• Title/Summary/Keyword: Line-Clustering

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Screening for MiRNAs Related to Laryngeal Squamous Carcinoma Stem Cell Radiation

  • Huang, Chang-Xin;Zhu, Ying;Duan, Guang-Liang;Yao, Ji-Fen;Li, Zhao-Yang;Li, Da;Wang, Qing-Qing
    • Asian Pacific Journal of Cancer Prevention
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    • v.14 no.8
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    • pp.4533-4537
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    • 2013
  • Objective: To use microarray chip technology for screening of stem cell radiation related miRNAs in laryngeal squamous cell carcinoma; study and explore the relationship of miRNAs with radiosensitivity of laryngeal squamous cells. Method: After conventional culture and amplification of the laryngeal squamous carcinoma cell line Hep-2, CD 133+ cells were screened out with combination of isolated culture of stem cell microspheres and FACS for preparation of laryngeal cancer stem cells. After radiation treatment, miRNAs of laryngeal squamous carcinoma stem cells before and after radiation were enriched and purified. After microarray hybridization with mammalian miRNA and scanning of fluorescence signal, the miRNAs of laryngeal squamous carcinoma stem cells before and after radiation was subject to differential screening and clustering analysis. Real-time quantitative RT-PCR was used to verify part of the differentially expressed miRNAs. Results: 70 miRNAs related to laryngeal cancer stem cell radiation with 2-fold difference in expression were screened out, in which 62 were down-regulated and 8 were up-regulated. Fluorescent quantitative RT-PCR results were consistent with miRNAs chip results. Conclusion: Some miRNAs may be involved in self-regulation with laryngeal squamous carcinoma stem cell radiation.

Discrimination of Korean Native Chicken Lines Using Fifteen Selected Microsatellite Markers

  • Seo, D.W.;Hoque, M.R.;Choi, N.R.;Sultana, H.;Park, H.B.;Heo, K.N.;Kang, B.S.;Lim, H.T.;Lee, S.H.;Jo, C.;Lee, J.H.
    • Asian-Australasian Journal of Animal Sciences
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    • v.26 no.3
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    • pp.316-322
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    • 2013
  • In order to evaluate the genetic diversity and discrimination among five Korean native chicken lines, a total of 86 individuals were genotyped using 150 microsatellite (MS) markers, and 15 highly polymorphic MS markers were selected. Based on the highest value of the number of alleles, the expected heterozygosity (He) and polymorphic information content (PIC) for the selected markers ranged from 6 to 12, 0.466 to 0.852, 0.709 to 0.882 and 0.648 to 0.865, respectively. Using these markers, the calculated genetic distance (Fst), the heterozygote deficit among chicken lines (Fit) and the heterozygote deficit within chicken line (Fis) values ranged from 0.0309 to 0.2473, 0.0013 to 0.4513 and -0.1002 to 0.271, respectively. The expected probability of identity values in random individuals (PI), random half-sib ($PI_{half-sibs}$) and random sibs ($PI_{sibs}$) were estimated at $7.98{\times}10^{-29}$, $2.88{\times}10^{-20}$ and $1.25{\times}10^{-08}$, respectively, indicating that these markers can be used for traceability systems in Korean native chickens. The unrooted phylogenetic neighbor-joining (NJ) tree was constructed using 15 MS markers that clearly differentiated among the five native chicken lines. Also, the structure was estimated by the individual clustering with the K value of 5. The selected 15 MS markers were found to be useful for the conservation, breeding plan, and traceability system in Korean native chickens.

Analysis of Gene Eexpression Pattern of Ailanthus altissima Extract and Gleevec on K-562 Leukemia Cell Line (K-562 백혈병 세포주에서 저근백피와 Gleevec을 처리에 의한 유전자 발현 비교 분석)

  • Cha, Min-Ho;An, Won-Gun;Jeon, Byung-Hun;Yun, Yong-Gab;Yoon, Yoo-Sik
    • Journal of Physiology & Pathology in Korean Medicine
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    • v.19 no.4
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    • pp.913-921
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    • 2005
  • In this study, we investigated gene expression patterns induced by Ailanthus altissima extract and compared it with Gleevec, a well-known anti-leukemia drug, in K562 chromic leukemia cells. Ailanthus altissima extract(100 ug/ml) and Gleevec(50 ug/ml) were treated to cells for 1h, 2h, 4h, and 16h and total RNA was extracted. Gene expressions were evaluated using cDMA microarray, in which 24,000 genes were spotted. Hierarchical clustering analysis showed that expression of genes included in two clusters were increased or decreased time dependently by both Ailanthus altissima extract and Gleevec. Genes included in another cluster were induced by Ailanthus altissima extract but not by Gleevec. In biological process analysis, expression of genes involved in apoptosis, growth arrest and DNA-damage were increased, but genes stimulating cell cycle were decreased. This study provides comprehensive comparison of the patterns of gene expression changes induced by Ailanthus altissima extract and Gleevec in K-562 leukemia cells.

Ape1/Ref-1 Stimulates GDNF/GFR ${\alpha}$ 1-mediated Downstream Signaling and Neuroblastoma Proliferation

  • Kang, Mi-Young;Kim, Kweon-Young;Yoon, Young;Kang, Yoon-Sung;Kim, Hong-Beum;Youn, Cha-Kyung;Kim, Dong-Hui;Kim, Mi-Hwa
    • The Korean Journal of Physiology and Pharmacology
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    • v.13 no.5
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    • pp.349-356
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    • 2009
  • We previously reported that glial cell line-derived neurotropic factor (GDNF) receptor ${\alpha}$ 1 (GFR ${\alpha}$ 1) is a direct target of apurinic/apyrimidinic endonuclease 1 (Ape1/Ref-1). In the present study, we further analyzed the physiological roles of Ape1/Ref-1-induced GFR ${\alpha}$ 1 expression in Neuro2a mouse neuroblastoma cells. Ape1/Ref-1 expression caused the clustering of GFR ${\alpha}$ 1 immunoreactivity in lipid rafts in response to GDNF. We also found that Ret, a downstream target of GFR ${\alpha}$ 1, was functionally activated by GDNF in Ape1/Ref-1-expressing cells. Moreover, GDNF promoted the proliferation of Ape1/Ref-1-expressing Neuro2a cells. Furthermore, GFR ${\alpha}$ 1-specific RNA experiments demonstrated that the downregulation of GFR ${\alpha}$ 1 by siRNA in Ape1/Ref-1-expressing cells impaired the ability of GDNF to phosphorylate Akt and PLC ${\gamma}$-1 and to stimulate cellular proliferation. These results show an association between Ape1/Ref-1 and GDNF/GFR ${\alpha}$ signaling, and suggest a potential molecular mechanism for the involvement of Ape1/Ref-1 in neuronal proliferation.

Function Approximation for accelerating learning speed in Reinforcement Learning (강화학습의 학습 가속을 위한 함수 근사 방법)

  • Lee, Young-Ah;Chung, Tae-Choong
    • Journal of the Korean Institute of Intelligent Systems
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    • v.13 no.6
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    • pp.635-642
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    • 2003
  • Reinforcement learning got successful results in a lot of applications such as control and scheduling. Various function approximation methods have been studied in order to improve the learning speed and to solve the shortage of storage in the standard reinforcement learning algorithm of Q-Learning. Most function approximation methods remove some special quality of reinforcement learning and need prior knowledge and preprocessing. Fuzzy Q-Learning needs preprocessing to define fuzzy variables and Local Weighted Regression uses training examples. In this paper, we propose a function approximation method, Fuzzy Q-Map that is based on on-line fuzzy clustering. Fuzzy Q-Map classifies a query state and predicts a suitable action according to the membership degree. We applied the Fuzzy Q-Map, CMAC and LWR to the mountain car problem. Fuzzy Q-Map reached the optimal prediction rate faster than CMAC and the lower prediction rate was seen than LWR that uses training example.

How to inflow the Fund for Initial Start-Up Companies using the On-Line Clustering Platform (초기 창업기업의 자금투자유치를 위한 온라인 클러스터링 플랫폼 연구)

  • Yoo, Soonduck;Choi, Kwangdon
    • The Journal of the Institute of Internet, Broadcasting and Communication
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    • v.15 no.3
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    • pp.181-189
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    • 2015
  • As a study on entrepreneurship and venture companies to support, this research is to find how to inflow the fund which is provided by private companies. This is to propose a shared platform for Information for connecting producers and consumers, corporate investors to help fund inflows to private companies and utilization of the enterprise information collected by government. Entrepreneurship support policies, as one of economy activation have a limit in the size of the support of the government therefore support continued growth through aggressive inflow of private funds is needed. It is significant to provide the environment that private funds could spill into the environment to provide for excellent start-up companies.

Text Detection and Recognition in Outdoor Korean Signboards for Mobile System Applications (모바일 시스템 응용을 위한 실외 한국어 간판 영상에서 텍스트 검출 및 인식)

  • Park, J.H.;Lee, G.S.;Kim, S.H.;Lee, M.H.;Toan, N.D.
    • Journal of the Institute of Electronics Engineers of Korea CI
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    • v.46 no.2
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    • pp.44-51
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    • 2009
  • Text understand in natural images has become an active research field in the past few decades. In this paper, we present an automatic recognition system in Korean signboards with a complex background. The proposed algorithm includes detection, binarization and extraction of text for the recognition of shop names. First, we utilize an elaborate detection algorithm to detect possible text region based on edge histogram of vertical and horizontal direction. And detected text region is segmented by clustering method. Second, the text is divided into individual characters based on connected components whose center of mass lie below the center line, which are recognized by using a minimum distance classifier. A shape-based statistical feature is adopted, which is adequate for Korean character recognition. The system has been implemented in a mobile phone and is demonstrated to show acceptable performance.

Hydrolysis of Phosphatidyicholine to Initiate HeLa Cell Adhesion to a Gelatin Substratum (Phosphatidylcholine의 분해에 의한 Hela 세포와 Gelatin 기질과의 상호작용의 유도)

  • ;;;;;Bruce S. Jacobson
    • The Korean Journal of Zoology
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    • v.38 no.4
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    • pp.457-464
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    • 1995
  • Hela cells, a transformed human epithelial cell line, attach to various substrata but subsequent spreading is specific to collagen or gelatin. The spreading is initiated by the activation of phospholipase $A_2$ (PLA$_2$) which produces arachidonic acid (AA) as a consequence of cell surface collagen receptor clustering. This study examines the mechanism of PLA$_2$activation and which phospholipids are hydrolyzed by PIA$_2$ to release AA in response to Hela cell adhesion to a gelatin substratum. The levels of phosphatidyicholine decreases, among various phospholipids, during attachment and spreading of Hela cells. Lysophosphatidyicholine Is the only lysophospholipids formed during ileLa cell adhesion indicating that clustered collagen receptors activate PLA$_2$to hydrolyze posphatidylcholine to AA and lysophosphatidylcholine. Among various molecular entitles which are known to regulate PLA$_2$ activation, we have previously shown that PLA2 activation is not mediated by either changes in $Ca_2$+ levels, alkalinization of cytoplasmic p11, or activation of protein hinase C. It is also likely that PIA2 activation is not mediated by either pertussis or cholera toxinsensitive G proteins as those toxins do not affect both AA release and cell spreading.

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A Study on Multichannel Selection according to Consumer's Price Sensitivity -Focusing on Fashion Products as Experience Goods and Digital Appliances as Search Goods- (소비자의 가격민감도에 따른 상품특성별 멀티채널 선택에 관한 연구 -경험재로서의 의류상품과 탐색재로서의 디지털 가전제품을 중심으로-)

  • Ahn, Hyun A;Kim, Chi Eun;Lee, Jin Hwa
    • Journal of the Korean Society of Clothing and Textiles
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    • v.40 no.6
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    • pp.967-978
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    • 2016
  • This study examines consumers' multi-channel choices in the search phase and purchasing phase stage according to price sensitivity and product characteristics in order to propose a multichannel strategy. For the research, one-way ANOVA, t-test, clustering analysis, and crosstabs are used for the descriptive analysis of 317 surveys on men and women conducted in 2014. The findings are as follows. First, consumers that both experience goods and search goods rely on surrounding advice as well as a search channel regardless of price sensitivity. Second, channel selection differs by price sensitivity when it comes to purchasing phase. Consumers with high price sensitivity tend to purchase from online channels; however, consumers with low price sensitivity tend to purchase from off line channels in cases of search goods. Meanwhile, cases of experience goods have no meaningful result. Third, consumers are divided into 3 groups by the tendency of channel selection. In case of experience goods, search channel choice is aligned with purchasing channel; however, search channel choice is not aligned with purchasing channel in search goods. This study provides clear information on fashion consumers' behavior on multi-channel choices compared to ones for search goods consumers on strategic strategies for fashion companies.

Parallel Optimal Power Flow Using PC Clustering (PC 클러스터링을 이용한 병렬 최적조류계산에 관한 연구)

  • Kim, Cheol-Hong;Mun, Kyeong-Jun;Kim, Hyung-Su;Park, J.H.;Kim, Jin-Ho;Lee, Hwa-Seok
    • Proceedings of the KIEE Conference
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    • 2004.11b
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    • pp.190-193
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    • 2004
  • Optimal Power Flow (OPF) is becoming more and more important in the deregulation environment of power pool and there is an urgent need of faster solution technique for on-line application. So this paper presents parallel genetic algorithm-tap search for the solution of the OPF. The control variables modeled unit active power outputs, generator-bus voltage magnitudes and transformer-tap settings. A number of functional operating constraints, such as branch flow limits, load bus boltage magnitude limits and generator reactive capabilities are included as penalties in the fitness function. In parallel GA-TS, GA operators are executed for each process. If best fitness of the GA is not changed for several generations, TS operators are executed for the upper three populations to enhance the local searching capabilities. With migration operation, best string of each node is transferred to the neighboring node after predetermined iterations are executed. For parallel computing, we developed a PC-cluster system consisting of 8 PCs. Each PC employs the 2 GHz Pentium IV CPU and is connected with others through ethernet switch based fast ethernet. To show the usefulness of the proposed method, developed algorithm has been tested and compared on an IEEE 30-bus system in the reference paper. From the simulation results, we can find that the proposed algorithm is efficient for the OPF.

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