• 제목/요약/키워드: LSU rDNA

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A New Report of Biscogniauxia petrensis Isolated from Mosquitoes in Korea

  • Das, Kallol;Kim, Joung-Ho;Choi, Kwang-Shik;Lee, Seung-Yeol;Jung, Hee-Young
    • 한국균학회지
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    • 제48권2호
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    • pp.87-93
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    • 2020
  • A fungal strain designated KNU-WDM2A2 was isolated from mosquitoes in Gimcheon, Korea. The pure culture was transferred to potato dextrose agar (PDA) and synthetic nutrient agar (SNA) media and attained a diameter of 90 mm after 10 days of incubation at 25℃. The colonies were whitish to light pink and cottony to wooly, with an abundant production of aerial mycelia. The strain produced hyaline to slightly yellowish conidiophores that were rough-walled and branched, with conidiogenous cells arising terminally or laterally. Conidia were unicellular, hyaline to light brown, smooth, and oval or ovoid to clavate, with a size of 4.1-6.9×2.5-3.3 ㎛ (n=65). A phylogenetic analysis was conducted using the internal transcribed spacer (ITS) regions and 28S rDNA of large subunit (LSU) sequences, to support the cultural and morphological characteristics. The KNU-WDM2A2 strain was identified here as Biscogniauxia petrensis, new to Korea.

First report of Amphidinium fijiense(Dinophyceae) from the intertidal zone of a sandy beach of Jeju Island, Korea

  • Su-Min Kang;Taehee Kim;Joon-Baek Lee;Jang-Seu Ki;Jin Ho Kim
    • 환경생물
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    • 제40권4호
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    • pp.497-509
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    • 2022
  • A strain of Amphidinium species was established from samples collected from the intertidal zone of a sandy beach of Jeju Island, Korea. Its cells were 13.0-15.0 ㎛ in length and 10.0-13.0 ㎛ in width. Its cell shape was round or oval and dorsoventrally flat. A pyrenoid was located in the center of the cell and a nucleus was posteriorly located. Its epicone was small and left-deflecting. Its cingulum had V-shape on the ventral side, forming a ventral ridge and extending to the sulcus. Polygonal amphiesmal vesicles and ring-shaped body scales not described previous were observed on the surface of the cell. Its morphological features were consistent with those of previously described Amphidinium fijiense. Phylogeny based on ITS region and LSU rDNA sequences revealed that this Amphidinium isolate was clearly clustered with other A. fijiense strains, but separated from other Amphidinium species. These results indicate that this Amphidinium isolate is A. fijiense. This study reports its presence for the first time in the intertidal zone of a sandy beach of Jeju Island, Korea.

Sequence analysis of partial LSU rDNA of three Alexandrium species (Dinophyceae) hitherto unreported

  • Kim, Keun-Yong;Makoto Yoshida;Kim, Chang-Hoon
    • 한국양식학회:학술대회논문집
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    • 한국양식학회 2003년도 추계학술발표대회 논문요약집
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    • pp.35-35
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    • 2003
  • We, for the first time, reported molecular sequences of large subunit ribosomal DNA Dl-D3 region of A. hiranoi, A. leei and A. satoanum hitherto unreported. In addition, this study presented the full-length sequences of A. affine, A. fraterculus, A. catenella and A. tamarense occurring in Korean coastal waters. In total, 17 Alexandrium morphospecies were subjected to the phylogenetic analysis using the Maximum-likelihood (ML) method. The alignment result of sequences of A. hiranoi and A. pseudogonyaulax showed that there were only two substitutions without length heterogeneity implying their genetic affiliation. In ML tree, A. leei formed a deeply diverging branch probably because of the accelerated evolutionary rate, and its phylogenetic position was so ambiguous to resolve the phylogenetic relationship to the residual taxa. An A. satoanum culture showing morphological variation in the sulcal plate formed an independent divergent branch with consistent sister relationship to A. hiranoi/A. pseudogonyaulax clade supported by the high posterior probability (PP) value. Blast search in GenBank showed the sequence data of A. affine, A. fraterculus, A. catenella and A. tamarense corresponded to their morphological species designation. In ML tree, Alexandrium species were commonly split into four main clades. The inter-clade relationships were not clear and usually supported by the week PP values. In general, the sulcal plate of Alexandrium species seemed to reflect the true phylogeny at the main clade level, and the connection between the 1 and the apical pore complex seemed to reflect the phylogeny at the subclade level.

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무화과나무의 모무늬잎마름 증상에 관여하는 Pseudocercospora bolleana 동정 (Identification of Pseudocercospora bolleana Associated with Angular Leaf Spot on Common Fig in Korea)

  • 최인영;최영준;이총규;신현동
    • 한국균학회지
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    • 제49권4호
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    • pp.539-545
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    • 2021
  • 한국의 무화과나무 모무늬잎마름 증상에 관여하는 한 균주의 Cercospora류 곰팡이가 형태적으로는 Passalora속에 속하지만 계통학적으로는 Pseudocercospora속에 속한다고 알려져 있다. 이 문제를 해결하기 위하여, 6점의 시료를 현미경으로 검경하였으며 두 균주를 염기서열 분석하였다. 그 결과, 이들 시료의 곰팡이는 형태적으로는Passalora bolleana와 일치하였다. ITS와 LSU 염기서열을 분자계통학적으로 분석한 결과 이들 두 균주가 Pseudocercospora속 집락에 위치하였다. 결과적으로, 한국 유래의 세 균주(본 연구의 두 균주와 이전의 한 균주)와 루마니아 유래의 한 균주는 모두 Pseucocercospora bolleana로 동정되었다. 추가적으로, 대만과 한국에서 무화과나무 점무늬병균으로 알려진 Pseudocercospora fici-caricae와도 비교하고 토의하였다.

국내에 서식하는 꽃에서 분리한 야생 효모 분포 및 종 다양성 (Distribution and Species Diversity of Wild Yeasts Isolated from Flowers in Korea)

  • 김정선;이미란;김재윤;허준;권순우;윤봉식;김수진
    • 한국균학회지
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    • 제48권4호
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    • pp.475-484
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    • 2020
  • 국내에 서식하는 꽃에서 다양한 토착 효모를 분리 및 확보하고 효모의 분포 특성과 종 다양성에 관해 연구하였다. 국내 25지역에서 꽃 9종 77개체를 채집한 후 효모를 순수분리하였다. 효모 502균주의 large-subunit (LSU) rDNA 염기서열을 분석 및 상동성 비교로 각 효모의 종을 동정하였다. 분리된 효모는 총 50종으로 동정 되었고, 모든 꽃 시료로부터 Aureobasidium pullulans, A. leucospermi, Filobasidium magnum이 분리되었다. 꽃에 우점한 효모 3종을 제외하고, 효모 균주 수가 적게 분리된 종은 지역과 분리원에 따른 유의성을 확인할 수는 없었다. 본 연구를 통해 꽃으로부터 확보한 국내 토착 효모 50종은 산업적 활용을 위한 자원으로써 역할을 기대할 수 있고, 추후 효모와 기주 간의 상호작용이나 효모다양성 연구의 기초자료로써 활용될 수 있을 것이다.

A Rare Stinkhorn Fungus Itajahya rosea Attract Drosophila by Producing Chemical Attractants

  • Borde, Mahesh;Kshirsagar, Yogesh;Jadhav, Reshma;Baghela, Abhishek
    • Mycobiology
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    • 제49권3호
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    • pp.223-234
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    • 2021
  • Itajahya rosea was found growing in association with Leucaena leucocephala plants at Savitribai Phule Pune University campus in India. The species identity was confirmed by phylogenetic analysis based on ITS and LSU regions of rDNA, wherein, our fugus was placed along with I. rosea in phylogenetic tree. It represents first record of I. rosea from India. Frequent visitation by Drosophila species on I. rosea fruiting body particularly on gleba was observed. The Drosophila got attracted to the detached gleba under the laboratory conditions and even sometimes, they prefer to sit over the gleba as compare to their food banana. It suggested that I. rosea gleba or pseudostipe produces some compounds for attraction and feeding behavior of Drosophila species. Therefore, we characterized the volatile attractants produced by gleba and pseudostipe of I. rosea by GC-MS analysis. Nineteen compounds were identified from gleba while nine compounds were recovered from the pseudostipe. Out of them, blends of three abundant odor producing volatile compounds were reported namely, Hexadecane, Pentadecane and Nonadecane, which are responsible for attraction of Drosophila toward the gleba. Three fatty acids namely 9,12-octadecadienoic acid (Z,Z), hexadecanoic acid and benzoic acid ethyl ester produced are served as an appetitive signal through olfactory response of Drosophila, so the flies were feed on the gleba. Two pheromones' compounds, heneicosane and (+)-(5S,9S)-5,9-dimethylpentadecane, were also reported in pseudostipe and gleba, respectively, which play a role in Drosophila for breeding. Our study highlights an intriguing chemical ecology of fungus-Drosophila interaction.

Taxonomy of Arthrinium minutisporum sp. nov., Pezicula neosporulosa, and Acrocalymma pterocarpi: New Records from Soil in Korea

  • Das, Kallol;Lee, Seung-Yeol;Choi, Hyo-Won;Eom, Ahn-Heum;Cho, Young-Je;Jung, Hee-Young
    • Mycobiology
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    • 제48권6호
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    • pp.450-463
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    • 2020
  • The strains 17E-042, 17E-039, and NC13-171 belong to Ascomycota and were isolated from soil collected from Sancheong-gun and Yeongam-gun, Korea. The strain 17E-042 produced white mycelial colonies that developed a sienna color with a round margin on potato dextrose agar (PDA), and the reverse side developed a light sienna color. Morphologically, this strain was similar to the strains of Arthrinium phragmites and A. hydei, but the shorter conidial size of the newly identified strain (17E-042) was distinct. The strain 17E-039 produced macroconidia that were pale yellow to orange-brown, elongated-ellipsoid to oblong, round at both ends, primarily straight but sometimes slightly curved, 0-septate, thin-walled, and filled with numerous droplets, having diameters of 20.4-34.3 × 8.0-12.0 ㎛. And the strain NC13-171 formed hyaline to light brown chlamydospores, solitary or in a chain. Multigene phylogenetic analyses were conducted using sequence data obtained from internal transcribed spacer (ITS) regions, 28S rDNA large subunit (LSU), β-tubulin (TUB2), translation elongation factor 1-alpha (TEF1-α), and RNA polymerase II large subunit (RPB2) genes. The results of molecular phylogeny, the detailed descriptions and illustrations of each species strongly support our proposal that these strains from soil in Korea be designated as Arthrinium minutisporum sp. nov. and two new records of Pezicula neosporulosa and Acrocalymma pterocarpi.