• Title/Summary/Keyword: MPI-2

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The difference between the two methods for myocardial performance index in children (소아에서 심근 수행 지수 측정 방법간의 차이)

  • Joung, Jae-Il;Lee, Chang-Hyun;Kim, Jae-Kwang;Park, Kie-Young;Kim, Bong-Sung;Lee, Jung-Ju;Han, Myung-Ki
    • Clinical and Experimental Pediatrics
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    • v.49 no.12
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    • pp.1324-1328
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    • 2006
  • Purpose : The object of this study was to determine the difference between two methods for myocardial performance index(MPI) in children, using the conventional and pulsed Doppler echocardiography. Methods : A total of 27 children with anatomically normal hearts were enrolled for the study. all were examined by conventional and pulsed Doppler echocardiography at Gangneung Asan Hospital between December, 2005 and February, 2006. First, we measured the time interval(a1) between the mitral inflows from apical 4-chamber view, and the ejection time(ET1) from apical 5-chamber view. And then, we calculated MPI1, isovolumic contraction time(ICT1) and isovolumic relaxation time (IRT1). Secondly, we measured ICT2, ET2 and IRT2 from apical 5-chamber view with a Dopper signal placed at just below junction between mitral and aortic valve at the same cardiac cycle. And then, we calculated MPI2. We compared MPI1 to MPI2. All MPIs were calculated by using the formula, MPI=(ICT+IRT)/ET. Results : The mean age was $5.7{\pm}2.2years$ old(M:F=15:12). The MPI2 was higher than MPI1: $0.277{\pm}0.083$ vs. $0.428{\pm}0.081$(MPI1 vs MPI2, P=0.000). Also, the ICT2 was higher than ICT1: $56{\pm}15msec$ vs $97{\pm}18msec$(ICT1 vs ICT2, P=0.000) and the IRT2 was higher than IRT1: $42{\pm}8msec$ vs $53{\pm}9msec$(IRT1 vs IRT2, P=0.000). But, the ET2 was lower than ET1: $260{\pm}16msec$ vs $254{\pm}14msec$ (ET1 vs ET2, P=0.01). There was, as well, positive linear correlation between MPI1 and MPI2. Conclusion : This study showed that there is a difference between MPI1 and MPI2 in connection with estimating methods. However, the two MPIs had a positive linear correlation. Judging from our results, the MPI of the new method might be a useful index of venticular global function in children.

TIGRIS Grid MPI Service based on WSRF (WSRF기반의 TIGRIS 그리드 MPI 서비스)

  • Kwon, Oh-Kyoung;Hahm, Jae-Gyoon;Lee, Pill-Woo
    • The Journal of the Korea Contents Association
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    • v.8 no.1
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    • pp.137-142
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    • 2008
  • In this paper, we describe TIGRIS Grid MPI Service, which is 4he WS-Resource Framework (WSRF) based services to enable an MPI job to be executed on Grid environments. It covers heterogeneous compute resources and diverse MPI libraries. The main functionalities are as follows. First, it allows an MPI user to seamlessly launch a job without knowing how to use the specific MPI library. Secondly, it executes an MPI job on the cross-site resources by supporting the Grid-enabled MPI library such as MPICH-G2. Thirdly, it enables the user to launch a job using the source code without compiling. The service is implemented on top of the services of Globus Toolkit. We provide the user interface as a web portal and CLI(Command Line Interface).

TIGRIS Grid MPI Service based on WSRF (WSRF기반의 TIGRIS 그리드 MPI 서비스)

  • Kwon, Oh-Kyoung;Park, Kyung-Lang;Kwon, Oh-Young;Hahm, Jaegyoon;Lee, Pill Woo
    • Proceedings of the Korea Contents Association Conference
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    • 2007.11a
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    • pp.212-216
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    • 2007
  • In this paper, we describe TIGRIS Grid MPI Service, which is the WS-Resource Framework (WSRF) based services to enable an MPI job to be executed on Grid environments. It covers heterogeneous compute resources and diverse MPI libraries. The main functionalities are as follows. First, it allows an MPI user to seamlessly launch a job without knowing how to use the specific MPI library. Secondly, it executes an MPI job on the cross-site resources by supporting the Grid-enabled MPI library such as MPICH-G2. Thirdly, it enables the user to launch a job using the source code without compiling.

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Design and Implementation of a User-based MPI Checkpointer for Portability (이식성을 고려한 사용자기반 MPI 체크포인터의 설계 및 구현)

  • Ahn Sun-Il;Han Sang-Yong
    • Journal of KIISE:Computer Systems and Theory
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    • v.33 no.1_2
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    • pp.35-43
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    • 2006
  • An MPI Checkpointer is a tool which provides fault-tolerance through checkpointing The previous researches related to the MPI checkpointer have focused on automatic checkpointing and recovery capabilities, but they haven't considered portability issues. In this paper, we discuss design and implementation issues considered for portability when we developed an MPI checkpointer called STFT. In order to increase portability, firstly STFT supports the abstraction interface for a single process checkpointer. Secondly, STFT uses a user-based checkpointing method, and limits possible checkpointing places a user can make. Thirdly, STFT lets the MPI_Init create network connections to the other MPI processes in a fixed order. With these features, we expect STFT can be easily adaptable to various platforms and MPI implementations, and confirmed STFT is easily adaptable to LAM and MPICH/P4 with the prototype Implementation.

Optimization of Parallel Code for Noise Prediction in an Axial Fan Using MPI One-Sided Communication (MPI 일방향통신을 이용한 축류 팬 주위 소음해석 병렬프로그램 최적화)

  • Kwon, Oh-Kyoung;Park, Keuntae;Choi, Haecheon
    • KIPS Transactions on Computer and Communication Systems
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    • v.7 no.3
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    • pp.67-72
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    • 2018
  • Recently, noise reduction in an axial fan producing the small pressure rise and large flow rate, which is one type of turbomachine, is recognized as essential. This study describes the design and optimization techniques of MPI parallel program to simulate the flow-induced noise in the axial fan. In order to simulate the code using 100 million number of grids for flow and 70,000 points for noise sources, we parallelize it using the 2D domain decomposition. However, when it is involved many computing cores, it is getting slower because of MPI communication overhead among nodes, especially for the noise simulation. Thus, it is adopted the one-sided communication to reduce the overhead of MPI communication. Moreover, the allocated memory and communication between cores are optimized, thereby improving 2.97x compared to the original one. Finally, it is achieved 12x and 6x faster using 6,144 and 128 computing cores of KISTI Tachyon2 than using 256 and 16 computing cores for the flow and noise simulations, respectively.

Parallel Processing of Airborne Laser Scanning Data Using a Hybrid Model Based on MPI and OpenMP (MPI와 OpenMP기반 하이브리드 모델을 이용한 항공 레이저 스캐닝 자료의 병렬 처리)

  • Han, Soo-Hee;Park, Il-Suk;Heo, Joon
    • Journal of the Korean Society of Surveying, Geodesy, Photogrammetry and Cartography
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    • v.30 no.2
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    • pp.135-142
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    • 2012
  • In the present study, a parallel processing method running on a multi-core PC-Cluster is introduced to produce digital surface model (DSM) and digital terrain model (DTM) from huge airborne laser scanning data. A hybrid model using both message passing interface (MPI) and OpenMP was devised by revising a conventional MPI model which utilizes only MPI, and tested on a multi-core PC-Cluster for performance validation. In the results, the hybrid model has not shown better performances in the interpolation process to produce DSM, but the overall performance has turned out to be better by the help of reduced MPI calls. Additionally, scheduling function of OpenMP has revealed its ability to enhance the performance by controlling inequal overloads charged on cores induced by irregular distribution of airborne laser scanning data.

Comparison of Message Passing Interface and Hybrid Programming Models to Solve Pressure Equation in Distributed Memory System (분산 메모리 시스템에서 압력방정식의 해법을 위한 MPI와 Hybrid 병렬 기법의 비교)

  • Jeon, Byoung Jin;Choi, Hyoung Gwon
    • Transactions of the Korean Society of Mechanical Engineers B
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    • v.39 no.2
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    • pp.191-197
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    • 2015
  • The message passing interface (MPI) and hybrid programming models for the parallel computation of a pressure equation were compared in a distributed memory system. Both models were based on domain decomposition, and two numbers of the sub-domain were selected by considering the efficiency of the hybrid model. The parallel performances for various problem sizes were measured using up to 96 threads. It was found that in addition to the cache-memory size, the overhead of the MPI communication/OpenMP directives affected the parallel performance. For small problems, the parallel performance was low because the percentage of the overhead of the MPI communication/OpenMP directives increased as the number of threads increased, and MPI was better than the hybrid model because it had a smaller communication overhead. For large problems, the parallel performance was high because, in addition to the cache effect, the percentage of the communication overhead was relatively low compared to that for small problems, and the hybrid model was better than MPI because the communication overhead of MPI was more dominant than that of the OpenMP directives in the hybrid model.

Benchmarks for Performance Testing of MPI-IO on the General Parallel File System (범용 병렬화일 시스템 상에서 MPI-IO 방안의 성능 평가 벤티마크)

  • Park, Seong-Sun
    • The KIPS Transactions:PartA
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    • v.8A no.2
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    • pp.125-132
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    • 2001
  • IBM developed the MPI-IO, we call it MPI-2, on the General Parallel File System. We designed and implemented various Matrix Multiplication Benchmarks to evaluate its performances. The MPI-IO on the General Parallel File System shows four kinds of data access methods : the non-collective and blocking, the collective and blocking, the non-collective and non-blocking, and the split collective operation. In this paper, we propose benchmarks to measure the IO time and the computation time for the data access methods. We describe not only its implementation but also the performance evaluation results.

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Chemical Properties of Mungbean Protein Isolates (분리녹두단백질의 화학적 조성에 관한 연구)

  • Kye, In-Sug;Jun, Yeong-Soo;Cheigh, Hong-Sik
    • Journal of the Korean Society of Food Science and Nutrition
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    • v.18 no.4
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    • pp.423-429
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    • 1989
  • This study was investigated to determine the amino acid content, fractionation and gel electrophoresis pattern of mungbean protein isolates(MPI), which were prepared from defatted mungbean flour(DMBF) of sunhwa-nogdu(SH) and conventional(C) mungbean varieties. MPI have particulary high content of lysine and low sulfur containing amino acids, even though amino acid pattern of mungbean flour and its protein isolate were found to be similar And, there was no significant difference In the amino acid composition between SH and C varieties. Further fractionation of MPI by solubility method and electrophoresis procedure was demonstrated that the fractions, such as albumin, globulin, glutelin and residue from MPI showed $6{\sim}10$ bands in SDS/PAGE pattern. And also the most of each protein fractions had lower molecular weight than 68,000 daltons and distributed more in the molecular weight range $43,000{\sim}68,000$ daltons.

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A Comparison Study on Functional Properties of Mungbean Protein and Chemically Modified Mungbean Protein (분리 녹두 단백질과 이를 화학적으로 수식화한 단백질간의 식품학적 기능성 비교)

  • Sohn, Kyung-Hee;Min, Sung-Hee;Park, Hyun-Kyung;Park, Jin
    • Korean journal of food and cookery science
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    • v.7 no.3
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    • pp.53-59
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    • 1991
  • This study was carried out in order to investigate the change of protein functionalities such as foaming and emulsifying properties by succinylation of protein isolates. Succinylated and unsuccinylated munghean protein isolates were tested for finding out the effects of pH, heat treatment and sodium chloride concentration on the solubility, emulsion capacity, emulsion stability, foaming capacity, and foam stability. The results are summarized as follows: 1. Succinylation enhanced the solubility of MPI except at pH 4.5. When heated, succinylation greatly increased the solubility of succinylated MPI above $60^{\circ}C$. With the addition of NaCl, succinylation increased the solubility of MPI at acidic condition. 2. Emulsion capacity of succinylated MPI showed the lowest value at pH 7 and higher values at acidic and alkaine condition. when succinylated MPI was heated, emulsion capacity showed the highest at $80^{\circ}C$. With NaCl was added, emulsion capacity of succinylated MPI lincreased at pH 7, 9 or 11 decreased at pH 3 except addition of 1.0M NaCl. 3. Emulsion stability of MPI and succinylated MPI showed the highest at pH 4.5. Succinylation enhanced the emulsion stability of MPI at acidic condition. 4. The foaming capacity of MPI was increased at pH 3, 7 or 9 by succinylation. 5. When heated, foam stability of MPI and succinylated MPI showed the highest at pH 4.5 and at pH 11, respectively. When heated, both proteins showed the highest stability at $100^{\circ}C$.

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