• Journal of Plant Biotechnology
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• 제45권3호
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• pp.183-189
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• 2018

The plant hormone auxin regulates the overall metabolic processes essential for plant growth and development. Auxin signaling is mediated by early auxin response genes, which are classified into three major families: AUXIN/INDOLE ACETIC ACID (AUX/IAA), GRETCHEN HAGEN3 (GH3) and SMALL AUIN UP RNA (SAUR). The SAUR gene family is the largest family among early auxin response genes and encodes the small and highly unstable gene products. The functional roles of SAUR genes have remained unclear for many years. The traditional genetic and molecular studies on the SAUR functions have been hampered by their likely genetic redundancy and tandem arrays of highly related genes in the plant genome, together with the molecular characteristics of SAUR. However, recent studies have suggested possible roles of SAUR in a variety of tissues and developmental stages in accordance with the novel approaches such as gain-of-function and RNA silencing techniques. In this review, the recent research progress on the functional roles and regulatory mechanisms of SAUR and a set of possible future works are discussed.

• 대한임상검사과학회지
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• 제50권2호
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• pp.110-117
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• 2018

본 연구에서는 2017년 6월부터 7월까지 국내 충남 소재 2차 의료기관의 임상검체에서 분리 된 20개 균주와 ICU환경으로부터 분리 한 4개를 포함해 총 24개의 MRSA 균주에 대한 분자유전학적 특성을 분석하기 위해 SCCmec typing과 mec complex typing을 수행하였다. 임상검체에서 분리된 MRSA 20균주의 SCCmec typing 분석 결과 SCCmec type II가 8건, type IVa가 1건, Not-typeable이 11건으로 나타났다. 의료기관 중환자실 환경에서 분리 된 MRSA 중 한 균주는 mecA 유전자를 가지고 있지 않은 것으로 확인되었으며, 나머지 세 균주는 SCCmec type II, III, IVa가 각각 한 건으로 나타났다. 임상검체와 중환자실 환경검체에서 분리된 MRSA는 SCCmec typing 결과 그 기원이 서로 다른 것으로 나타났으나, 의료기관 환경에서 분리된 1건의 경우 그 기원이 서로 일치하여 의료종사자의 손, 가운 등을 매개체로 하여 환경내의 MRSA가 환자에게 전파되었을 가능성이 있는 것으로 사료된다. 이후 추가적인 연구를 통해 좀 더 많은 수의 병원감염 관련 균주를 대상으로 추적조사를 실시 한다면 임상 현장에 감염관리와 관련한 더욱 유용한 정보를 제공할 수 있을 것으로 사료된다.

• Journal of Microbiology and Biotechnology
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• 제4권4호
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• pp.322-326
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• 1994

Bacillus thuringiensis strain BT-14 was isolated from alfalfa dust in Korea. The strain BT-14 produced one bipyramidal crystal and one spore in the cell. The biochemical characteristics of the strain BT-14 were similar to those of Bacillus thuringiensis subsp. kurstaki HD-l. Examination of its antibiotic resistance revealed that while the strain BT-14 was less resistant than BTK HD-l to ampicillin, gentamycin, neomycin and tobramycin, it was more resistant to amikacin than BTK HD-l. The $\delta$-endotoxin crystal of strain BT-14 consisted of a single protein with a high molecular weight of ca 135 KD on a 10% SDS-PACE. The strain BT-14 contained at least nine different plasmids with sizes of 2.9, 5.3, 5.8, 6.2, 9.4, 15.1, 18.1, 23.1 and 79 Kb. In insect bioassay, the isolated strain BT-14 showed lethality of 67% against Plutella xylostella larvae at dilution of 5$\times$$l0^{-4}$ (5$\times$l0 to 3$\times$$l0^2$ spores/ml), which is, almost equivalent to that of BTK HD-l.

• BMB Reports
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• 제46권1호
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• pp.41-46
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• 2013

Identifying genes indispensable for an organism's life and their characteristics is one of the central questions in current biological research, and hence it would be helpful to develop computational approaches towards the prediction of essential genes. The performance of a predictor is usually measured by the area under the receiver operating characteristic curve (AUC). We propose a novel method by implementing genetic algorithms to maximize the partial AUC that is restricted to a specific interval of lower false positive rate (FPR), the region relevant to follow-up experimental validation. Our predictor uses various features based on sequence information, protein-protein interaction network topology, and gene expression profiles. A feature selection wrapper was developed to alleviate the over-fitting problem and to weigh each feature's relevance to prediction. We evaluated our method using the proteome of budding yeast. Our implementation of genetic algorithms maximizing the partial AUC below 0.05 or 0.10 of FPR outperformed other popular classification methods.

• 미생물학회지
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• 제38권1호
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• pp.19-25
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• 2002

Colletotrichum spp.는 광범위한 기주범위를 갖는 다범성균으로 각종작물에 피해를주는 중요한식물병원진균이다. 최근 국내에서 널리 재배되고 있는 단감, 사과, 복숭아, 포도 등에 탄저병 이 발생하여 많은 경제적 손실을 초래하고 있다. 탄저병원균의 경우 기존에는 주로 형태적 특징이나 배지 상에서의 특성, 기주에 대한 병원성의 차이에 의존하여 분류를 해 왔다. 그러나 최근에는 병원균의 분류에 있어 문제점을 해결하기 위하여 분자생물학적 방법을 이용하고 있다. 이에 본 실험에서는 Random Amplified Polymorphism DNAs (RAPD)와 Ploymerase Chain Reaction-Restriction Fragment Length Polymorphism (PCR-RFLP) 기법을 이용하여 단감나무에 탄저병을 일으키는 균들 간에 유연관계를 밝혔다. 유연관계 분석결과 크게는2개의 그룹으로 나뉘었고 작게는5개의 그룹으로 나뉘는 것을 알 수 있었다.

• 생명과학회지
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• 제25권12호
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• pp.1347-1353
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• 2015

대하(Fenneropenaeus chinensis)는 우리나라에서 경제적으로 가장 중요한 양식생물 중 하나이다. 그러나 대하의 유전적 특성에 대한 연구는 전무하다. 본 연구에서는 새로 개발된 13개 미세위성체 유전자좌를 이용하여 우리나라에 서식하는 4개 지역 대하의 유전 다양성 및 집단간 관련성을 분석하였다. 평균 대립유전자 richness =16.87, 평균 이형접합률 =0.845를 보여 유전 다양성은 비교적 높은 수준을 보였다. 52개 유전좌중에서 13개 유전자좌가 집단간 분석에서 Hardy–Weinberg 평형에서 유의적인 차이로 벗어났다. Neighbor-joining, principal coordinate 및 molecular variance 분석 결과로 우리나라 대하 집단은 3개 집단(나라도, 천수만, 법성포 및 채석포)으로 구성되어 있으며, 이 결과는 유전적 거리에 근거한 군집 결과와 일치하였다. 본 연구에서 조사된 유전 다양성 및 분화결과는 앞으로 대하의 지속 가능한 자원관리 및 선발 육종을 통한 유전적 개량에 적용될 수 있을 것이다.

• Molecules and Cells
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• 제25권2호
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• pp.301-304
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• 2008

Microsatellites, short tandem repeats, are useful markers for genetic analysis because of their high frequency of occurrence over the genome, high information content due to variable repeat lengths, and ease of typing. To establish a panel of microsatellite markers useful for genetic studies of the Korean population, the allele frequencies and heterozygosities of 207 microsatellite markers in 119 unrelated Korean, Indian and Pakistani individuals were compared. The average heterozygosity of the Korean population was 0.71, similar to that of the Indian and Pakistani populations. More than 80% of the markers showed heterozygosity of over 0.6 and were valuable as genetic markers for genome-wide screening for disease susceptibility loci in these populations. To identify the allelic distributions of the multilocus genetic data from these microsatellite markers, the population structures were assessed by clustering. These markers supported, with the most probability, three clustering groups corresponding to the three geographical populations. When we assumed only two hypothetical clusters (K), the Korean population was separate from the others, suggesting a relatively deep divergence of the Korean population. The present 207 microsatellite markers appear to reflect the historical and geographical origins of the different populations as well as displaying a similar degree of variation to that seen in previously published genetic data. Thus, these markers will be useful as a reference for human genetic studies on Asians.

• Journal of Interdisciplinary Genomics
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• 제2권2호
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• pp.13-17
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• 2020

Infantile nystagmus syndrome (INS) is a genetically heterogeneous disorder. To date, more than 100 genes have been reported to cause INS and there is significant overlap in phenotypic characteristics. The most common form of X-linked INS is attributed to FRMD7 at Xq26. Recent advances in molecular genetics have facilitated the identification of pathogenic variants of FRMD7 and the investigation for underlying mechanisms of FRMD7-associated INS. This review summarizes genetic and clinical features of FRMD7-associated INS, and introduces updates on the pathogenesis of FRMD7 mutation.

• BMB Reports
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• 제36권5호
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• pp.488-492
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• 2003

Neurofilament-L (NF-L) is a major element of neuronal cytoskeletons and known to be important for neuronal survival in vivo. Since oxidative stress might play a critical role in the pathogenesis of neurodegenerative diseases, we investigated the role of copper and peroxide in the modification of NF-L. When disassembled NF-L was incubated with copper ion and hydrogen peroxide, then the aggregation of protein was proportional to copper and hydrogen peroxide concentrations. Dityrosine crosslink formation was obtained in copper-mediated NF-L aggregates. The copper-mediated modification of NF-L was significantly inhibited by thiol antioxidants, N-acetylcysteine, glutathione, and thiourea. A thioflavin-T binding assay was performed to determine whether the copper/$H_2O_2$ system-induced in vitro aggregation of NF-L displays amyloid-like characteristics. The aggregate of NF-L displayed thioflavin T reactivity, which was reminiscent of amyloid. This study suggests that copper-mediated NF-L modification might be closely related to oxidative reactions which may play a critical role in neurodegenerative diseases.

• ALGAE
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• 제28권1호
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• pp.53-62
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• 2013

Actinotrichia is a calcified galaxauracean red algal genus with temperate and tropical distributions in the Indian and Pacific Oceans. Morphological characteristics, along with rbcL and cox1 sequences, were analyzed from specimens collected in the western Pacific and the Indian Oceans. Both rbcL and cox1 data confirmed the occurrence of A. fragilis, A. robusta, and Actinotrichia sp. in this region. The presence of A. fragilis was verified in tropical Indo-Pacific and temperate northeast Asian waters and was characterized by high genetic diversity. Although A. robusta commonly occurs in the East China Sea, we confirmed its presence on rocks and crustose algae in the subtidal zone of three islands in the Andaman Sea. Actinotrichia sp. was similar to A. calcea in morphology and distribution, but with sufficiently different sequences, thus, additional sampling over the range will enable a more realistic evaluation of its taxonomic status.