• Title/Summary/Keyword: Labeling Method

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Developmental Ability of Bovine Embryos Nuclear Transferred with Frozen-thawed or Cooled Donor Cells

  • Hong, S.B.;Uhm, S.J.;Lee, H.Y.;Park, C.Y.;Gupta, M.K.;Chung, B.H.;Chung, K.S.;Lee, H.T.
    • Asian-Australasian Journal of Animal Sciences
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    • v.18 no.9
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    • pp.1242-1248
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    • 2005
  • This study was designed to investigate the in vitro developmental ability and apoptosis of bovine embryos nucleartransferred (NT) with frozen-thawed or cooled donor cells. Cultured adult bovine ear cells were used as donor cells after sub-culturing to confluence (CC), cooling to 4$^{\circ}C$ for 48 h, or freezing-thawing (FT). Apoptotic cells in blastocysts were evaluated for apoptosis by terminal deoxynucleotidyl transferase mediated dUTP nick end labeling (TUNEL) method. Fusion, cleavage and blastocyst rates were 69.0 (167/242), 68.8 (115/167), and 29.9 (50/167) with CC cells, 70.4 (88/125), 69.3 (61/88), and 29.6 (26/88) with cooled cells and 66.1 (117/177), 70.1 (82/117), and 13.7 (16/117) with FT cells, respectively. Blastocyst rates of NT embryos derived from FT cells were significantly lower than those from CC or cooled cells (p<0.05). In addition, NT blastocysts produced by using FT cells showed significantly higher apoptosis rates (6.4${\pm}$4.0%) than those produced by CC (2.8${\pm}$1.7%) or cooled (2.3${\pm}$1.3%) cells. However, cooling of donor cells had no significant adverse effect on blastocyst rate as well as apoptosis rate. Therefore, our results suggest that cooled cells may be used as an alternative to freshly cultured confluent culture cells, as donor cells, for the production of Somatic nuclear cloned cattle.

Effect of the Extraction Method on the Soybean Embryo Factor 3 Activity (추출 방법에 따른 대두 배인자 3 역가)

  • Lee, Kyung-Hoon;Chung, Dong-Hyo;Kim, Seong-San;Song, Youn-Ho;Kim, Woo-Yeon
    • Applied Biological Chemistry
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    • v.38 no.1
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    • pp.63-66
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    • 1995
  • Soybean nuclear extracts were prepared to detect SEF3(soybean embryo factor 3), which is presumed to be a trans-acting factor for the expression of the soybean ${\beta}-conglycinin\;{\alpha}'$ subunit gene. To increase the specific activity of DNA probe during labeling with $[{\alpha}-^{32}P]$dATP, dATP was added to a final concentration of 1.1 mM during the chase reaction. It results in approximately four-fold increase of specific activity of the DNA probe. Effects of several modifications in preparation of soybean nuclear extracts were examined. It was found that glycerol is effective to stabilize SEF3 during the preparation of nuclear extracts and polyethylenimine could be used to increase the specific activity of SEF3 in nuclear extracts.

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A Change Detection Technique Supporting Nested Blank Nodes of RDF Documents (내포된 공노드를 포함하는 RDF 문서의 변경 탐지 기법)

  • Lee, Dong-Hee;Im, Dong-Hyuk;Kim, Hyoung-Joo
    • Journal of KIISE:Databases
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    • v.34 no.6
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    • pp.518-527
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    • 2007
  • It is an important issue to find out the difference between RDF documents, because RDF documents are changed frequently. When RDF documents contain blank nodes, we need a matching technique for blank nodes in the change detection. Blank nodes have a nested form and they are used in most RDF documents. A RDF document can be modeled as a graph and it will contain many subtrees. We can consider a change detection problem as a minimum cost tree matching problem. In this paper, we propose a change detection technique for RDF documents using the labeling scheme for blank nodes. We also propose a method for improving the efficiency of general triple matching, which used predicate grouping and partitioning. In experiments, we showed that our approach was more accurate and faster than the previous approaches.

Chemical Imaging Analysis of the Micropatterns of Proteins and Cells Using Cluster Ion Beam-based Time-of-Flight Secondary Ion Mass Spectrometry and Principal Component Analysis

  • Shon, Hyun Kyong;Son, Jin Gyeong;Lee, Kyung-Bok;Kim, Jinmo;Kim, Myung Soo;Choi, Insung S.;Lee, Tae Geol
    • Bulletin of the Korean Chemical Society
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    • v.34 no.3
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    • pp.815-819
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    • 2013
  • Micropatterns of streptavidin and human epidermal carcinoma A431 cells were successfully imaged, as received and without any labeling, using cluster $Au_3{^+}$ ion beam-based time-of-flight secondary ion mass spectrometry (TOF-SIMS) together with a principal component analysis (PCA). Three different analysis ion beams ($Ga^+$, $Au^+$ and $Au_3{^+}$) were compared to obtain label-free TOF-SIMS chemical images of micropatterns of streptavidin, which were subsequently used for generating cell patterns. The image of the total positive ions obtained by the $Au_3{^+}$ primary ion beam corresponded to the actual image of micropatterns of streptavidin, whereas the total positive-ion images by $Ga^+$ or $Au^+$ primary ion beams did not. A PCA of the TOF-SIMS spectra was initially performed to identify characteristic secondary ions of streptavidin. Chemical images of each characteristic ion were reconstructed from the raw data and used in the second PCA run, which resulted in a contrasted - and corrected - image of the micropatterns of streptavidin by the $Ga^+$ and $Au^+$ ion beams. The findings herein suggest that using cluster-ion analysis beams and multivariate data analysis for TOF-SIMS chemical imaging would be an effectual method for producing label-free chemical images of micropatterns of biomolecules, including proteins and cells.

A generating samples method for multiple object tracking using motion histogram (다중 물체 추적에서의 모션 히스토그램을 이용한 샘플 생성 기법)

  • Chun, Ki-Hong;Kang, Hang-Bong
    • 한국HCI학회:학술대회논문집
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    • 2007.02a
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    • pp.744-749
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    • 2007
  • 물체 추적시스템은 비디오 감시 시스템, 화상회의 시스템과 같은 다양한 비전 응용 분야에서 점점 비중이 높아지고 있다. 이 시스템에서 가장 널리 사용되고 있는 방법 중 하나로 Particle-Filter를 들 수 있다. 하지만, 이 Particle-Filter의 단점은 유사한 여러 물체를 추적할 때에 그 물체들이 겹치거나 사라질 경우 정확한 추적을 하기 어렵다는 것이다. 이 단점을 극복하기 위해 많은 연구가 진행되고 있으며, 본 논문에서는 이 문제를 극복하기 위한 새로운 방법을 제안하고자 한다. 다중 물체 추적에서 빈번히 일어나는 문제는 두 가지로 요약할 수 있는데, 동일한 다중 물체가 부분적으로 엇갈리거나 다른 객체에 완전히 겹친 후 떨어질 때 한 물체를 중복하여 추적하는 문제(merge and split problem)와 이 때 분리되어 추적은 됐지만, 물체를 혼동하여 추적하는 문제(Labeling problem)이다. 본 논문에서는 이 러한 문제들을 풀기 위해 이미지 필드에서 보다 정확한 확률분포를 만들고, 이 확률분포의 신뢰성을 높이기 위해서 물체의 특징정보를 표현하는 몇 가지 방법을 제안한다. 전자의 문제는 두 가지 문제로 나누어 생각해 보았다. 첫째, 복잡환 환경에서의 분포를 찾아내는 것과 둘째, 추적 중인 물체를 잃어버릴 경우 새로운 샘플을 생성함으로써 나누어 보았다. 이 문제 중 첫번째는 K-means 클러스터링을 이용하여 유사한 물체가 주변에 퍼져 있을 때, 하나의 후보 위치가 아닌, K개의 후보 위치들을 만들어 내어 보다 정확한 추적이 가능하게 하였으며, 두 번째 문제는 추적 중인 물체가 다른 커다란 물체에 가려질 경우이다. 이 상황에서 샘플을 생성하는 방법은 지금까지 해왔던 간단한 환경에서의 생성 범위와는 다르게 넓게 해야 생성시켜야 한다. 이 때 샘플링의 수를 늘리지 않으면서, 최대한 정확하게 추적하기 위해서 동영상에서 물체의 모션을 이용한 모션 히스토그램을 얻어내고, 그 정보를 이용하여 샘플을 생성하는 위치를 조절함으로써 이 문제를 풀어 보았다. 그리고, 후자의 문제인 이미지 필드상에서 확률분포의 신뢰성을 높이기 위한 특징 정보는 기존에 많이 사용하던 칼라 히스토그램에 공간정보의 의미를 부여하는 칼라 히스토그램을 분할하는 방법과 SIFT에서 사용하는 방향정보와 크기정보를 사용했다. 이것들을 사용하여 보다 정확한 물체추적시스템을 다음과 같이 제안한다.

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Diagnosis of Down Syndrome Using PCR (중합효소연쇄반응을 이용한 다운증후군의 진단)

  • Kim, Young-Tae;Lee, Hee-Kyung;Lim, Hye-Kyung;Kim, Jung-Hyun;Kim, Sun-Haeng;Ku, Pyong-Sahm;Ju, Gap-Soon;Lee, Min-Soo
    • Clinical and Experimental Reproductive Medicine
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    • v.21 no.2
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    • pp.201-206
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    • 1994
  • Down syndrome is one of the major chromosomal anomalies in Korea. To decrease incidence of Down syndrome, antenatal diagnosis is essential. At present, antenatal diagnosis of Down syndrome is done by karyotyping from chorionic villus sampling, amniocentesis, and cordocentsis. All these methods have some problems such as a risk of abortion, a long waiting time, difficulties in sampling, and so on. The aim of study was to confirm that PCR(Polymerase Chain Reaction) using D21S11 primer could be a diagnostic tool for Down syndrome. PCR using D21S11 primers with $^{32}P$ labeling at 5' end was done in 21 cases of DNA from 21 Trisomy and 20 cases of DNA from normal karyotype. PCR product was running for 10 hours on the 6% polyacrylamide gel under 1,000 V or for 8 hours under 1,500 V. After X-ray film exposure, it was read by densitometry. Normal group showed 1: 1 band or single band. 21 Trisomy group showed 1.3-2: 1 band or 2.3 times of density compared to normal single band or 3 bands. This method gave the result within 24 hours. It can be an useful diagnostic tool to detect 21 Trisomy antenatally, especially in late pregnancy, and in preimplantation diagnosis.

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Needs Assessment of Nutrition Education for Preschoolers and Their Parents using Focus Group Interview (포커스 그룹 인터뷰를 이용한 유치원 학부모 대상의 유아영양교육 요구도 조사)

  • Kim, Kyungmin
    • Journal of the East Asian Society of Dietary Life
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    • v.25 no.1
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    • pp.20-29
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    • 2015
  • This study investigated the demand of nutrition education programs among preschooler's parents. Focus group interview was conducted four times with 29 parents of preschool children. Most subjects appeared to have interest in nutrition education; 'very interested' (58.6%), 'somewhat interested' (20.7%). Sources of nutrition information were 'internet' (35.1%), 'books' (21.6%), 'newspaper or magazines' (13.5%), 'family or relatives' (13.5%), 'media' (8.1%), 'preschool' (5.4%) and 'hospital or public health center' (2.7%) in order. The most frequently mentioned health problems related to dietary behavior were atopy and obesity. Major concerns for children's dietary behavior was picky eating habits, and having questions for how to deal with this problem. Most subjects had trouble with obtaining an adequate amount of dietary supplements for their children. Nutrition education for parents about food labeling and information on processed foods was in demand. Preferred methods of nutrition education for children were playing games with stickers, gardening vegetables, and participating in cooking. Attitudes toward computer-assisted education materials, one of the methods of nutrition education, appeared to be ambivalent. Some preschool parents showed negative attitudes towards exposing their children to electronic devices at an early age, whereas others showed positive attitudes. Subjects were interested in meal-planning and ways to balance nutrients for their child. Parents preferred attending professional lectures to receive reading materials or searching websites as an adult nutrition education method. Results of this study have implications on providing basic information for developing nutrition education programs for preschoolers and their parents. Future research should focus on developing nutrition education programs for both preschools and the home.

New screening method for anti-inflammatory agent (Cyclooxygenase 억제제 검색을 통한 항염증제 개발 연구)

  • Lee, Su-Hwan;Jeong, Seong-Won;Lee, U-Yeong
    • Journal of the Society of Cosmetic Scientists of Korea
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    • v.20 no.1
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    • pp.25-36
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    • 1994
  • It is weal known that bacterial lipopolysaccharide (LPS) stimulates prostaglandin synthesis in various experimental system via enhancing the expression of cylooxygenase-2 (COX-2). This study was designed to characterize U)5-induced prostaglandin synthesis in mouse peritoneal macrophages LPS-stimulated prostaglandin synthesis in macrophages with short term exposure was not so much prominent, but there was a burst in prostaglandin synthesis 8 hours after the LPS treatment and this u·as accompanied with the increase of cyclooxygenase activity, Dexamethasone markedly inhibited prostaglandin synthesis in this system. Metabolic label ins data supported above observations and thus, it could be concluded that LPS induces the do novo synthesis of COX-2 by which it stimulates the prostaglandin synthesis in mouse peritoneal macrophages, These data suggested that this experimental model system could be used for the screening procedure of COX-2 selective inhibitors. Ketoprofen, a non steroidal anti inflammatory agent, appeared to inhibit COX-1 relatively more selectively than COX-2.

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In Vitro Antitumor Properties of an Isolate from Leaves of Cassia alata L

  • Olarte, Elizabeth Iglesias;Herrera, Annabelle Aliga;Villasenor, Irene Manese;Jacinto, Sonia Donaldo
    • Asian Pacific Journal of Cancer Prevention
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    • v.14 no.5
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    • pp.3191-3196
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    • 2013
  • Leaf extracts of Cassia alata L (akapulko), traditionally used for treatment of a variety of diseases, were evaluated for their potential antitumor properties in vitro. MTT assays were used to examine the cytotoxic effects of crude extracts on five human cancer cell lines, namely MCF-7, derived from a breast carcinoma, SK-BR-3, another breast carcinoma, T24 a bladder carcinoma, Col 2, a colorectal carcinoma, and A549, a nonsmall cell lung adenocarcinoma. Hexane extracts showed remarkable cytotoxicity against MCF-7, T24, and Col 2 in a dose-dependent manner. This observation was confirmed by morphological investigation using light microscopy. Further bioassay-directed fractionation of the cytotoxic extract led to the isolation of a TLC-pure isolate labeled as f6l. Isolate f6l was further evaluated using MTT assay and morphological and biochemical investigations, which likewise showed selectivity to MCF-7, T24, and Col 2 cells with $IC_{50}$ values of 16, 17, and 17 ${\mu}g/ml$, respectively. Isolate f6l, however, showed no cytotoxicity towards the non-cancer Chinese hamster ovarian cell line (CHO-AA8). Cytochemical investigation using DAPI staining and biochemical investigation using terminal deoxynucleotidyl transferase-mediated dUTP nick end labeling (TUNEL)-a method used to detect DNA fragmentation-together with caspase assay, demonstrated apoptotic cell death. Spectral characterization of isolate f6l revealed that it contained polyunsaturated fatty acid esters. Considering the cytotoxicity profile and its mode of action, f6l might represent a new promising compound with potential for development as an anticancer drug with low or no toxicity to non-cancer cells used in this study.

Proteomic Analysis of Bovine Pregnancy-specific Serum Proteins by 2D Fluorescence Difference Gel Electrophoresis

  • Lee, Jae Eun;Lee, Jae Young;Kim, Hong Rye;Shin, Hyun Young;Lin, Tao;Jin, Dong Il
    • Asian-Australasian Journal of Animal Sciences
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    • v.28 no.6
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    • pp.788-795
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    • 2015
  • Two dimensional-fluorescence difference gel electrophoresis (2D DIGE) is an emerging technique for comparative proteomics, which improves the reproducibility and reliability of differential protein expression analysis between samples. The purpose of this study was to investigate bovine pregnancy-specific proteins in the proteome between bovine pregnant and non-pregnant serum using DIGE technique. Serums of 2 pregnant Holstein dairy cattle at day 21 after artificial insemination and those of 2 non-pregnant were used in this study. The pre-electrophoretic labeling of pregnant and non-pregnant serum proteins were mixed with Cy3 and Cy5 fluorescent dyes, respectively, and an internal standard was labeled with Cy2. Labeled proteins with Cy2, Cy3, and Cy5 were separated together in a single gel, and then were detected by fluorescence image analyzer. The 2D DIGE method using fluorescence CyDye DIGE flour had higher sensitivity than conventional 2D gel electrophoresis, and showed reproducible results. Approximately 1,500 protein spots were detected by 2D DIGE. Several proteins showed a more than 1.5-fold up and down regulation between non-pregnant and pregnant serum proteins. The differentially expressed proteins were identified by MALDI-TOF mass spectrometer. A total 16 protein spots were detected to regulate differentially in the pregnant serum, among which 7 spots were up-regulated proteins such as conglutinin precursor, modified bovine fibrinogen and IgG1, and 6 spots were down-regulated proteins such as hemoglobin, complement component 3, bovine fibrinogen and IgG2a three spots were not identified. The identified proteins demonstrate that early pregnant bovine serum may have several pregnancy-specific proteins, and these could be a valuable information for the development of pregnancy-diagnostic markers in early pregnancy bovine serum.