• Title/Summary/Keyword: MAP3K16

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Mapping the water table at the Cheongju-Gadeok site of the Korea National Groundwater Monitoring Network using multiple geophysical methods

  • Ju, Hyeon-Tae;Sa, Jin-Hyeon;Kim, Ji-Soo
    • The Journal of Engineering Geology
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    • v.27 no.3
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    • pp.305-312
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    • 2017
  • The most effective way to distinguish subsurface interfaces that produce various geophysical responses is through the integration of multiple geophysical methods, with each method detecting both a complementary and unique set of distinct physical properties relating to the subsurface. In this study, shallow seismic reflection (SSR) and ground penetrating radar (GPR) surveys were conducted at the Cheongju-Gadeok site of the Korea National Groundwater Monitoring Network to map the water table, which was measured at 12 m depth during the geophysical surveys. The water table proved to be a good target reflector in both datasets, as the abrupt transition from the overlying unsaturated weathered rock to the underlying saturated weathered rock yielded large acoustic impedance and dielectric constant contrasts. The two datasets were depth converted and integrated into a single section, with the SSR and GPR surveys conducted to ensure subsurface imaging at approximately the same wavelength. The GPR data provided detailed information on the upper ~15 m of the section, whereas the SSR data imaged structures at depths of 10-45 m. The integrated section thus captured the full depth coverage of the sandy clay, water table, weathered rock, soft rock, and hard rock structures, which correlated well with local drillcore and water table observations. Incorporation of these two geophysical datasets yielded a synthetic section that resembled a simplified aquifer model, with the best-fitting seismic velocity, dielectric constant, and porosity of the saturated weathered layer being $v_{seismic}=1000m/s$, ${\varepsilon}_r=16$, and ${\phi}=0.32$, respectively.

Identification of growth trait related genes in a Yorkshire purebred pig population by genome-wide association studies

  • Meng, Qingli;Wang, Kejun;Liu, Xiaolei;Zhou, Haishen;Xu, Li;Wang, Zhaojun;Fang, Meiying
    • Asian-Australasian Journal of Animal Sciences
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    • v.30 no.4
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    • pp.462-469
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    • 2017
  • Objective: The aim of this study is to identify genomic regions or genes controlling growth traits in pigs. Methods: Using a panel of 54,148 single nucleotide polymorphisms (SNPs), we performed a genome-wide Association (GWA) study in 562 pure Yorshire pigs with four growth traits: average daily gain from 30 kg to 100 kg or 115 kg, and days to 100 kg or 115 kg. Fixed and random model Circulating Probability Unification method was used to identify the associations between 54,148 SNPs and these four traits. SNP annotations were performed through the Sus scrofa data set from Ensembl. Bioinformatics analysis, including gene ontology analysis, pathway analysis and network analysis, was used to identify the candidate genes. Results: We detected 6 significant and 12 suggestive SNPs, and identified 9 candidate genes in close proximity to them (suppressor of glucose by autophagy [SOGA1], R-Spondin 2 [RSPO2], mitogen activated protein kinase kinase 6 [MAP2K6], phospholipase C beta 1 [PLCB1], rho GTPASE activating protein 24 [ARHGAP24], cytoplasmic polyadenylation element binding protein 4 [CPEB4], GLI family zinc finger 2 [GLI2], neuronal tyrosine-phosphorylated phosphoinositide-3-kinase adaptor 2 [NYAP2], and zinc finger protein multitype 2 [ZFPM2]). Gene ontology analysis and literature mining indicated that the candidate genes are involved in bone, muscle, fat, and lung development. Pathway analysis revealed that PLCB1 and MAP2K6 participate in the gonadotropin signaling pathway and suggests that these two genes contribute to growth at the onset of puberty. Conclusion: Our results provide new clues for understanding the genetic mechanisms underlying growth traits, and may help improve these traits in future breeding programs.

Generation of the KOMPSAT-2 Ortho Mosaic Imagery on the Korean Peninsula (아리랑위성 2호 한반도 정사모자이크영상 제작)

  • Lee, Kwang-Jae;Yyn, Hee-Cheon;Kim, Youn-Soo
    • Journal of the Korean Association of Geographic Information Studies
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    • v.16 no.3
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    • pp.103-114
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    • 2013
  • In this study, we established the ortho mosaic imagery on the Korean Peninsula using KOMPSAT-2 images and conducted an accuracy assessment. Rational Polynomial Coefficient(RPC) modeling results were mostly less than 2 pixels except for mountainous regions which was difficult to select a Ground Control Point(GCP). Digital Elevation Model(DEM) which was made using the digital topographic map on the scale of 1:5,000 was used for generating an ortho image. In the case of inaccessible area, the Shuttle Radar Topography Mission(SRTM) DEM was used. Meanwhile, the ortho mosaic image of the Korean Peninsula was produced by each ortho image aggregation and color adjustment. An accuracy analysis for the mosaic image was conducted about a 1m color fusion image. In order to verify a geolocation accuracy, 813 check points which were acquired by field survey in South Korea were used. We found that the maximum error was not to exceed 5m(Root Mean Square Error : RMSE). On the other hand, in the case of inaccessible area, the extracted check points from a reference image were used for accuracy analysis. Approximately 69% of the image has a positional accuracy of less than 3m(RMSE). We found that the seam-line accuracy among neighboring image was very high through visual inspection. However, there were a discrepancy with 1 to 2 pixels at some mountainous regions.

Development and Molecular Characterization of Novel Polymorphic Genomic DNA SSR Markers in Lentinula edodes

  • Moon, Suyun;Lee, Hwa-Yong;Shim, Donghwan;Kim, Myungkil;Ka, Kang-Hyeon;Ryoo, Rhim;Ko, Han-Gyu;Koo, Chang-Duck;Chung, Jong-Wook;Ryu, Hojin
    • Mycobiology
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    • v.45 no.2
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    • pp.105-109
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    • 2017
  • Sixteen genomic DNA simple sequence repeat (SSR) markers of Lentinula edodes were developed from 205 SSR motifs present in 46.1-Mb long L. edodes genome sequences. The number of alleles ranged from 3-14 and the major allele frequency was distributed from 0.17-0.96. The values of observed and expected heterozygosity ranged from 0.00-0.76 and 0.07-0.90, respectively. The polymorphic information content value ranged from 0.07-0.89. A dendrogram, based on 16 SSR markers clustered by the paired hierarchical clustering' method, showed that 33 shiitake cultivars could be divided into three major groups and successfully identified. These SSR markers will contribute to the efficient breeding of this species by providing diversity in shiitake varieties. Furthermore, the genomic information covered by the markers can provide a valuable resource for genetic linkage map construction, molecular mapping, and marker-assisted selection in the shiitake mushroom.

Analysis of Spatial Precipitation Field Using Downscaling on the Korean Peninsula (상세화 기법을 통한 한반도 공간 강우장 분석)

  • Cho, Herin;Hwang, Seokhwan;Cho, Yongsik;Choi, Minha
    • Journal of Korea Water Resources Association
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    • v.46 no.11
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    • pp.1129-1140
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    • 2013
  • Precipitation is one of the important factors in the hydrological cycle. It needs to understand accurate of spatial precipitation field because it has large spatio-temporal variability. Precipitation data obtained through the Tropical Rainfall Monitoring Mission (TRMM) 3B43 product is inaccurate because it has 25 km space scale. Downscaling of TRMM 3B43 product can increase the accuracy of spatial precipitation field from 25 km to 1 km scale. The relationship between precipitation and the normalized difference vegetation index(NDVI) (1 km space scale) which is obtained from the Moderate Resolution Imaging Spectroradiometers (MODIS) sensor loaded in Terra satellite is variable at different scales. Therefore regression equations were established and these equations apply to downscaling. Two renormalization strategies, Geographical Difference Analysis (GDA) and Geographical Ratio Analysis (GRA) are implemented for correcting the differences between remote sensing-derived and rain gauge data. As for considering the GDA method results, biases, the root mean-squared error (RMSE), MAE and Index of agreement (IOA) is equal to 4.26 mm, 172.16 mm, 141.95 mm, 0.64 in 2009 and 17.21 mm, 253.43 mm, 310.56 mm, 0.62 in 2011. In this study, we can see the 1km spatial precipitation field map over Korea. It will be possible to get more accurate spatial analysis of the precipitation field through using the additional rain gauges or radar data.

A Study on the User Needs Analysis to Improve OASIS (전통의학 정보포털 활성화를 위한 사용자 요구 분석에 관한 연구)

  • Yea, Sang-Jun;Kim, Ha-Young;Kim, Chul;Kim, Jin-Hyun;Kim, Sang-Kyun;Jang, Hyun-Chul;Song, Mi-Young
    • Korean Journal of Oriental Medicine
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    • v.16 no.2
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    • pp.109-118
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    • 2010
  • Traditional Korean Medicine Information Portal OASIS has been upgraded continuously from the beginning of it's service. It builds up more contents and adds more functions to provide rich information for TKM's researcher. But it's improvement strategy is not systematic and not supported from objective data. So we did online survey and analyzed the results to get insight for improving and activating the OASIS. Also we compared the survey with the previous one conducted in 2009. From the analysis of survey, we can get the 4 results. First OASIS have aged users than young users. Second 39.0% users are using OASIS 2-3 times in a month. Third 18.8% users want OASIS to provide the conference paper in TKM. Finally 21.7% users want paper map analysis system. We must do information strategy planning to get the insight for the improvement. And this survey analysis result will be most important material to our planning. Also we will use this survey analysis result to satisfy the users' needs.

The Kinematic Analysis on The Stand Long Jump of Visually Impaired Persons (시각장애인의 제자리멀리뛰기 동작에 대한 운동학적 분석)

  • Oh, Cheong-Hwan;Choi, Jung-Kyu;Jeong, Ik-Su;Lee, Dong-Gin;Choi, Su-Nam;Nam, Taek-Gil
    • Korean Journal of Applied Biomechanics
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    • v.16 no.4
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    • pp.39-47
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    • 2006
  • This study long jump action to each situation on a chessboard and section of sight disabled person and normal person through third dimension reflex analysis mechanical special quality because do comparative analysis sight disabled person's exercise ability and technology structure of action that run understand. As can do better without danger of injury map and training of exercise item that action that run is included, do offer of pabulum by purpose. Through this study, conclusion is as following. 1. Sight disabled persons' long jump average recording (121.84cm) showing normal persons' average recording (259.27cm) and much differences, show that motion of body is not big to Touch-down from Ready action. 2. Each phase body center composition(r) average speed displayed result that it is more meaning more than Each phase time required. 3. Began in line carriage without body back stretching in 1 situation on Event one are sight disabled persons. Was expose that do not bend enough knee and ankle than normal person in Event two. Was expose that body is not drooped for surface of land in Event three, and knee and ankle were expose that do not unfold easily than normal person. Was expose that do not bend enough on Touch-down knee by relation that can not grasp position of the floor in Event four. 4. When taking off, the average of horizontal speed of body center are 1.80m/sec for blind people and 3.53m/sec for the normal. In this connection, the study shows that the difference of horizontal speed between the blind and the normal is bigger than difference of vertical speed, which are 1.56m/sec for the blind and 1.98m/sec for the normal. Also, composite speed also shows us big difference between 2.41m/sec of the blind and 4.07m/sec of the normal. The speed body center of take-off was expose that average adjuster are big width of deceleration than average - beginning disabled person's average by 2.23m/sec - 1.71m/sec in the vertical speed. 5. If examine change of high and low for z Sign of right hand, change of high and low showed as is small than normal person is sight obstacle, and all hand movements are small and was expose that do not use enough reaction of body as well as in ready action.

Geographical distribution range and growth environmental characteristics of Deutzia paniculata Nakai, a Korean Endemic Plant (한반도 특산식물 꼬리말발도리의 분포와 생육환경특성)

  • Jung, Ji-young;An, Jong-Bin;Yun, Ho-Geun;Jung, Su-Young;Shin, Hyun-Tak;Son, Sung-won
    • Journal of the Korean Society of Environmental Restoration Technology
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    • v.23 no.2
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    • pp.1-16
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    • 2020
  • The current status of geographical distribution range of Deutzia paniculata, one of the korean endemic plants, was investigated based on the species distribution information. The information of the geographical range used for analysis includes all the published references to the distribution of D. paniculata, herbarium specimens in Korea National Arboretum (KH) including its online database: http://www.nature.go.kr, and field research. Although, D. paniculata was firstly recorded in Wonsan, Hamgyeongnam-do, North Korea, this research revelaved that D. paniculata is mainly distributed in Gyeongsangbuk-do and Gyeongsangnam-do, southern regions of the Korean Peninsula. According to the distribution map, this species was estimated on distribution edge of in Anyang region of Gyeonggi-do, Mt. Naejang of Jeollabuk-do and Mt. Taebaek of Gwangwon-do on the distribution edge. However, it was made use of intensive field survey to identify the natural population of the species in these regions. D. paniculata habitat was mainly distributed between 290 meters and 491 meters in altitude, but it was also found ranged from 936 to 959 meters in Gun-wi, Gyeongsangbuk-do, South Korea. The distribution slope was 5° to 35° and the north, N, NE and NW in the aspect. The flora of vascular plants in D. paniculata habitats was listed in 137 taxa: 54 families, 103 genera, 120 species, 2 subspecies, 12 varieties and 3 forms while Korean endemic plants were found in three taxa, Stewartia koreana, Weigela subsessilis and D. Paniculata. Based on a collection of non-biological environment and biological environment data, D. paniculata population were discussed to make strategy and basic research methods for sustainable preservation.

Optimization of Dressing Preparation from Yogurt Added Saururus chinensis (Lour.) Bail Extract (삼백초 추출물 첨가 요구르트를 이용한 드레싱 제조의 최적화)

  • HwangBo Mi-Hyang;Kim Hyun-Jeong;Yu Mi-Hee;Lee Ji-Won;Lee In-Sean
    • Korean journal of food and cookery science
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    • v.22 no.1 s.91
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    • pp.22-29
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    • 2006
  • Yogurt base was prepared from milk powder $(14\sim18%)$ to which was added 0.4% Saururus chinensis (Lour.) Bail water extract (SCE) and fermented with lactic acid bacteria (a mixed strain of Streptococcus thermophilus and Lactobacillus bulgaricus) at $37^{\circ}C$ for 24 hr. The viscosity of the yogurt added SCE (SCE yogurt) made from 18% milk was higher than that of SCE yogurt containing $14\sim16%$ milk, whereas the pH and titratable acidity of the SCE yogurt were not significantly different on the range of milk contents. The optimal milk concentration for SCE yogurt manufacture was 18%. In order to optimize the preparation of dressing from SCE yogurt, the central composite design was conducted in terms of the yogurt (30, 40, 50, 60, 70 g), the mayonnaise (6, 12, 18, 24, 30 g) and the salt (0.1, 0.3, 0.5, 0.7, 0.9 g) contents. Sensory evaluation was performed and evaluated using a response surface methodology. The optimum ingredient ratio for SCE yogurt dressing was determined to be 61.2% of yogurt, 23.5% of mayonnaise, 0.58% of salt, 0.58% of honey, 1.75% of mustard, 0.23% of Tabasco pepper sauce, 0.94% of wine and 0.04% of white pepper.

Large-Scale Slope Stability Analysis Using Climate Change Scenario (1): Methodologies (기후변화 시나리오를 이용한 광역 사면안정 해석(1): 방법론)

  • Choi, Byoung-Seub;Oh, Sung-Ryul;Lee, Kun-Hyuk;Lee, Gi-Ha;Kwon, Hyun-Han
    • Journal of the Korean Association of Geographic Information Studies
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    • v.16 no.3
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    • pp.193-210
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    • 2013
  • This study aims to assess the slope stability variation of Jeollabuk-do drainage areas by RCM model outputs based on A1B climate change scenario and infinite slope stability model based on the specific catchment area concept. For this objective, we downscaled RCM data in time and space: from watershed scale to rain gauge scale in space and from monthly data to daily data in time and also developed the GIS-based infinite slope stability model based on the concept of specific catchment area to calculate spatially-distributed wetness index. For model parameterization, topographic, geologic, forestry digital map were used and model parameters were set up in format of grid cells($90m{\times}90m$). Finally, we applied the future daily rainfall data to the infinite slope stability model and then assess slope stability variation under the climate change scenario. This research consists of two papers: the first paper focuses on the methodologies of climate change scenario preparation and infinite slope stability model development.