1 |
Blott, S., J. J. Kim, S. Moisio, A. Schmidt-Kuntzel, A. Cornet, P. Berzi, N. Cambisano, C. Ford, B. Grisart, D. Johnson, L. Karim, P. Simon, R. Snell, R. Spelman, J. Wong, J. Vilkki, M. Georges, F. Farnir, and W. Coppieters. 2003. Molecular dissection of a quantitative trait locus: a phenylalanine-totyrosine substitution in the transmembrane domain of the bovine growth hormone receptor is associated with a major effect on milk yield and composition. Genetics 163:253-266.
|
2 |
Cierco-Ayrolles, C., S. Dejean, A. Legarra, H. Gilbert, T. Druet, F. Ytournel, D. Estivals, N. Oumouhou, and B. Mangin. 2010. Does probabilistic modelling of linkage disequilibrium evolution improve the accuracy of QTL location in animal pedigree? Genet. Sel. Evol. 42:38.
DOI
ScienceOn
|
3 |
Matukumalli, L. K., C. T. Lawley, R. D. Schnabel, J. F. Taylor, M. F. Allan, M. P. Heaton, J. O'Connell, S. S. Moore, T. P. L. Smith, T. S. Sonstegard, and C. P. Van Tassell. 2009. Development and characterization of a high density SNP genotyping assay for cattle. PloS One 4(4):e5350.
DOI
ScienceOn
|
4 |
McClure, M. C., N. S. Morsci, R. D. Schnabel, J. W. Kim, P. Yao, M. M. Rolf, S. D. McKay, S. J. Gregg, R. H. Chapple, S. L. Northcutt, and J. F. Taylor. 2010. A genome scan for quantitative trait loci influencing carcass, post-natal growth and reproductive traits in commercial Angus cattle. Anim. Genet. 41:597-607.
DOI
ScienceOn
|
5 |
Meuwissen, T. H. E., B. J. Hayes, and M. E. Goddard. 2001. Prediction of total genetic value using genome-wide dense marker maps. Genetics 157:1819-1829.
|
6 |
Meuwissen, T. H. and M. E. Goddard. 2001. Prediction of identity by descent probabilities from marker-haplotypes. Genet. Sel. Evol. 33:605-634.
DOI
ScienceOn
|
7 |
Misztal, I. 2011. FAQ for genomic selection. J. Anim. Breed. Genet. 128:245-246.
DOI
ScienceOn
|
8 |
Mizoshita, K., A. Takano, T. Watanabe, A. Takasuga, and Y. Sugimoto. 2005. Identification of a 1.1-Mb region for a carcass weight QTL onbovine Chromosome 14. Mamm. Genome 16:532-537.
DOI
|
9 |
Mizoshita, K., T. Watanabe, H. Hayashi, C. Kubota, H. Yamakuchi, J. Todoroki, and Y. Sugimoto. 2004. Quantitative trait loci analysis for growth and carcass traits in a half-sib family of purebred Japanese Black (Wagyu) cattle. J. Anim. Sci. 82:3415-3420.
DOI
|
10 |
Morris, C. A., W. S. Pitchford, N. G. Cullen, A. K. Esmailizadeh, S. M. Hickey, D. Hyndman, K. G. Dodds, R. A. Afolayan, A. M. Crawford, and C. D. K. Bottema. 2009. Quantitative trait loci for live animal and carcass composition traits in Jersey and Limousin back-cross cattle finished on pasture or feedlot. Anim. Genet. 40:648-654.
DOI
ScienceOn
|
11 |
NIAS. 2009. Annual Research Report http://www.nias.go.kr/ Accessed August 24, 2011.
|
12 |
Perez-Enciso, M. and I. Misztal. 2011. Qxpak.5: Old mixed model solutions for new genomics problems. BMC Bioinformatics 12:202.
DOI
|
13 |
Sun, X., D. Habier, R. L. Fernando, D. J. Garrick, and J. C. M. Dekkers. 2011. Genomic breeding value prediction and QTL mapping of QTLMAS2010 data using Bayesian Methods. BMC Proceedings 5(Suppl 3):S13.
|
14 |
Stone, R. T., J. W. Keele, S. D. Shackelford, S. M. Kappes, and M. Koohmaraie. 1999. A primary screen of the bovine genome for quantitative trait loci affecting carcass and growth traits. J. Anim. Sci.77:1379-1384.
DOI
|
15 |
Uleberg, E. and T. H. E. Meuwissen. 2010. Fine mapping and detection of the causative mutation underlying quantitative trait loci. J. Anim. Breed. Genet. 127:404-410.
DOI
ScienceOn
|
16 |
Xu, S. 2003. Estimating polygenic effects using markers of the entire genome. Genetics 163:789-801.
|
17 |
Xu, S. 2003. Theoretical basis of the Beavis effect. Genetics 165:2259-2268.
|
18 |
Zhao, H. H., R. L. Fernando, and J. C. M. Dekkers. 2007. Power and precision of alternate methods for linkage disequilibrium mapping of quantitative trait loci. Genetics 175:1975-1986.
DOI
ScienceOn
|
19 |
Druet, T. and M. Georges. 2010. A hidden markov model combining linkage and linkage disequilibrium information for haplotype reconstruction and quantitative trait locus fine mapping. Genetics 184:789-798.
DOI
|
20 |
Daetwyler, H. D., R. Pong-Wong, B. Villanueva, and J. A. Woolliams. 2010. The impact of genetic architecture on genome-wide evaluation methods. Genetics 185:1021-1031.
DOI
|
21 |
Erbe, M., F. Ytournel, E. C. G. Pimentel, A. R. Sharifi, and H. Simianer. 2011. Power and robustness of three whole genome association mapping approaches in selected populations. J. Anim. Breed. Genet. 128:3-14.
DOI
ScienceOn
|
22 |
Fernando, R. L. and D. Garrick. 2013. Bayesian methods applied to GWAS. Methods Mol. Biol. 1019:237-274.
DOI
ScienceOn
|
23 |
Fernando, R. L., D. Nettleton, B. R. Southey, J. C. M. Dekkers, M. F. Rothschild, and M. Soller. 2004. Controlling the proportion of false positives in multiple dependent tests. Genetics 166:611-619.
DOI
|
24 |
Garrick, D. J. 2011. The nature, scope and impact of genomic prediction in beef cattle in the United States. Genet. Sel. Evol. 43:17.
DOI
ScienceOn
|
25 |
Grapes, L., J. C. M. Dekkers, M. F. Rothschild, and R. L. Fernando. 2004. Comparing linkage disequilibrium-based methods for fine mapping quantitative trait loci. Genetics 166:1561-1570.
DOI
|
26 |
Habier, D., R. L. Fernando, K. Kizilkaya, and D. J. Garrick. 2011. Extension of the bayesian alphabet for genomic selection. BMC Bioinformatics 12:186.
DOI
|
27 |
Li, C., J. Basarab, W. M. Snelling, B. Benkel, J. Kneeland, B. Murdoch, C. Hansen, and S. S. Moore. 2004. Identification and fine mapping of quantitative trait loci for backfat on bovine chromosomes 2, 5, 6, 19, 21, and 23 in a commercial line of Bos taurus. J. Anim. Sci. 82:967-972.
DOI
|
28 |
Hoggart, C. J., J. C. Whittaker, M. De Iorio, and D. J. Balding. 2008. Simultaneous analysis of all SNPs in genome-wide and re-sequencing association studies. PLoS Genet. 4(7):e1000130.
DOI
ScienceOn
|
29 |
Kim, J. J. and M. Georges. 2002. Evaluation of a new finemapping method exploiting linkage disequilibrium: A case study analysing a QTL with major effect on milk composition on bovine chromosome 14. Asian Australas. J. Anim. Sci. 15:1250-1256.
DOI
|
30 |
Lee, Y. S., J. H. Lee, J. Y. Lee, J. J. Kim, H. S. Park, and J. S. Yeo.2008. Identification of candidate SNP (single nucleotide polymorphism) for growth and carcass traits related to QTL on chromosome 6 in Hanwoo (Korean Cattle). Asian Australas. J. Anim. Sci. 21:1703-1709.
DOI
|
31 |
Li, Y. 2012. Genome-wide association study to identify QTLfor growth and carcass quality traits in Korean native cattle, Hanwoo. Ph.D. Thesis, Yeungnam University, Gyeongsan, Gyeongbuk, Korea.
|
32 |
Li, Y., J. H. Lee, Y. M. Lee, and J. J. Kim.2011. Application of linkage disequilibrium mapping methods to detect QTL for carcass quality on chromosome 6 using a high density SNP map in Hanwoo. Asian Australas. J. Anim. Sci. 24:457-462.
DOI
ScienceOn
|
33 |
MacLeod, I. M., B. J. Hayes, K. W. Savin, A. J. Chamberlain, H. C. McPartlan, and M. E. Goddard. 2010. Power of a genome scan to detect and locate quantitative trait loci in cattle using dense single nucleotide polymorphisms. J. Anim. Breed. Genet. 127:133-142.
DOI
ScienceOn
|