• Title/Summary/Keyword: Marker and Cell method

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A Study on Turbulent Flow Fields around Ships (선체주위 난류유동장의 해석에 관한 연구)

  • Lee S. H.;Park J. J.
    • Journal of computational fluids engineering
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    • v.1 no.1
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    • pp.64-70
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    • 1996
  • Three dimensional turbulent flow fields around ships are simulated by a numerical method. Reynolds Averaged Navier-Stokes equations are used where Reynolds stresses are approximated by Baldwin-Lomax and Sub-Grid Scale(SGS) turbulence models. Body-fitted coordinate system is introduced to conform three dimensional ship geometries. The governing equations are discretized by a finite volume method. Temporal derivatives are approximated by the forward differencing and the convection terms are approximated by the QUICK or Kawamura scheme. The 2nd-order centered differencing is used for other spatial derivatives. Pressure and velocity fields are simultaneously iterated by the Highly Simplified Marker-And-Cell method. To verify the numerical method and turbulence models, flow fields around ships are simulated and compared to the experiments.

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Numerical Analysis of Wave Transformation of Permeable Breakwater Permitting Wave Overtopping (월파를 허용하는 투과성 방파제의 파랑변형에 관한 수치해석)

  • 김도삼;이광호
    • Journal of Ocean Engineering and Technology
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    • v.16 no.2
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    • pp.1-5
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    • 2002
  • In the past, ports have been mainly developed in natural harbors but nowadays ports are built wherever they can be economically justified. Therefore, construction of breakwater in area that establishment of structure is disadvantageous is risen according to the change of conditions to the location for ports. In case of building gravity breakwater in such point, need that plane shapes of more reasonable section permitting wave overtopping is necessary. One of the earliest methods for solving unsteady incompressible flow including free surfaces is the MAC(Marker And Cell) method by Harlow and Welch (1965). Recently. VOF(Volume Of Fluid) method to improve several drawbacks of MAC method is suggested by Hirt and Nichols(1981) and utilized extensively in fields of hydrodynamics. Wave overtopping phenomenon is simulated including wave breaking for permeable breakwater by numerical analysis and investigated features of wave overtopping behind structure using VOF method.

Identification of a High-yield Technique for Isolating Endometrial Epithelial Cells from the Mouse Uterus : A Comparison of Mechanical and Sedimentation-adherence Methods

  • Sohn, Jie Ohn;Jo, Yoon Mi;Park, Hye Jin;Ahn, Ji Yeon;Song, Hyun Jin;Lim, Jeong Mook;Lee, Seung Tae
    • Journal of Embryo Transfer
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    • v.31 no.1
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    • pp.73-80
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    • 2016
  • An in vitro assay following culture of endometrial epithelial cells is essential for understanding epithelial cell function in reproduction. Several diverse techniques have been developed for isolating endometrial epithelial cells, although an optimal technique has not been identified. In this study, we describe a sedimentation-adherence (S-A) isolation technique with a high-yield cell-separating ability to isolate endometrial epithelial cells from 8-week-old female C57BL/6 mice. We analyzed total cell number, viability, morphology, and expression of cytokeratin 18 as an endometrial epithelial cell-specific marker in cells isolated using a mechanical method compared to the S-A technique. There were no significant differences in the total number, viability, or morphology of the putative endometrial epithelial cells with either method. In contrast, significantly more endometrial epithelial cells harvested using the S-A method were positively stained for cytokeratin 18 than those isolated using the mechanical method. These results confirm that the S-A method is more efficient for retrieving endometrial epithelial cells than a mechanical method.

A Study on Turbulent Flow Fields around Ships (선체주위 난류유동장의 해석에 관한 연구)

  • Park J. J.;Lee S. H.
    • 한국전산유체공학회:학술대회논문집
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    • 1995.10a
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    • pp.148-153
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    • 1995
  • Three dimensional turbulent flow fields around ships are simulated by a numerical method. Reynolds Averaged Navier-Stokes equations are used where Reynolds stresses are approximated by Baldwin-Lomax and Sub-Grid Scale(SGS) turbulence models. Body-fitted coordinate system is introduced to conform three dimensional ship geometries. The governing equations are discretized by a finite volume method. Temporal derivatives are approximated by the forward differencing and the convection terms are approximated by the QUICK or Kawamura scheme. The 2nd-order centered differencing is used for other spatial derivatives. Pressure and velocity fields are simultaneously iterated by the Highly Simplified Marker-And-Cell method. To verity the numerical method and turbulence models, flow fields around ships are simulated and compared to the experiments.

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Determination of Tyrosinase mRNA in Melanoma by Reverse Transcription-PCR and Optical Mirror Resonance Biosensor

  • Taeboo Choe;Park, Inchul;Seokil Hong
    • Biotechnology and Bioprocess Engineering:BBE
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    • v.7 no.4
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    • pp.212-215
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    • 2002
  • Tyrosinase transcript In the blood Is known as the marker of malignant melanoma and it has been often determined by using reverse transcription-polymerase chain reaction (RT-PCA) . However, after the PCR process, the quantification of amplified CDMA by the gel electrophoresis is not reliable and time-consuming. for this reason, we tried to quantify the PCR product using a cuvette-type biosensor, where the oligonucleotide probe was immobilized on the cuvette surface and the single strand CDMA, the denatured PCH product, was then hybridized onto the immobilized probe to give a response signal. The response was Immediate and takes 15 min to obtain a stable signal. The biosensor was much more sensitive comparing to the gel electrophoresis method. The quantification of PCR product using a cuvette-type biosensor was feasible and rapid.

Inhibitory Studies of Scrophulariae Radix on Development of Dermatitis in NC/Nga Mice (현삼(玄蔘)이 NC/Nga mice에서 유발된 피부염에 미치는 영향)

  • Han, Jae-Kyung;Kim, Yun-Hee;Yeo, Eui-Ju
    • The Journal of Pediatrics of Korean Medicine
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    • v.21 no.2
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    • pp.13-34
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    • 2007
  • Objectives The purpose of this study is to examine of the effect of SPAR medicines on the atopy eruption control Methods This experiment is about the expression of IgE, IL-4, IL-6, IL_13, IgM, IgG2a, IgG2b, IgG1 level in serum, and $IFN-{\gamma}$ production by SPAR medicines. We assayed for $CD3e^+/CD69^+$, $CD044^+/CD19^+$ positive cells by flow cytometry in splenocytes and observed the revelation of $CD3e^+/CD69^+$, $CD4^+/CD8^+$, $CD44^+/CD19^+$ marker in PBMC, spleen and DLN. We also observed the outturn of IL-4, IL-5, CCR3, $IFN-{\gamma}$ in skin of a NC/Nga mice. We also analyzed NC/Nga mice's ear and neck-back skin after biopsy and dye by H&E staining method, measured about epidermis and dermis part in comparison with control group. Results SPAR medicines as treatment result to a NC/Nga mice, clinical skin severity score decreased remarkably than the ontrol group. Specially, experiment was results by measuring IgE and IL-6 content in serum 8 weeks, 10 weeks, 12 weeks, 16 weeks, 20 weeks respectively, and it was decreased remarkably than the control group. After experiment ended, the result that observed the revelation CD3e, CD4, CD8, CD19, CD69, CD11a marker in lymph node establishment were observed and that B/T rate becomes recover as normal with political background. In addition to that, the control group was decreased in the measured value of IL-4, IL-5, IL-13, IgM, IgG2a, IgG1's level in serum, and $IFN-{\gamma}$' production secreted in Th1 cell displayed increase by SPAR medicines. IL-4, IL-5, CCR3, and $IFN-{\gamma}$'s gene revelation amount displayed marked decrease than the control group in result that observe effect that get in skin of a NC/Nga dermatitis mouse. Moreover in culture supernatant which cultivate for 14 days after separate skin cell, IL-13 and IL-6 production, and $CD69^+/CD3e^+$, $CD44^+/CD19^+$ expression cell number was decreased than the control group's number. Course inflammation immunocyte permeated of result that effect that SPAR medicines get to NC/Nga mice's skin establishment analyzes ear and neck-back skin after biopsy, and dye by H&E method decreased about epidermis and inflammation of dermis part remarkably than the control group. Conclusions Th1 cell and Th2 cell observe to be shifted by secretion amount of IL-4 and $IFN-{\gamma}$ by SPAR medicines could know that SPAR medicines can be use for treatung allergy autoimmune disease.

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The number of primitive endoderm cells in the inner cell mass is regulated by platelet-derived growth factor signaling in porcine preimplantation embryos

  • Jong-Nam Oh;Mingyun Lee;Gyung Cheol Choe;Dong-Kyung Lee;Kwang-Hwan Choi;Seung-Hun Kim;Jinsol Jeong;Chang-Kyu Lee
    • Animal Bioscience
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    • v.36 no.8
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    • pp.1180-1189
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    • 2023
  • Objective: Discovering the mechanism of cell specification is important to manipulate cellular lineages. To obtain lineage-specific cell lines, the target lineage needs to be promoted, and counterpart lineages should be suppressed. Embryos in the early blastocyst stage possess two different cell populations, the inner cell mass (ICM) and trophectoderm. Then, cells in the ICM segregate into epiblasts (Epi) and primitive endoderm (PrE). PrE cells in embryos show specific expression of platelet-derived growth factor (PDGF) and its receptor, PDGF receptor A (PDGFRA). In this study, we suppressed PDGF signaling using two methods (CRISPR/Cas9 injection and inhibitor treatment) to provide insight into the segregation of embryonic lineages. Methods: CRISPR/Cas9 RNAs were injected into parthenogenetically activated and in vitro fertilized embryos. The PDGF receptor inhibitor AG1296 was treated at 0, 5, 10, and 20 µM concentration. The developmental competence of the embryos and the number of cells expressing marker proteins (SOX2 for ICM and SOX17 for PrE) were measured after the treatments. The expression levels of the marker genes with the inhibitor were examined during embryo development. Results: Microinjection targeting the PDGF receptor (PDGFR) A reduced the number of SOX17-positive cell populations in a subset of day 7 blastocysts (n = 9/12). However, microinjection accompanied diminution of Epi cells in the blastocyst. The PDGF receptor inhibitor AG1296 (5 µM) suppressed SOX17-positive cells without reducing SOX2-positive cells in both parthenogenetic activated and in vitro fertilized embryos. Within the transcriptional target of PDGF signaling, the inhibitor significantly upregulated the Txnip gene in embryos. Conclusion: We identified that PDGF signaling is important to sustain the PrE population in porcine blastocysts. Additionally, treatment with inhibitors was a better method to suppress PrE cells than CRISPR/Cas9 microinjection of anti-PDGF receptor α gene, because microinjection suppressed number of Epi cells. The PDGF receptor might control the number of PrE cells by repressing the proapoptotic gene Txnip. Our results can help to isolate Epi-specific cell lines from blastocysts.

Tumor Surpressor Gene Therany, and Natural Product with Vectors[Aoenouirus, Aoenn associated virus] in Human Papilloma virus (HPV[Human papilloma virus]유래 바이러스 벡터[Adenovirus, Adeno associated virus]를 이용한 암 억제유전자치료법과 자연산물에서의 암 억제 효과)

  • 천병수;노민석;유종수;김준명
    • KSBB Journal
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    • v.16 no.6
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    • pp.579-591
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    • 2001
  • The cell growth inhibitor effect of cervical cancer cells was investigated by liposome mediated transfection (pRcCMVp53/lipofectin) and by transfection using adenovirus (AdCMVp57). The papilloma virus cancer cell lines we used in this study were HPV16 positive, having inhibiter gene, wild p53 gene, CaSki, SiHa, HPV18 positive HeLa, HeLaS3 and HPV negative C33A, HT3. LacZ gene of E.coli was used as the marker gene for the transfection efficiency. The effect on the inhibition of tumor cell growth was measured by cell count and cell viability though ELISA analysis and MTT assay. The inhibition of tumor cell growth was confirmed by measuring each assay for six days, comparing with the normal control cell growth. The cell growth of cervical cancer calls by transfection was significantly reduced and showed tittle differences among the cell lines. To eliminate the potential problem of Ad(adenovirus) contamination during rAAV production, rAAV can be produced by a triple transfection of vector plasmic, packaging plasmid, and adenovirus helper plasmid. To examine the helper functions of Ad plasmids on the production of rAAV vector, we carried out cotransfection of three plasmids, AAV vector, packaging construct, and Ad helper plasmids. The optimized transfection condition for calcium phosphate method is 25ug of total DNA per 10-cm-diameter plate of 293 cell. We found that rAAV yields peaked at 48hr after Ad infection. The titer of rAAV was measured by the dot blot analysis to measure the number of particles/ml based on the quantification of viral DNA. Recent1y, Kombucha(fungi) was identified as a very potent antileukefic agent. In the present study, effect of natural toxin(plankton) and Kombucha is PSP(GTXI-3, neoSTX), on various MTT assay cervical cancer cell line. Toxin(GTX 1-3, neoSTX) also inhibited the proliferation in primary cervical cancer calls in a dose-dependent toxin concentration. These results showed that toxin was very potent in inhibiting the proliferation of cervical cancer calls in vitro. Toxins and Kombuoha exhibited a dose dependent inhibition of cellular proliferation in cancer cell line.

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Computations of Free-Surface Flows by Use of Marker and Cell Method (MAC 방법을 이용한 자유표면 유동계산)

  • PARK Jong-Chun;SHIN Myung-Soo;VAN Suak-Ho;KIM Wu-Joan
    • 한국전산유체공학회:학술대회논문집
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    • 1995.10a
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    • pp.138-147
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    • 1995
  • The boundary conditions for the free-surface including the important meaning for both scientific and engineering purposes are described together with the numerical techniques to implement the conditions. Two kinds of numerical method based on MAC method are introduced. One is applied to the problem of 2D solitary wave propagation and the other is applied to the problem of 3D bow wave breaking.

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AN EXTENSION OF THE SMAC ALGORITHM FOR THERMAL NON-EQUILIBRIUM TWO-PHASE FLOWS OVER UNSTRUCTURED NON-STAGGERED GRIDS (과도상태 2상유동 해석을 위한 비정렬.비엇갈림 격자 SMAC 알고리즘)

  • Park, I.K.;Yoon, H.Y.;Cho, H.K.;Kim, J.T.;Jeong, J.J.
    • Journal of computational fluids engineering
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    • v.13 no.3
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    • pp.51-61
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    • 2008
  • The SMAC (Simplified Marker And Cell) algorithm is extended for an application to thermal non-equilibrium two-phase flows in light water nuclear reactors (LWRs). A two-fluid three-field model is adopted and a multi-dimensional unstructured grid is used for complicated geometries. The phase change and the time derivative terms appearing in the continuity equations are implemented implicitly in a pressure correction equation. The energy equations are decoupled from the momentum equations for faster convergence. The verification of the present numerical method was carried out against a set of test problems which includes the single and the two-phase flows. The results are also compared to those of the semi-implicit ICE method, where the energy equations are coupled with the momentum equation for pressure correction.