• Title/Summary/Keyword: Local search

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Development of Local Animal BLAST Search System Using Bioinformatics Tools (생물정보시스템을 이용한 Local Animal BLAST Search System 구축)

  • Kim, Byeong-Woo;Lee, Geun-Woo;Kim, Hyo-Seon;No, Seung-Hui;Lee, Yun-Ho;Kim, Si-Dong;Jeon, Jin-Tae;Lee, Ji-Ung;Jo, Yong-Min;Jeong, Il-Jeong;Lee, Jeong-Gyu
    • Bioinformatics and Biosystems
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    • v.1 no.2
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    • pp.99-102
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    • 2006
  • The Basic Local Alignment Search Tool (BLAST) is one of the most established software in bioinformatics research and it compares a query sequence against the libraries of known sequences in order to investigate sequence similarity. Expressed Sequence Tags (ESTs) are single-pass sequence reads from mRNA (or cDNA) and represent the expression for a given cDNA library and the snapshot of genes expressed in a given tissue and/or at a given developmental stage. Therefore, ESTs can be very valuable information for functional genomics and bioinformatics researches. Although major bio database (DB) websites including NCBI are providing BLAST services and EST data, local DB and search system is demanding for better performance and security issue. Here we present animal EST DBs and local BLAST search system. The animal ESTs DB in NCBI Genbank were divided by animal species using the Perl script we developed. and we also built the new extended DB search systems fur the new data (Local Animal BLAST Search System: http://bioinfo.kohost.net), which was constructed on the high-capacity PC Cluster system fur the best performance. The new local DB contains 650,046 sequences for Bos taurus(cattle), 368,120 sequences for Sus scrofa (pig), 693,005 sequences for Gallus gallus (fowl), respectively.

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Integer Programming-based Local Search Techniques for the Multidimensional Knapsack Problem (다차원 배낭 문제를 위한 정수계획법 기반 지역 탐색 기법)

  • Hwang, Jun-Ha
    • Journal of the Korea Society of Computer and Information
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    • v.17 no.6
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    • pp.13-27
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    • 2012
  • Integer programming-based local search(IPbLS) is a kind of local search based on simple hill-climbing search and adopts integer programming for neighbor generation unlike general local search. According to an existing research [1], IPbLS is known as an effective method for the multidimensional knapsack problem(MKP) which has received wide attention in operations research and artificial intelligence area. However, the existing research has a shortcoming that it verified the superiority of IPbLS targeting only largest-scale problems among MKP test problems in the OR-Library. In this paper, I verify the superiority of IPbLS more objectively by applying it to other problems. In addition, unlike the existing IPbLS that combines simple hill-climbing search and integer programming, I propose methods combining other local search algorithms like hill-climbing search, tabu search, simulated annealing with integer programming. Through the experimental results, I confirmed that IPbLS shows comparable or better performance than the best known heuristic search also for mid or small-scale MKP test problems.

Fast Motion Estimation Using Local Statistics of Neighboring Motion Vectors (인접 블록 움직임 벡터의 지역적 통계 특성을 이용한 고속 움직임 추정 기법)

  • Kim, Ki-Beom;Jeong, Chan-Young;Hong, Min-Cheol
    • Journal of Broadcast Engineering
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    • v.13 no.1
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    • pp.128-136
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    • 2008
  • In this paper, we propose a variable step search fast motion estimation algorithm using local statistics of neighboring motion vectors. Using the degree of correlation between neighboring motion vectors, motion search range is adaptively adjusted to reduce unnecessary search points. Based on the adjusted search range, motion vector is obtained by variable search step. Experimental results show that the proposed algorithm has the capability to dramatically reduce the search points and computing cost for motion estimation, comparing to fast full spiral search motion estimation and other fast motion estimation.

Solving Facility Rearrangement Problem Using a Genetic Algorithm and a Heuristic Local Search

  • Suzuki, Atsushi;Yamamoto, Hisashi
    • Industrial Engineering and Management Systems
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    • v.11 no.2
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    • pp.170-175
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    • 2012
  • In this paper, a procedure using a genetic algorithm (GA) and a heuristic local search (HLS) is proposed for solving facility rearrangement problem (FRP). FRP is a decision problem for stopping/running of facilities and integration of stopped facilities to running facilities to maximize the production capacity of running facilities under the cost constraint. FRP is formulated as an integer programming model for maximizing the total production capacity under the constraint of the total facility operating cost. In the cases of 90 percent of cost constraint and more than 20 facilities, the previous solving method was not effective. To find effective alternatives, this solving procedure using a GA and a HLS is developed. Stopping/running of facilities are searched by GA. The shifting the production operation of stopped facilities into running facilities is searched by HLS, and this local search is executed for one individual in this GA procedure. The effectiveness of the proposed procedure using a GA and HLS is demonstrated by numerical experiment.

MOTION VECTOR DETECTION ALGORITHM USING THE STEEPEST DESCENT METHOD EFFECTIVE FOR AVOIDING LOCAL SOLUTIONS

  • Konno, Yoshinori;Kasezawa, Tadashi
    • Proceedings of the Korean Society of Broadcast Engineers Conference
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    • 2009.01a
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    • pp.460-465
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    • 2009
  • This paper presents a new algorithm that includes a mechanism to avoid local solutions in a motion vector detection method that uses the steepest descent method. Two different implementations of the algorithm are demonstrated using two major search methods for tree structures, depth first search and breadth first search. Furthermore, it is shown that by avoiding local solutions, both of these implementations are able to obtain smaller prediction errors compared to conventional motion vector detection methods using the steepest descent method, and are able to perform motion vector detection within an arbitrary upper limit on the number of computations. The effects that differences in the search order have on the effectiveness of avoiding local solutions are also presented.

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An Integer Programming-based Local Search for the Multiple-choice Multidimensional Knapsack Problem

  • Hwang, Junha
    • Journal of the Korea Society of Computer and Information
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    • v.23 no.12
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    • pp.1-9
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    • 2018
  • The multiple-choice multidimensional knapsack problem (MMKP) is a variant of the well known 0-1 knapsack problem, which is known as an NP-hard problem. This paper proposes a method for solving the MMKP using the integer programming-based local search (IPbLS). IPbLS is a kind of a local search and uses integer programming to generate a neighbor solution. The most important thing in IPbLS is the way to select items participating in the next integer programming step. In this paper, three ways to select items are introduced and compared on 37 well-known benchmark data instances. Experimental results shows that the method using linear programming is the best for the MMKP. It also shows that the proposed method can find the equal or better solutions than the best known solutions in 23 data instances, and the new better solutions in 13 instances.

A Study on a New Function Optimization Method Using Probabilistic Tabu Search Strategy (확률적 타부 탐색 전략을 이용한 새로운 함수 최적화 방법에 관한 연구)

  • Kim, Hyung-Su;Hwang, Gi-Hyun;Park, June-Ho
    • The Transactions of the Korean Institute of Electrical Engineers D
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    • v.50 no.11
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    • pp.532-540
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    • 2001
  • In this paper, we propose a probabilistic tabu search strategy for function optimization. It is composed of two procedures, one is Basic search procedure that plays a role in local search, and the other is Restarting procedure that enables to diversify search region. In basic search procedure, we use Belief space and Near region to create neighbors. Belief space is made of high-rank neighbors to effectively restrict searching space, so it can improve searching time and local or global searching capability. When a solution is converged in a local area, Restarting procedure works to search other regions. In this time, we use Probabilistic Tabu Strategy(PTS) to adjust parameters such as a reducing rate, initial searching region etc., which makes enhance the performance of searching ability in various problems. In order to show the usefulness of the proposed method, the PTS is applied to the minimization problems such as De Jong functions, Ackley function, and Griewank functions etc., the results are compared with those of GA or EP.

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A Study on the Crawling and Classification Strategy for Local Website (로컬 웹사이트의 탐색전략과 웹사이트 유형분석에 관한 연구)

  • Hwang In-Soo
    • Journal of Information Technology Applications and Management
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    • v.13 no.2
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    • pp.55-65
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    • 2006
  • Since the World-Wide Web (WWW) has become a major channel for information delivery, information overload also has become a serious problem to the Internet users. Therefore, effective information searching is critical to the success of Internet services. We present an integrated search engine for searching relevant web pages on the WWW in a certain Internet domain. It supports a local search on the web sites. The spider obtains all of the web pages from the web sites through web links. It operates autonomously without any human supervision. We developed state transition diagram to control navigation and analyze link structure of each web site. We have implemented an integrated local search engine and it shows that a higher satisfaction is obtained. From the user evaluation, we also find that higher precision is obtained.

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The Impacts of AI-enabled Search Services on Local Economy (AI 기반 장소 검색 서비스가 지역 경제에 미치는 영향에 대한 실증 연구)

  • Heejin Joo;Jeongmin Kim;Jeemahn Shin;Keongtae Kim;Gunwoong Lee
    • Information Systems Review
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    • v.23 no.3
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    • pp.77-96
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    • 2021
  • This research investigates the pivotal role of AI-enabled technologies in vitalizing the local economy. Collaborating with a leading search engine company, we examine the direct and indirect of an AI-based location search service on the success of sampled 7,035 local restaurants in Gangnam area in Seoul. We find that increased use of AI-enabled search and recommendation services significantly improved the selections of previously less-discovered or less-popular restaurants by users, and it also enhanced the stores' overall conversion rates. The main research findings have contributions to extant literature in theorizing the value of AI applications in local economy and have managerial implications for search businesses and local stores by recommending strategic use of AI applications in their businesses that are effective in highly competitive markets.

An Integer Programming-based Local Search for the Set Covering Problem (집합 커버링 문제를 위한 정수계획법 기반 지역 탐색)

  • Hwang, Jun-Ha
    • Journal of the Korea Society of Computer and Information
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    • v.19 no.10
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    • pp.13-21
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    • 2014
  • The set covering problem (SCP) is one of representative combinatorial optimization problems, which is defined as the problem of covering the m-rows by a subset of the n-columns at minimal cost. This paper proposes a method utilizing Integer Programming-based Local Search (IPbLS) to solve the set covering problem. IPbLS is a kind of local search technique in which the current solution is improved by searching neighborhood solutions. Integer programming is used to generate neighborhood solution in IPbLS. The effectiveness of the proposed algorithm has been tested on OR-Library test instances. The experimental results showed that IPbLS could search for the best known solutions in all the test instances. Especially, I confirmed that IPbLS could search for better solutions than the best known solutions in four test instances.