• Title/Summary/Keyword: Molecular mapping

검색결과 295건 처리시간 0.025초

생물학적 패턴의 건축적 적용에 관한 연구 (A Study on the Architectural Application of Biological Patterns)

  • 김원갑
    • 한국실내디자인학회논문집
    • /
    • 제21권2호
    • /
    • pp.35-45
    • /
    • 2012
  • The development of digital media made the change of architectural paradigm from tectonic to the surface and pattern. This means the transition to the new kind of materiality and the resurrection of ornament. This study started as an aim to apply biological pattern to architectural design from the new perception of pattern. Architectural patterns in the early era appeared as ladders, steps, chains, trees, vortices. But since 21st century, we can find patterns in nature like atoms and molecular structures, fluid forms of dynamics and new geometrical pattern like fractal and first of all biological patterns like viruses and micro-organisms, Voronoi cells, DNA structure, rhizomes and various hybrids and permutations of these. Pattern became one of the most important elements and themes of contemporary architecture through the change of materiality and resurrection of ornament with the new perception of surface in architecture. One of the patterns that give new creative availability to the architectural design is biological pattern which is self-organized as an optimum form through interaction with environment. Biological patterns emerge mostly as self-replicating patterns through morphogenesis, certain geometrical patterns(in particular triangles, pentagons, hexagons and spirals). The architectural application methods of biological patterns are direct figural pattern of organism, circle pattern, polygon pattern, energy-material control pattern, differentiation pattern, parametric pattern, growth principle pattern, evolutionary ecologic pattern. These patterns can be utilized as practical architectural patterns through the use of computer programs as morphogenetic programs like L-system, MoSS program and genetic algorithm programs like Grasshoper, Generative Components with the help of computing technology like mapping and scripting.

  • PDF

도라지 수집종의 형태적 특성과 SSR마커에 의한 유연관계 분석 (Morphological Characteristics and Genetic Diversity Analysis of Platycodon grandiflorum (Jacq.) A. DC Determined Using SSR Markers)

  • 엄유리;이이;;이대영;이재원;김금숙;김창국;홍창표;김옥태
    • 한국약용작물학회지
    • /
    • 제24권1호
    • /
    • pp.55-61
    • /
    • 2016
  • Background : Plant breeding requires the collection of genetically diverse genetic resources. Studies on the characteristics of Platycodon grandiflorum resources have not been carried out so far. The present study was carried out to discriminate P. grandiflorum based on morphological characteristics and genetic diversity using simple sequence repeat (SSR) markers. Methods and Results :We collected 11 P. grandiflorum cultivars: Maries II, Hakone double white, Hakone double blue, Fuji white, Fuji pink, Fuji blue, Astra white, Astra pink, Astra blue, Astra semi-double blue and Jangbaek. Analyses of the morphological characteristics of the collection were conducted for aerial parts (flower, stem and leaf) and underground parts (root). Next, the genetic diversity of all P. grandiflorum resources was analyzed using SSR markers employing the DNA fragment analysis method. We determined that the 11 P. grandiflorum cultivars analyzed could be classified by plant length, leaf number and root characteristic. Based on the genetic diversity analysis, these cultivars were classified into four distinct groups. Conclusions : These findings could be used for further research on cultivar development using molecular breeding techniques and for conservation of the genetic diversity of P. grandiflorum. Moreover, the markers could be used for genetic mapping of the plant and marker-assisted selection for crop breeding.

Chemical Differentiation of $C^{34}S$ and $N_2H^+$ in Dense Starless Cores

  • Kim, Shinyoung;Lee, Chang Won;Sohn, Jungjoo;Kim, Gwanjeong;Kim, Mi-Ryang
    • 천문학회보
    • /
    • 제39권2호
    • /
    • pp.75.2-75.2
    • /
    • 2014
  • CS molecule as an important tracer for studying inward motions in dense cores is known to be adsorbed onto dusts in cold (T~10K) dense cores, resulting in its significant depletion in the central region of the cores which may hamper a proper study of kinematics stage of star formation. In this study we choose five 'evolved' dense starless cores, L1544, L1552, L1689B, L694-2 and L1197, to investigate how depletion of CS molecule is significant and how the molecule differentiates depending on the evolutional status of the dense cores, by using a rare isotopomer C34S. We performed mapping observations in C34S (J=2-1) and N2H+ (J=1-0) with Nobeyama 45 m telescope, and compared $850{\mu}m$ continuum data as a reference of the density distribution of the dense cores. Our data confirm the claim that CS molecule generally depletes out in the central region in dense starless cores, while N2H+ keeps abundant as they get evolved. All of integrated intensity maps show 'semi-ring-like' depletion holes in CS, and all of abundance radial profiles show decrease toward center. The CS depletion and molecular chemical differentiation seems to depend on the evolutional status in dense cores. The evolved cores shows low abundance at both central and outer regions, implying that in the case of highly evolved cores CS freeze-out occurs over the most area of the cores.

  • PDF

Survey for CO Outflow Activities in 68 VeLLOs

  • Kim, Gwanjeong;Lee, Chang Won;Kim, Mi-Ryang;Soam, Archana;Kazuhiro, Kiyokane;Saito, Masao
    • 천문학회보
    • /
    • 제41권2호
    • /
    • pp.47.1-47.1
    • /
    • 2016
  • We present a preliminary result of search for CO molecular outflows toward a sample of 68 candidate Very Low Luminosity Objects (VeLLOs; Lint ${\leq}0.1L_{\odot}$) to help to understand their physical properties. The sources have been identified using the data at IR to radio wavelengths by M. Kim et al. 2016 toward nearby star-forming regions in the Gould belt. These sources were observed in rotational transitions 2-1 and 3-2 of $^{12}CO$, $^{13}CO$, and $C^{18}O$ molecules with SRAO, CSO, JCMT, and ASTE telescopes. In the beginning of our survey we made a single pointing observation in $^{12}CO$ 2-1 or 3-2 lines for our sample, identifying 53 sources as potential outflow candidates from their line wing features. We made full or partial mapping observations for these candidates with the same lines, finding 33 sources with bipolar or one-sided outflow features. Out of these 33 sources, 6 VeLLOs are previously known sources to have their outflows and 27 VeLLOs are found to be new outflow sources identified from this study. We estimated outflow properties with corrections for excitation temperature, optical depth, and inclination. Their outflow forces range from $8.7{\times}10^{-10}$ to $6.0{\times}10^{-5}M_{\odot}\;km\;s^{-1}yr^{-1}$ with a median value of $3.6{\times}10^{-7}M_{\odot}\;km\;s^{-1}yr^{-1}$, indicating that most of the VeLLOs are less powerful than those for protostars. Their accretion luminosities vary from $9.7{\times}10^{-9}$ to $166L_{\odot}$ with a median value of $0.004L_{\odot}$, implying that most VeLLOs have larger ratios of the accretion luminosity to the internal luminosity but a significant number of VeLLOs have smaller ratios. This result suggests that many of the VeLLOs can be explained with episodic accretion but a significant number of VeLLOs cannot.

  • PDF

Three-Dimensional Structure of Star-Forming Regions in NGC 6822 Hubble V

  • Lee, Hye-In;Oh, Heeyoung;Le, Huynh Anh N.;Pak, Soojong;Lee, Sungho;Mace, Gregory;Jaffe, Daniel T.;Nguyen-Luong, Quang;Tatematsu, Ken'ichi
    • 천문학회보
    • /
    • 제42권2호
    • /
    • pp.43.3-43.3
    • /
    • 2017
  • NGC 6822 is a dwarf irregular galaxy in the Local Group and it is located in 500 kpc, further than the Large Magellanic Cloud and the Small Magellanic Cloud. Therefore, we can study star-forming processes by local condition in NGC 6822 instead of tidal force of the Galactic gravitational field. Hubble V is the brightest of several H II complexes in this galaxy. We observed Hubble V by using IGRINS attached on the 2.7 m telescope at the McDonald Observatory in Texas, US in May 2016. We performed a spectral mapping of $15^{{\prime}{\prime}}{\times} 7^{{\prime}{\prime}}$area on H and K bands, and detected emission lines of bright $Br{\gamma}\;{\lambda}2.1661{\mu}m$ and weak He I ${\lambda}2.0587{\mu}m$. Molecular hydrogen lines of 1-0S(1) ${\lambda}2.1218{\mu}m$, 2-1 S(1) ${\lambda}2.2477{\mu}m$, and 1-0 S(0) ${\lambda}2.2227{\mu}m$ was also detected. These emission lines show the structure of an ionized core and excited surface of clouds by far-ultraviolet photons, photodissociation region (PDR). We present three-dimensional maps of emission line distributions through multi slit scanning data and compare these results with the previous study. This presentation shows the physical structure of the star-forming regions and we discuss a PDR model and an evolution of Hubble V complex.

  • PDF

Identification of Amino Acid Residues Involved in Feedback Inhibition of the Anthranilate Synthase in Escherichia coli

  • Kwak, Joon-Hyeok;Hong, Kwang-Won;Lee, Sung-Haeng;Hong, Jin-Han;Lee, Se-Yong
    • BMB Reports
    • /
    • 제32권1호
    • /
    • pp.20-24
    • /
    • 1999
  • The first step of the branch pathway in tryptophan biosynthesis is catalyzed by anthranilate synthase, which is subjected to feedback inhibition by the end product of the pathway. The $trpE^{FBR}$ gene from a mutant Escherichia coli strain coding for anthranilate synthase that was insensitive to feedback inhibition by tryptophan has been cloned. To identify the amino acid changes involved in the feedback regulation of anthranilate synthase, the nucleotide sequence of the mutant $trpE^{FBR}$ gene was determined. Sequence analysis of the $trpE^{FBR}$ gene revealed that four bases were changed in the structural gene while alteration was not found in the 5' control region. Among these base changes, only two base substitutions caused the alterations in amino acid sequences. From the results of restriction fragment exchange mapping, the 61st nucleotide, C to A substitution, that changed $Pro^{21}{\rightarrow}Ser$ was identified as the cause of the desensitization to feedback inhibition by tryptophan. Additional feedback-resistant enzymes of the E. coli anthranilate synthases were constructed by site-directed mutagenesis to examine the effect of the $Ser^{40}\;{\rightarrow}\;Arg^{40}$ change found in the $trpE^{FBR}$ gene of Brevibacterium lactofermentum. From the feedback inhibition analysis, the $Pro^{21}{\rightarrow}Ser$ and $Ser^{40}{\rightarrow}Arg$ mutants maintained about 50% and 90% of their maximal activities, respectively, even at the extreme concentration of 10 mM tryptophan. From these results, we suggest that the $Pro^{21}$ and $Ser^{40}$ residues are involved in the tryptophan binding in the E. coli enzyme.

  • PDF

Molecular and Circulatory Expression of Insulin Growth Factors in Indian Females with Advanced Cervical Cancer

  • Sharma, Manoj;Satyam, Abhigyan;Abhishek, Ashu;Khan, Rehan;Rajappa, Medha;Sharma, Alpana
    • Asian Pacific Journal of Cancer Prevention
    • /
    • 제13권12호
    • /
    • pp.6475-6479
    • /
    • 2012
  • Background: Recent studies have demonstrated an association between insulin growth factor (IGF) and insulin growth factor binding protein-3 (IGFBP-III) serum levels and increased risk for various cancers. However, little information is available on clinical implications of the IGF system in Indian patients with cervical cancer. This study explored associations by analyzing their expression profiles in cervical cancer cases. Materials and Methods: Totals of 50 patients with advanced cervical cancer and 40 healthy controls were enrolled. Human papillomavirus (HPV) and cervical biopsy sample were obtained from all participating women. Circulatory levels were estimated by ELISA and the tissue expression was assessed using RT-PCR and Western blotting. Results: Levels of IGF-I and II showed significant increase whereas IGFBP-III showed significant decline in all patients as compared to controls. Spearman correlation analysis between IGFs and HPV status showed significant correlations. Conclusions: We demonstrated elevated circulating levels and tissue expression of IGF-I and IGF-II in advancer cancer cervix patients, as compared with controls, with a converse trend being apparent for IGFBP-III. In future, associations of the IGF system and clinical outcome of cervical cancer patients in post treatment samples might point to significance in disease mapping as a prognostic marker after validation with a larger patient series.

Minimizing a QTL region for intramuscular fat content by characterizing the porcine Phosphodiesterase 4B (PDE4B) gene

  • Kim, Jae-Hwan;Ovilo, Cristina;Park, Eung-Woo;Fernndez, Almudena;Lee, Jun-Heon;Jeon, Jin-Tae;Lee, Jung-Gyu
    • BMB Reports
    • /
    • 제41권6호
    • /
    • pp.466-471
    • /
    • 2008
  • Three isoforms of pig PDE4B were cloned and classified as two forms: PDE4B1 and PDE4B3, which contain UCR1 and UCR2; and PDE4B2, which contains only UCR2. The amino acid sequences of each isoform showed good conservation in human and rat. PDE4B2 is expressed in a wide range of tissues, but PDE4B1 and PDE4B3 are not. Using an informative SNP for the Iberian x Landrace intercross detected from intron 12, a linkage map was constructed. The location of PDE4B was estimated at 123.6 cM outside of the QTL-CI (124-128 cM) for IMF. However, the QTL-CI for IMF was reconfirmed with high significance, and its position was narrowed down to an interval of 4 cM (the region defined by markers PDE4B and SW1881). Using radiation hybrid mapping, LEPR, LEPROT, DNAJC6, AK3L1 and AK3L2 were selected as positional and/or functional candidates related to the QTL.

Complex Segregation Analysis of Categorical Traits in Farm Animals: Comparison of Linear and Threshold Models

  • Kadarmideen, Haja N.;Ilahi, H.
    • Asian-Australasian Journal of Animal Sciences
    • /
    • 제18권8호
    • /
    • pp.1088-1097
    • /
    • 2005
  • Main objectives of this study were to investigate accuracy, bias and power of linear and threshold model segregation analysis methods for detection of major genes in categorical traits in farm animals. Maximum Likelihood Linear Model (MLLM), Bayesian Linear Model (BALM) and Bayesian Threshold Model (BATM) were applied to simulated data on normal, categorical and binary scales as well as to disease data in pigs. Simulated data on the underlying normally distributed liability (NDL) were used to create categorical and binary data. MLLM method was applied to data on all scales (Normal, categorical and binary) and BATM method was developed and applied only to binary data. The MLLM analyses underestimated parameters for binary as well as categorical traits compared to normal traits; with the bias being very severe for binary traits. The accuracy of major gene and polygene parameter estimates was also very low for binary data compared with those for categorical data; the later gave results similar to normal data. When disease incidence (on binary scale) is close to 50%, segregation analysis has more accuracy and lesser bias, compared to diseases with rare incidences. NDL data were always better than categorical data. Under the MLLM method, the test statistics for categorical and binary data were consistently unusually very high (while the opposite is expected due to loss of information in categorical data), indicating high false discovery rates of major genes if linear models are applied to categorical traits. With Bayesian segregation analysis, 95% highest probability density regions of major gene variances were checked if they included the value of zero (boundary parameter); by nature of this difference between likelihood and Bayesian approaches, the Bayesian methods are likely to be more reliable for categorical data. The BATM segregation analysis of binary data also showed a significant advantage over MLLM in terms of higher accuracy. Based on the results, threshold models are recommended when the trait distributions are discontinuous. Further, segregation analysis could be used in an initial scan of the data for evidence of major genes before embarking on molecular genome mapping.

Molecular Characterization of Salmonella Genomic Island 1 in Proteus mirabilis Isolates from Chungcheong Province, Korea

  • Sung, Ji Youn;Kim, Semi;Kwon, GyeCheol;Koo, Sun Hoe
    • Journal of Microbiology and Biotechnology
    • /
    • 제27권11호
    • /
    • pp.2052-2059
    • /
    • 2017
  • The emergence and dissemination of Salmonella genomic island 1 (SGI1) are strongly associated with the occurrence of multidrug-resistant (MDR) enterobacteria in humans and animals. Diverse SGI1s have been reported among Salmonella enterica and Proteus mirabilis in several countries. We aimed to characterize SGI1 in P. mirabilis isolates from humans and chickens in Chungcheong Province, Korea. A total of 44 P. mirabilis isolates were recovered from humans (n = 20) and chickens (n = 24). Antimicrobial susceptibility was determined by disk diffusion assay. To detect and characterize SGI1s, PCR amplification and PCR mapping experiments were performed. Repetitive extragenic palindromic-PCR (REP-PCR) was performed to assess the clonality of the isolates. The four P. mirabilis strains (16.7%) from chicken harbored a SGI1, whereas none of the isolates from clinical specimens contained SGI1. The SGI1s detected in our study were all confirmed as SGI1-PmABB harboring aminoglycoside-resistant genes (aacCA5 and aadA7). In P. mirabilis isolates, the presence of SGI1-PmABB was significantly correlated with high resistance rates of the isolates to antimicrobial agents, such as gentamicin, streptomycin, and spectinomycin. Moreover, the four SGI1-bearing isolates showed the same REP-PCR patterns and that suggested both horizontal and clonal spread of the isolates. This study is the first attempt to determine SGI1s in P. mirabilis isolates in Korea. We confirmed that P. mirabilis isolates carrying SGI1-PmABB were distributed at poultry farms in Korea. The present study emphasizes the need for continuous monitoring of SGI1s to prevent spreading of the MDR genomic islands among P. mirabilis isolates from humans and animals.