• Title/Summary/Keyword: Linear mixed models

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Genetic parameters of milk and lactation curve traits of dairy cattle from research farms in Thailand

  • Pangmao, Santi;Thomson, Peter C.;Khatkar, Mehar S.
    • Animal Bioscience
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    • v.35 no.10
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    • pp.1499-1511
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    • 2022
  • Objective: This study was aimed to estimate the genetic parameters, including genetic and phenotypic correlations, of milk yield, lactation curve traits and milk composition of Thai dairy cattle from three government research farms. Methods: The data of 25,789 test-day milk yield and milk composition records of 1,468 cattle from lactation 1 to 3 of Holstein Friesian (HF) and crossbred HF dairy cattle calved between 1990 and 2015 from three government research farms in Thailand were analysed. 305-day milk yield was estimated by the Wood model and a test interval method. The Wood model was used for estimating cumulative 305-day milk yield, peak milk yield, days to peak milk yield and persistency. Genetic parameters were estimated using linear mixed models with herd, breed group, year and season of calving as fixed effects, and animals linked to a pedigree as random effects, together with a residual error. Univariate models were used to estimate variance components, heritability, estimated breeding values (EBVs) and repeatability of each trait, while pairwise bivariate models were used to estimate covariance components and correlations between traits in the same lactation and in the same trait across lactations. Results: The heritability of 305-day milk yield, peak milk yield and protein percentage have moderate to high estimates ranging from 0.19 to 0.45 while days to peak milk yield, persistency and fat percentage have low heritability ranging from 0.08 to 0.14 in lactation 1 cows. Further, heritability of most traits considered was higher in lactation 1 compared with lactations 2 and 3. For cows in lactation 1, high genetic correlations were found between 305-day milk yield and peak milk yield (0.86±0.07) and days to peak milk yield and persistency (0.99±0.02) while estimates of genetic correlations between the remaining traits were imprecise due to the high standard errors. The genetic correlations within the traits across lactation were high. There was no consistent trend of EBVs for most traits in the first lactation over the study period. Conclusion: Both the Wood model and test interval method can be used for milk yield estimates in these herds. However, the Wood model has advantages over the test interval method as it can be fitted using fewer test-day records and the estimated model parameters can be used to derive estimates of other lactation curve parameters. Milk yield, peak milk yield and protein percentage can be improved by a selection and mating program while days to peak milk yield, persistency and fat percentage can be improved by including into a selection index.

Word-boundary and rate effects on upper and lower lip movements in the articulation of the bilabial stop /p/ in Korean

  • Son, Minjung
    • Phonetics and Speech Sciences
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    • v.10 no.1
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    • pp.23-31
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    • 2018
  • In this study, we examined how the upper and lower lips articulate to produce labial /p/. Using electromagnetic midsagittal articulography, we collected flesh-point tracking movement data from eight native speakers of Seoul Korean (five females and three males). Individual articulatory movements in /p/ were examined in terms of minimum vertical upper lip position, maximum vertical lower lip position, and corresponding vertical upper lip position aligned with maximum vertical lower lip position. Using linear mixed-effect models, we tested two factors (word boundary [across-word vs. within-word] and speech rate [comfortable vs. fast]) and their interaction, considering subjects as random effects. The results are summarized as follows. First, maximum lower lip position varied with different word boundaries and speech rates, but no interaction was detected. In particular, maximum lower lip position was lower (e.g., less constricted or more reduced) in fast rate condition and across-word boundary condition. Second, minimum lower lip position, as well as lower lip position, measured at the time of maximum lower lip position only varied with different word boundaries, showing that they were consistently lower in across-word condition. We provide further empirical evidence of lower lip movement sensitive to both different word boundaries (e.g., linguistic factor) and speech rates (e.g., paralinguistic factor); this supports the traditional idea that the lower lip is an actively moving articulator. The sensitivity of upper lip movement is also observed with different word boundaries; this counters the traditional idea that the upper lip is the target area, which presupposes immobility. Taken together, the lip aperture gesture is a good indicator that takes into account upper and lower lip vertical movements, compared to the traditional approach that distinguishes a movable articulator from target place. Respective of different speech rates, the results of the present study patterned with cross-linguistic lenition-related allophonic variation, which is known to be more sensitive to fast rate.

A Study on Acute Effects of Fine Particles on Pulmonary Function of Schoolchildren in Beijing, China

  • Kim, Dae-Seon;Yu, Seung-Do;Cha, Jung-Hoon;Ahn, Seung-Chul
    • Proceedings of the Korean Environmental Health Society Conference
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    • 2004.06a
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    • pp.193-196
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    • 2004
  • To evaluate the acute effects of fine particles on pulmonary function, a longitudinal study was conducted. This study was carried out for the schoolchildren (3rd and 6th grades) living in Beijing, China. Children were asked to record their daily levels of peak expiratory flow rate using portable peak flow meter (mini-Wright) for 40 days. The relationship between daily PEFR and fine particle levels was analyzed using a mixed linear regression models including gender, height, the presence of respiratory symptoms, and daily average temperature and relative humidity as extraneous variables. The total number of students participating in this longitudinal study was 87. Daily measured PEFR was in the range of $253{\sim}501L/min$. On the daily basis, a PEFR measured in the morning was shown to be lower than that measured in the evening (or afternoon). The daily mean concentrations of $PM_{10}$ and $PM_{2.5}$ over the study period were $180.2\;{\mu}g/m^3$ and $103.2\;{\mu}g/m^3$, respectively. The IQR (inter-quartile range) of $PM_{10}$ and $PM_{2.5}$ were $91.8\;{\mu}g/m^3$ and $58.0\;{\mu}g/m^3$. Daily mean PEFR was regressed with the 24-hour average $PM_{10}$ (or $PM_{2.5}$) levels, weather information such as air temperature and relative humidity, and individual characteristics including gender, height, and respiratory symptoms. The analysis showed that the increase of fine particle concentrations was negatively associated with the variability in PEFR. The IQR increments of $PM_{10}$ or $PM_{2.5}$ (at 1-day time lag) were also shown to be related with 1.54L/min (95% Confidence intervals -2.14, -0.94) and 1.56L/min (95% CI -2.16, -0.95) decline in PEFR.

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A Study on Acute Effects of Ambient Air Particles on Pulmonary Function of Schoolchildren in Ulsan

  • Yu, Seung-Do;Kim, Dae-Seon;Cha, Jung-Hoon;Ahn, Seung-Chul;Lee, Jong-Tae
    • Proceedings of the Korean Environmental Health Society Conference
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    • 2003.06a
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    • pp.183-186
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    • 2003
  • To evaluate the effect of air pollution on respiratory health in children, we conducted a longitudinal study in which children were asked to record their daily levels of peak expiratory flow rate using potable peak flow meter (mini-Wright) far 4 weeks. The relationship between daily PEFR and ambient air particle levels was analyzed using a mixed linear regression models including gender, age in you, weight, the presence of respiratory symptoms, and relative humidity as an extraneous variable. The daily mean concentrations of PM$\_$10/ and PM$\_$2.5/ over the study period were 64.9$\mu\textrm{g}$/㎥ and 46. l$\mu\textrm{g}$/㎥, respectively. The range of daily measured PEFR in this study was 170-481 l/min. Daily mean PEFR was regressed with the 24-hour. average PM$\_$10/ (or PM$\_$2.5/) levels, weather information such as air temperature and relative humidity, and individual characteristics including sex, weight, and respiratory symptoms. The analysis showed that the increase of air particle concentrations was negatively associated with the variability in PEFR. We estimated that the IQR increment of PM$\_$10/ or PM$\_$2.5/ were associated with 1.5 l/min (95% Confidence intervals -3.1, 0.1) and 0.8 l/min (95% Cl -1.8, 0.1) decline in PEFR. Even though this study shows negative findings on the relationship between respiratory function and air particles, it is worth noting that the findings must be interpreted cautiously because exposure measurement based on monitoring of ambient air likely results in misclassification of true exposure levels and this is the first Korean study that PM$\_$2.5/ measurement is applied as an index of air particle quality.

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Disparity in opinions on lip protrusiveness in contemporary African American faces

  • Battle, Yvette;Schneider, Monica;Magder, Laurence;Pae, Eung-Kwon
    • The korean journal of orthodontics
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    • v.48 no.1
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    • pp.23-29
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    • 2018
  • Objective: In accordance with the changing demographics in the United States, orthodontists working on various ethnic populations should be more conscious when using the standardized profile analyses for the African American patient. The objective of this study was to examine whether the perception of lip protrusiveness in modern African American faces has changed. For this purpose, we investigated the most favorable African American lip profile using the opinions of 10 experienced and 10 newly trained younger orthodontists. Methods: Attractiveness was converted to a number on visualized analog scales. Comparative ranks on 16 African American profiles, with focus on lip protrusiveness and thickness, were made among the groups. Mixed-effects linear regression models were fit and group differences were estimated. Results: Younger orthodontists favored a more protrusive lip profile, and the variance in their perceptions was narrower than those of older orthodontists. Measurements related to upper lip protrusion showed the strongest correlation to attractiveness (r = -0.82). The association with attractiveness decreased linearly as the protrusiveness of the upper lip increased. Steiner's E-line was the most influential reference for determining the level of attractiveness for the older orthodontists, whereas upper lip protrusion was the most influential factor for the young orthodontists. Conclusions: An adequate level of lip protrusiveness and thickness should be essential for maintaining attractive esthetics in African American patients. Yet, a new set of standards for prominent lips in this population is necessary to reflect the current trend in the concept of a beautiful face in the modern world.

Physical Activity- and Alcohol-dependent Association Between Air Pollution Exposure and Elevated Liver Enzyme Levels: An Elderly Panel Study

  • Kim, Kyoung-Nam;Lee, Hyemi;Kim, Jin Hee;Jung, Kweon;Lim, Youn-Hee;Hong, Yun-Chul
    • Journal of Preventive Medicine and Public Health
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    • v.48 no.3
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    • pp.151-169
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    • 2015
  • Objectives: The deleterious effects of air pollution on various health outcomes have been demonstrated. However, few studies have examined the effects of air pollution on liver enzyme levels. Methods: Blood samples were drawn up to three times between 2008 and 2010 from 545 elderly individuals who regularly visited a community welfare center in Seoul, Korea. Data regarding ambient air pollutants (particulate matter ${\leq}2.5{\mu}m$ [$PM_{2.5}$], nitrogen dioxide [$NO_2$], ozone [$O_3$], carbon monoxide, and sulfur dioxide) from monitoring stations were used to estimate air pollution exposure. The effects of the air pollutants on the concentrations of three liver enzymes (aspartate aminotransferase [AST], alanine aminotransferase [ALT], and ${\gamma}$-glutamyltranspeptidase [${\gamma}$-GTP)]) were evaluated using generalized additive and linear mixed models. Results: Interquartile range increases in the concentrations of the pollutants showed significant associations of $PM_{2.5}$ with AST (3.0% increase, p=0.0052), ALT (3.2% increase, p=0.0313), and ${\gamma}$-GTP (5.0% increase, p=0.0051) levels; $NO_2$ with AST (3.5% increase, p=0.0060) and ALT (3.8% increase, p=0.0179) levels; and $O_3$ with ${\gamma}$-GTP (5.3% increase, p=0.0324) levels. Significant modification of these effects by exercise and alcohol consumption was found (p for interaction <0.05). The effects of air pollutants were greater in non-exercisers and heavy drinkers. Conclusions: Short-term exposure to air pollutants such as $PM_{2.5}$, $NO_2$, and $O_3$ is associated with increased liver enzyme levels in the elderly. These adverse effects can be reduced by exercising regularly and abstinence from alcohol.

Generalized Linear Mixed Model for Multivariate Multilevel Binomial Data (다변량 다수준 이항자료에 대한 일반화선형혼합모형)

  • Lim, Hwa-Kyung;Song, Seuck-Heun;Song, Ju-Won;Cheon, Soo-Young
    • The Korean Journal of Applied Statistics
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    • v.21 no.6
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    • pp.923-932
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    • 2008
  • We are likely to face complex multivariate data which can be characterized by having a non-trivial correlation structure. For instance, omitted covariates may simultaneously affect more than one count in clustered data; hence, the modeling of the correlation structure is important for the efficiency of the estimator and the computation of correct standard errors, i.e., valid inference. A standard way to insert dependence among counts is to assume that they share some common unobservable variables. For this assumption, we fitted correlated random effect models considering multilevel model. Estimation was carried out by adopting the semiparametric approach through a finite mixture EM algorithm without parametric assumptions upon the random coefficients distribution.

The Effect of Current Perception Threshold and Pain Threshold through Transcutaneous Electrical Nerve Stimulation and Silver Spike Point Therapy (TENS와 SSP가 전류지각역치 및 통증역치에 미치는 효과)

  • Yun, Mi-Jung;Lee, Wan-Hee
    • The Journal of Korean Physical Therapy
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    • v.23 no.2
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    • pp.53-59
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    • 2011
  • Purpose: This study was designed to compare the effects of transcutaneous electrical nerve stimulation (TENS) and silver spike point (SSP) therapy on current perception threshold (CPT) and mechanical pain threshold (MPT). Methods: Forty-five healthy adult male and female subjects were studied. Fourteen of them were males and twenty-one were females. Subject were randomly assigned to receive; (1) TENS (80/120 Hz alternating frequency), (2) SSP (3 Hz), or (3) no treatment (control group). Electric stimulation was applied over LI4 and LI11 on acupuncture points of the left forearm for 30 minutes. CPT and MPT were recorded before and after electrical stimulation. The data were analyzed using linear mixed models, with group treated as a between subject factor and time a within-subject factor. Results: At 30 minutes after cessation of electrical stimulation the CPT of C fibers and A${\delta}$fibers was reduced in the TENS group that of C fibers was reduced in the SSP group (p<0.05). After cessation of electrical stimulation, the MPT of C fibers and A${\delta}$fibers increased in the TENS group, and that of A${\delta}$fibers increased in the SSP group (p<0.05). Conclusion: After TENS and SSP stimulation, MPT of C fibers and A${\delta}$fibers were selectively increased. In particular, the TENS group showed increases in both C and A${\delta}$fibers, while the SSP group showed increases only in A${\delta}$fibers.

Residential Mobility and Housing Preference of Daegu Metropolitan City (대구시민의 주거이동 요인과 주택선호성향 분석)

  • Im, Jun-Hong;Kim, Han-Soo;Song, Heung-Soo
    • Journal of the Korean housing association
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    • v.25 no.4
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    • pp.93-100
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    • 2014
  • The purpose of this study, analyzing the primary factors for residential mobility and housing preference of Daegu citizens, is to provide a basic data for future housing policies. The results are as follows: First, 32.1% of Daegu citizens have intention of residential mobility. Especially the residents in central (50.0%), southern (59.0%) and western Daegu showed more intention than those in other districts. Second, we used the GLMM (Generalized Linear Mixed Models) to analyze the main factors for residential mobility. The results are as follows; 1) the residents who have lower housing satisfaction with the type of housing, parking, and educational environment, 2) those who are male and younger, 3) those who live in rented house have more intention of housing mobility. Third, based on the analysis on the preference change of the type of housing, the preference of the apartments is getting higher, while that of the detached houses is getting lower (past: 40.1%${\rightarrow}$present: 54.8%${\rightarrow}$future: 66.7%). 28.8% of the respondents (444) expressed intention to live in the public rental houses, in case they are provided in the areas they are moving to. Fourth, when we analyzed the size of the houses they actually lived in and that of the houses they prefer to live in case of moving, we found that in general they tend to move in smaller housing than in the past. The results of the analysis showed that in order to minimize the possible moving away from the current residential areas due to the dissatisfaction with the housing environment, in the first place the improvement in the quality of the houses, parking and education environment is needed.

Numerical Analysis for the Characteristic Investigation of Homogenization Techniques Used for Equivalent Material Properties of Functionally Graded Material (기능경사 소재 등가 물성치 예측을 위한 균질화 기법의 특성분석을 위한 수치해석)

  • Cho, Jin-Rae;Choi, Joo-Hyoung;Shin, Dae-Sub
    • Journal of the Computational Structural Engineering Institute of Korea
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    • v.21 no.1
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    • pp.13-20
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    • 2008
  • Graded layers in which two different constituent particles are mixed are inserted into functionally graded material such that the volume fractions of constituent particles vary continuously and functionally over the entire material domain. The material properties of this dual-phase graded region, which is essential for the numerical analysis of the thermo-mechanical behavior of FGM, have been predicted by traditional homogenization methods. But, these methods are limited to predict the global equivalent material properties of FGMs because the detailed geometry information such as the particel shape and the dispersion structure is not considered. In this context, this study intends to investigate the characteristics of these homogenization methods through the finite element analysis utilizing the discrete micromechanics models of the graded layer, for various volume fractions and external loading conditions.