 추계학술대회 논문집
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    • pp.133-136
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    • 1998
  • The scanning Maxwell-stress microscopy (SMM) is a dynamic noncontact electric force microscopy that allows simultaneous access to the electrical properties of molecular system such as surface potential, surface charge, dielectric constant and conductivity along with the topography. Here we report our recent results of its application to nanoscopic study of domain structures and electrical functionality in organic thin films prepared by the Langmuir-Blodgett technique.

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Current- voltage (I-V) Characteristics of the Molecular Electronic Devices using Various Organic Molecules

  • Koo, Ja-Ryong;Pyo, Sang-Woo;Kim, Jun-Ho;Kim, Jung-Soo;Gong, Doo-Won;Kim, Young-Kwan
    • Transactions on Electrical and Electronic Materials
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    • 제6권4호
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    • pp.154-158
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    • 2005
  • Organic molecules have many properties that make them attractive for electronic applications. We have been examining the progress of memory cell by using molecular-scale switch to give an example of the application using both nano scale components and Si-technology. In this study, molecular electronic devices were fabricated with amino style derivatives as redox-active component. This molecule is amphiphilic to allow monolayer formation by the Langmuir-Blodgett (LB) method and then this LB monolayer is inserted between two metal electrodes. According to the current-voltage (I-V) characteristics, it was found that the devices show remarkable hysteresis behavior and can be used as memory devices at ambient conditions, when aluminum oxide layer was existed on bottom electrode. The diode-like characteristics were measured only, when Pt layer was existed as bottom electrode. It was also found that this metal layer interacts with organic molecules and acts as a protecting layer, when thin Ti layer was inserted between the organic molecular layer and Al top electrode. These electrical properties of the devices may be applicable to active components for the memory and/or logic gates in the future.

흡착공정 개발을 위한 다중규모 모사: 활성탄에서의 n-Hexane 흡착에 관한 사례연구 (Multiscale Simulation for Adsorption Process Development: A Case Study of n-Hexane Adsorption on Activated Carbon)

  • 손혜정;임영일;유경선
    • Korean Chemical Engineering Research
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    • 제46권6호
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    • pp.1087-1094
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    • 2008
  • 본 연구는 활성탄을 사용한 n-hexane의 흡착공정에 있어서 분자수준에서 시작하여 공정단계에 이르는 다중규모 모사에 관하여 기술한다. 분자모사에서는 GCMC(Grand Canonical Monte Carlo) 방법을 이용하여 활성탄에서 n-hexane의 등온흡착식을 예측하고, 2차원 전산유체역학(CFD; Computational fluid dynamics) 모사를 통하여 흡착컬럼 내 유체흐름에 대한 수력학적 특성을 파악한다. 공정모사단계에서는 분자모사 및 유체역학 모사에서 각각 얻은 등온흡착식과 축방향 확산계수값을 이용하여 n-hexane의 용출곡선을 얻는다. 이러한 3단계 다중규모 모사기법을 활용하여 얻은 공정모사 결과는 펄스응답의 실험결과와 비교해볼 때, 온도와 유량변화에 따른 1차 모멘트(평균 체류시간)에 관하여 약 20% 미만의 오차범위에서 일치함을 확인할 수 있다. 이 결과로부터 분자수준에서 시작하는 다중규모 모사는 필요한 실험횟수를 줄이면서 흡착공정 개발을 가속화할 수 있는 가능성을 보여준다.

계산 그리드에서 워크플로우 기반의 사용자 환경 설계 및 구현 (Design and Implementation of Workflow-based User Environment on Computational Grid)

  • 황선태;심규호
    • 한국컴퓨터정보학회논문지
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    • 제10권4호
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    • pp.165-171
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    • 2005
  • 고속의 컴퓨터, 대용량 저장장치, 초고속 네트워크는 현재 우리가 쉽게 접근할 수 있는 컴퓨팅 인프라이다. 하지만 분자 시뮬레이션과 같은 자연과학 및 응용과학 분야에의 시뮬레이션에서는 여전히 더 많은 컴퓨팅 파워, 더 커다란 저장장치를 필요로 한다. 이러한 요구는 그리드 컴퓨팅(1)이라는 차세대 분산 컴퓨팅 환경을 우리에게 제시하였다. 하지만 현재까지 제안된 그리드 컴퓨팅 기술은 통신 인터페이스와 프로토콜 등의 글로버스 툴킷(2, 3)과 같은 미들웨어 수준에 대한 연구만이 중심이 되고 있다. 이러한 환경은 응용 플랫폼에 대한 연구의 부족과 어플리케이션의 부족을 가져왔으며, 그 결과 사용자는 그리드 컴퓨팅 기술에 대한 이용을 미비하게 만들었다. 따라서 본 연구에서는 분자 시뮬레이션 그리드 (MGrid: Molecular Simulation Grid System) 에서 적용을 목적으로 고효율(High Throughput)의 시뮬레이션 실험을 위한 사용자 환경(User Environment)을 정의하고, 사용자에게 친근한 추상화된 작업 모델을 제안함으로써 보다 효율적이고 안정적인 그리드 자원 이용을 가능하게 한다.(4, 5)

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TIMES: mapping Turbulent properties In star-forming MolEcular clouds down to the Sonic scale. I. the first result.

  • Yun, Hyeong-Sik;Lee, Jeong-Eun;Choi, Yunhee;Evans, Neal J. II;Offner, Stella S.R.;Lee, Yong-Hee;Baek, Giseon;Choi, Minho;Kang, Hyunwoo;Lee, Seokho;Tatematsu, Ken'ichi;Heyer, Mark H.;Gaches, Brandt A.L.;Yang, Yao-Lun;Jung, Jae Hoon;Lee, Changhoon
    • 천문학회보
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    • 제44권1호
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    • pp.42.2-42.2
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    • 2019
  • Turbulence is one of the natural phenomena in molecular clouds. It affects gas density and velocity fluctuation within the molecular clouds and controls the mode and tempo of star formation. However, despite many years of study, the properties of turbulence remain poorly understood. As part of the Taeduk Radio Astronomy Observatory (TRAO) Key Science Program (KSP), "mapping Turbulent properties In star-forming MolEcular clouds down to the Sonic scale (TIMES; PI: Jeong-Eun Lee)", we have fully mapped two star-forming molecular clouds, the Orion A and the Ophiuchus molecular clouds, in 3 sets of lines ($^{13}CO$ J=1-0, $C^{18}O$ J=1-0, HCN J=1-0, $HCO^+$ J=1-0, CS J=2-1, and $N_2H^+$ J=1-0) using the TRAO 14-m telescope. We apply a statistical analysis, Principal Component Analysis (PCA), which can recover an underlying turbulent-power spectrum from an observed P-P-V spectral map. We compare turbulence properties not only between the two clouds, but also between different parts within each cloud. We present the first result of our observation program.

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