• 제목/요약/키워드: Linkage analysis

검색결과 1,282건 처리시간 0.027초

Multiple Linkage Disequilibrium Mapping Methods to Validate Additive Quantitative Trait Loci in Korean Native Cattle (Hanwoo)

  • Li, Yi;Kim, Jong-Joo
    • Asian-Australasian Journal of Animal Sciences
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    • 제28권7호
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    • pp.926-935
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    • 2015
  • The efficiency of genome-wide association analysis (GWAS) depends on power of detection for quantitative trait loci (QTL) and precision for QTL mapping. In this study, three different strategies for GWAS were applied to detect QTL for carcass quality traits in the Korean cattle, Hanwoo; a linkage disequilibrium single locus regression method (LDRM), a combined linkage and linkage disequilibrium analysis (LDLA) and a $BayesC{\pi}$ approach. The phenotypes of 486 steers were collected for weaning weight (WWT), yearling weight (YWT), carcass weight (CWT), backfat thickness (BFT), longissimus dorsi muscle area, and marbling score (Marb). Also the genotype data for the steers and their sires were scored with the Illumina bovine 50K single nucleotide polymorphism (SNP) chips. For the two former GWAS methods, threshold values were set at false discovery rate <0.01 on a chromosome-wide level, while a cut-off threshold value was set in the latter model, such that the top five windows, each of which comprised 10 adjacent SNPs, were chosen with significant variation for the phenotype. Four major additive QTL from these three methods had high concordance found in 64.1 to 64.9Mb for Bos taurus autosome (BTA) 7 for WWT, 24.3 to 25.4Mb for BTA14 for CWT, 0.5 to 1.5Mb for BTA6 for BFT and 26.3 to 33.4Mb for BTA29 for BFT. Several candidate genes (i.e. glutamate receptor, ionotropic, ampa 1 [GRIA1], family with sequence similarity 110, member B [FAM110B], and thymocyte selection-associated high mobility group box [TOX]) may be identified close to these QTL. Our result suggests that the use of different linkage disequilibrium mapping approaches can provide more reliable chromosome regions to further pinpoint DNA makers or causative genes in these regions.

전달각을 이용한 오프셋 슬라이더-로커 링크장치의 합성 (Offset Slider-Rocker Linkage Synthesis Using Transmission Angles as Synthesis Parameters)

  • 권성규
    • 대한기계학회논문집A
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    • 제24권4호
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    • pp.881-893
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    • 2000
  • An analytical synthesis technique for offset slider-rocker 4-bar linkages is devised where transmission angles are used as essential synthesis parameters. Finding the location where both the maximum and the minimum transmission angles arise leads to establishing the algorithm for limiting transmission angles of the slider-rocker linkage which has different offsets according to the direction of the slider. Position analysis by the algorithm gives formula for the dimensional synthesis for the linkage. Application to examples shows that the algorithm and the formula yield proper slider-rocker linkages with regard to limiting transmission angles to the maximum value.

Construction of a Genetic Linkage Map of Shiitake Mushroom Lentinula Edodes Strain L-54

  • Hoi-Shan, Kwan;Hai-Lou, Xu
    • BMB Reports
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    • 제35권5호
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    • pp.465-471
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    • 2002
  • From fruiting bodies of L. edodes strain L-54, single-spore isolates (SSIs) were collected. Two parental types of L-54 were regenerated via monokaryotization. By means of random-amplified polymorphic DNA (RAPD), DNA samples from L-54, its two parental types, and 32 SSIs were amplified with arbitrary primers. Dedikaryotization was demonstrated, and 91 RAPD-based molecular markers were generated. RAPD markers that were segregated at a 1:1 ratio were used to construct a linkage map of L. edodes. This RAPD-linkage map greatly enhanced the mapping of other inheritable and stable markers [such as those that are linked to a phenotype (the mating type), a known gene (priA) and a sequenced DNA fragment (MAT)] with the aid of mating tests, bulked-segregant analysis, and PCR-single-strand conformational polymorphism. These markers comprised a genetic map of L. edodes with 14 linkage groups and a total length of 622.4 cM.

기초연구의 분야별 산업연계구조 분석 (A Linkage Analysis between Research and Industry in Basic Research)

  • 송충한
    • 기술혁신학회지
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    • 제3권3호
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    • pp.113-124
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    • 2000
  • In the knowledge based economy, it's important to know the place where the proper knowledge locates as well as to produce the creative knowledge. This paper intends to clear up the linkage structure between research fields and its application areas. 2,135 proposals submitted to Korea Science and Engineering Foundation were analyzed to investigate the relationship between research fields and application areas. The results are as follows; first, 51.8% of the basic research is devoted to the advancement of knowledge, second, 40.8% of that is applicable to the industry, third, 5.8% and 1.2% of that contributes to environment and social welfare.

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Combined Genome Mapping of RFLP-AFLP-SSR in Pepper

  • Lee, Je Min;Kim, Byung-Dong
    • Genomics & Informatics
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    • 제1권2호
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    • pp.108-112
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    • 2003
  • We have constructed a molecular linkage map of pepper (Capsicum spp.) in an interspecific $F_2$ population of 107 plants with 320 RFLP, 136 AFLP, and 46 SSR markers. The resulting linkage map consists of 15 linkage groups covering 1,720 cM with an average map distance of 3.7 cM between framework markers. Most RFLP markers ($80\%$) were pepper-derived clones and these markers were evenly distributed all over the genome. Genes for defense and biosynthesis of carotenoids and capsaicinoids were mapped on this linkage map. By using 30 primer combinations, AFLP markers were generated in the $F_2$ population. For development of SSR markers in Capsicum, microsatellites were isolated from two small-insert genomic libraries and the GenBank database. This combined map provides a starting point for high-resolution QTL analysis, gene isolation, and molecular breeding.

SRM의 인덕턴스 및 쇄교자속 변화 특성 (Variable Characteristics of Inductance Profile and Flux Linkage for SRM)

  • 최경호;백원식;김동희;김민회
    • 대한전기학회:학술대회논문집
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    • 대한전기학회 2001년도 춘계학술대회 논문집 전기기기 및 에너지변환시스템부문
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    • pp.156-159
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    • 2001
  • This Paper analysis variable characteristics of inductance profiles and basic magnetic fields for Switched Reluctance Motors(SRM). The varying Inductance and flux linkage on operating control condition are very important for developing control algorithm and SRM accurate drive system. Therefore, we have analytical model for varying inductance and flux linkage with simulation and experimental mothed, and to find an analytical expression for the SRM coenergy. There are shown some good results that comparison of simulated and analytical inductance, flux linkage and current waves.

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Analysis of a Linkage Coil for Wireless Power Transmission by Inductive Coupling

  • Gimm, Youn-Myoung;Yoo, Ho-Sang;Kim, Myoung-Wha;Yoo, Jae-Sung
    • Journal of electromagnetic engineering and science
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    • 제8권1호
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    • pp.23-27
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    • 2008
  • Magnetic coupling delivering wireless power in capsular endoscope(CE) is described in this paper. The characteristic of the magnetic flux linkage coil which generates the induced electromotive force(emf) under the magnetic field was analyzed. With the analyzed results, a magnetic flux linkage coil system was developed and tested. It was confirmed that the magnetic flux linkage coil system could supply more than 50 mW power at 125 kHz without changing the structure of conventional CE.

Linkage Mapping and QTL on Chromosome 6 in Hanwoo (Korean Cattle)

  • Kim, J.W.;Park, S.I.;Yeo, J.S.
    • Asian-Australasian Journal of Animal Sciences
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    • 제16권10호
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    • pp.1402-1405
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    • 2003
  • The QTL(quantitative traits loci) linkage mapping of Hanwoo (Korean Cattle) chromosome 6 for daily gain and marbling score was performed using 378 individuals from 18 paternal half-sib families in Hanwoo. Hanwoo chromosome 6 were mapped to total length of 394.2 cM between 28 microsatellite loci using 36 microsatellite primers of BTA 6 linkage group. The QTL analysis for daily gain in Hanwoo showed 8 microsatellite loci (BM3026-5.66, EL03-5.58, BM4311-5.29, ILSTS035-4.50, BMS1242-4.37, BM1329-3.67, BM415-3.11, BMS2460-3.03) in larger than LOD score 3.0. Based on the QTL analysis for marbling score, LOD scores of 12 microsatellite loci (BM415-8.88, BM3026-7.15, ILSTS093-5.45, ILSTS035-4.91, EL03-4.69, BMS690-4.52, BM1329-4.43, BMS511-3.74, BMS1242-3.66, BMS518-3.65, BM4311-3.41, BMC4203-3.36) were found larger than 3.0.

불가사리 채집용 4절 링크 매니퓰레이터의 최적 설계 (Optimal Design of a Four-bar Linkage Manipulator for Starfish-Capture Robot Platform)

  • 김지훈;진상록;김종원;서태원;김종원
    • 한국정밀공학회지
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    • 제30권9호
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    • pp.961-968
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    • 2013
  • In this paper, we propose an optimal design for starfish capturing manipulator module with four-bar linkage mechanism. A tool link with compliance is attached on the four-bar linkage, and the tool repeats detaching starfish from the ground and putting it into the storage box. Since the tool is not rigid and the manipulator is operating underwater, the trajectory of the tool tip is determined by its dynamics as well as kinematics. We analyzed the trajectory of the manipulator tool tip by quasi-static analysis considering both kinematics and dynamics. In optimization, the lengths of each link and the tool stiffness are considered as control variables. To maximize the capturing ability, capturing stroke of the four-bar manipulator trajectory is maximized. Reaction force and reaction moment, and other kinematic constraints were considered as inequality constraints.

PSO를 이용한 테오얀센 기반의 보행로봇 다리설계 (Design of Leg Length for a Legged Walking Robot Based on Theo Jansen Using PSO)

  • 김선욱;김동헌
    • 한국지능시스템학회논문지
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    • 제21권5호
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    • pp.660-666
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    • 2011
  • 본 논문에서는 절 기구(bar linkage)형 다관절 보행로봇(multi-legged walking robot)의 최적다리 길이선정을 위하여 입자군집 최적화(PSO: Particle Swarm Optimization) 기법을 사용하였다. PSO 알고리즘을 적용하기 위해서 제안한 보행로봇의 기구학적인 해석이 필요하다. 게 로봇은 4절 링크 이론(four-bar linkage)과 얀센 메커니즘(Jansen mechanism)을 기반으로 설계되었다. 이러한 기구학적인 해석을 바탕으로 로봇의 보행보폭을 정의한다. 그리고 PSO의 학습 및 군집 특성을 이용하여 최대의 보행보폭을 가지는 10개(EA)의 링크(link)길이를 구한다. 시뮬레이션을 통해 각 링크의 위치와 다리 끝단의 보행보폭을 확인할 수 있다. 결과로서, PSO기법이 절 기구형 다관절 보행로봇의 최적다리 길이 선정에 효율적임을 보여 준다.