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Use of Fast Transfer Analysis Cartridges for Cervical Sampling and Real Time PCR Based High Risk HPV Testing in Cervical Cancer Prevention - a Feasibility Study from South India

  • Vijayalakshmi, Ramshankar;Viveka, Thangaraj Soundara;Malliga, JS;Murugan, Kothandaraman;Kanchana, Albert;Arvind, Krishnamurthy
    • Asian Pacific Journal of Cancer Prevention
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    • v.16 no.14
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    • pp.5993-5999
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    • 2015
  • Background: Molecular testing for human papillomavirus (HPV) is the most objective and reproducible of all cervical cancer screening tests and also less demanding in terms of training and quality assurance. However, there is an impending need for cost effective molecular HPV testing methods with sampling ease, easy storage measures and minimum turn around times suitable for a low resource setting. Objective : Our aim was to evaluate the feasibility of using a fast transfer analysis (FTA) mini elute cartridge for cervical sampling to identify high risk HPV by real time PCR and to compare molecular HPV testing and Pap cytology testing to predict histologically confirmed cervical precancer (CIN 2+ lesions) in a cervical cancer prevention program. Materials and Methods: This was conducted as a pilot study (n=200) on women sampled using FTA mini elute cartridges, genotyped by two different real time PCR assays, detecting 13 high risk HPV (HR HPV) species, including HPV16 along with its physical DNA status. Results obtained from each of the tests were compared and analysed using suitable statistical tests. Results: With FTA mini elute cartridge samples HR HPV positivity was seen in 48/200 (24%). Of these, presence of HPV 16 DNA was observed in 28/48 (58.3%) women. High risk HPV was positive in 20% (37/185) of women with benign cytology and 73.3% (11/15) of women with abnormal cytology findings. A very significant correlation (${\chi}^2=22.090$ ; p=0.000) was observed between cytology and HR HPV findings showing an increasing trend of HR HPV prevalence in 50% (1/2) of LSIL, 75% (3/4) of HSIL and 100% (3/3) of SCC. Of the CIN 2+ lesions identified by histopathology, 88.9% (8/9) had HR HPV. A significant association (${\chi}^2=11.223$ ; p=0.001) of HR HPV and histopathologically confirmed CIN 2+ lesions was found. Sensitivity of the two tests were comparable but specificity of Pap testing was better (90.7% vs 70.4%) to predict histopathologically diagnosed cervical precancers. Conclusions: The current study explored the feasibility of using a FTA mini elute cartridge for cervical sampling for the first time in India as a part of a community based cervical cancer prevention program. We suggest that FTA based sampling is suitable and feasible for real time based HPV testing. Molecular HR HPV testing can be more sensitive and useful to identify high risk women requiring Pap testing which is more specific to detect histologically confirmed cervical precancer.

The Relationship between Temperature Patterns and Urban Morfometri in the Jakarta City, Indonesia

  • Maru, Rosmini;Ahmad, Shaharuddin
    • Asian Journal of Atmospheric Environment
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    • v.9 no.2
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    • pp.128-136
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    • 2015
  • Sky View Factor (SVF) is one of the urban morfometri parameters that impact on the Urban Heat Island (UHI). SVF analisys was conducted in the city of Jakarta to investigate the relationship between urban temperature with urban morfometri. Jakarta City is the most populous city in the world that has a surrounding area $66,152km^2$ and the total population around 23 million people. The population of the city is the sixth highest in the world today. SVF measurements done by taking pictures at the six stations that have different morphological characteristics namely (1) the narrow streets Apartment Cempaka Mas (JS ITC), (2) the width of the road Apartment Cempaka Mas (JL ITC), (3) in front of Colleges Kanisius (DKK), (4) in front of office Journalist of Indonesia (DKWI), (5) Utan Kayu (UK), and (6) Tambun (TB). SVF value is obtained from the photgraphic image. Taking pictures at the location using a Nikon D90 camera with a Nikon Fisheye Nikkor 10.5 mm 1 : 2.8 G ED, further processed through a global mapper program. Therefore, the SVF derived from the six stations that vary 0.21 to 0.78. Temperature measurement is done during daylight hours from 06:00 am to 18:00 pm during the Western Part of Indonesia (WIB). Measurements performed at three different times, namely working days (HK) regular holidays (HCB) national holidays (HCN). The results showed that the highest average temperature of $33.32^{\circ}C$, occurring at UK station (SVF=0.45) at the time of HCB. Meanwhile, the average low temperature of $31.22^{\circ}C$ occurred at JLITC station (SVF=0.42). The two-time occurred on ordinary holidays. Maximum temperature of $38.4^{\circ}C$ occurred in Utan Kayu station (SFV=0.45) that occurred at 11.00 hrs, normal holidays. Furthermore minimum temperature 24.5 occurred at Tambun station (SVF=0.78) at 06.00 hrs in the morning at the usual holidays and national holidays. In general, the results showed that areas with large SVF has a lower temperature compared with areas with smaller SVF. Though, are not the only factors that matter, but this research may show that an increase in temperature in the city of Jakarta. Therefore, it is necessary to mitigate the serious from the government or society.

Physiological Functionality of Nuruk, Makgeolli and Cheonggukjang Made with Fungi and Bacteria isolated from Korean Traditional Fermented Foods (전통발효식품에서 분리한 진균류와 세균을 이용하여 제조한 누룩과 막걸리 그리고 청국장의 생리기능성)

  • Jang, In-Taek;Kang, Min-Gu;Yi, Sung-Hun;Lim, Sung-Il;Kim, Hye-Ryun;Ahn, Byung-Hak;Lee, Jong-Soo
    • The Korean Journal of Mycology
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    • v.40 no.3
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    • pp.164-173
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    • 2012
  • For development of new high-value Korean traditional fermented food by using bioactive fungi and bacteria, Nuruk, Makgeolli and Cheonggukjang were prepared by mold, yeasts and bacteria from Korean traditional fermented foods and their physiological functionalities were investigated. Aspergillus oryzae N152-1 Nuruk showed the highest antihypertensive angiotensin I-converting enzyme inhibitory activity(57.2%), and Makgeolli made by Saccharomyces cerevisiae Y111-5 and commercial JS Ipguk (solid cultures of saccharifying enzyme-producing mold) was showed 42.0% of anti-obesity ${\alpha}$-glucosidase inhibitory activity. Among various Cheonggukjang, No 463 Cheonggukjang made by Brevibacterium iodinum NCDO 613(T) was showed the highest fibrinolytic activity (size of clear zone: 28 mm) and good anti-obesity ${\alpha}$-glucosidase inhibitory activity.

Isolation and Characteristics of Acetic Acid Bacteria for Persimmon Vinegar Fermentation (감식초 발효용 초산균의 분리 및 특성)

  • Park, Mi-Hwa;Lee, Jeong-Ok;Lee, Ju-Young;Yu, Seon-Joo;Ko, Yu-Jin;Kim, Yeong-Hoon;Ryu, Chung-Ho
    • Journal of the Korean Society of Food Science and Nutrition
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    • v.34 no.8
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    • pp.1251-1257
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    • 2005
  • This study was carried out to investigate characteristics of acetic acid bacteria for persimmon vinegar fermen-tation. Acetic acid bacteria were isolated from statically fermented vinegar. Microscopically the cells appeared as non-motile and non-flagellated, preferentially occuring in pairs. Isolated strains were able to grow in the presence of acetic acid, ethanol, and glucose. Four of them produced 2-ketogluconic acid but did not produce 5-ketogluconic acid. The four strains isolated from statically fermented vinegar were considered to be grouped into Acetobacter. The strains were inoculated into persimmon juice for persimmon vinegar fermentation. They produced acetic acid in the range of 5.25$\∼$5.68$\%$.

A study on the development and applicability of fire risk assessment method for small road tunnels passing only small cars (소형차 전용 도로터널의 화재 위험도 평가기법개발 및 적용성에 관한 연구)

  • Ryu, Ji-Oh;Choi, Pan-Gyu
    • Journal of Korean Tunnelling and Underground Space Association
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    • v.20 no.6
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    • pp.917-930
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    • 2018
  • A quantitative risk assessment method for quantitatively evaluating the fire risk in designing a road tunnel disaster prevention facilities has been introduced to evaluate the appropriateness of a disaster prevention facility in a large tunnel through which all vehicle types pass. However, since the quantitative risk assessment method of the developed can be applied only to the large sectional area tunnels (large tunnels), it is necessary to develop a quantitative risk assessment method for road tunnels passing only small cars which has recently been constructed or planned. In this study, fire accidents scenarios and quantitative risk assesment method for small road tunnels through small cars only which is based on the methods for existing road tunnels (large tunnels). And the risk according to the distance between cross passage is evaluated. As a result, in order to satisfy the societal risk assessment criteria, the distance of the appropriate distance between cross passages was estimated to be 200 m, and the effect of the ventilation system of the large port exhaust ventilation system was quantitatively analyzed by comparing the longitudinal ventilation system.

Pile-cap Connection Behavior between Hollow-Head Precast Reinforced Concrete Pile and Foundation (프리캐스트 철근콘크리트 중공 말뚝과 기초 접합부 반복가력 거동)

  • Bang, Jin-Wook;Jo, Young-Jae;Ahn, Kyung-Chul;Kim, Yun-Yong
    • Journal of the Korea institute for structural maintenance and inspection
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    • v.23 no.1
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    • pp.71-77
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    • 2019
  • Recently, most of the pile foundations have been applied as a method to transfer the heavy load of the structure to the ground with high bearing capacity. In this study, the pile-cap behavior between foundation and hollow-head precast reinforced concrete(HPC) pile reinforced with longitudinal rebar and filling concrete was experimentally evaluated depending on the cyclic load and reinforcement ratio. As the drift ratio increases, it was found that the cracks pattern and fracture behavior of two types of pile-cap specimens according to the reinforcement ratio were evaluated to be similar. As the reinforcement ratio increases by 1.77 times, the BS-H25 specimen increases the maximum load by 1.47 times compared to the BS-H19 specimen. However, the ductility ratio of positive and negative was decreased by 76% and 70% respectively. After the yielding of the pile-cap reinforcing rebars, the positive and negative stiffness of the all specimens were decreased by a range from 66% to 71% and a range from 54% to 57% respectively, and the average stiffness of BS-H25 specimen is 13% higher than that of BS-H19 specimen. The cumulative dissipated energy capacity of BS-H19 and BS-H25 specimen under ultimate load state is 5.5 times and 6.6 times higher than that of service load state.

Effect of a probiotic mixture on egg quality and egg production in laying hens (복합생균제가 산란계의 생산성, 계란품질 및 악취저감에 미치는 영향)

  • Shin, JS;Um, KH;Lee, JY;Choi, YS;Park, HJ;Lee, HS;Park, BS
    • Journal of the Korean Applied Science and Technology
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    • v.36 no.3
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    • pp.748-757
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    • 2019
  • The objective of the present study was to evaluate effects of probiotic mixture (PM) including Bacillus subtillus, Streptomyces galilaeus and Sphingobacteriaceae on egg production, egg quality, and eliminating odor in laying hens. A total of 240 Hy-Line Brown laying hens (50 wks of age) were divided into four treatment groups (60 replicates of birds, each) in completely randomized design. Groups were assigned to four experimental diets: CON (a basal diet of no PM additive as control), basal diet supplemented with either CP3 (0.3% commercial probiotics), PM3 (0.3% PM), or PM5 (0.5% PM 0.5). Data of egg production and egg quality were obtained during 6 weeks of experimental period. Egg production, Haugh unit, shell thickness, breaking strength, yolk color, and albumin high were significantly increased in CP3 and PM3 compared to those in CON and CP3. Ammonia levels and numbers of E. coli, total aerobic bacteria, Coliform, and Salmonella in feces were significantly increased in order of CON>CP3>PM3>PM5. The present study indicates that addition of 0.3% probiotic mixture including B. subtillus, S. galilaeus and Sphingobacteriaceae to diets may improve egg production, egg quality, and eliminate fecal ammonia of laying hens.

Some Properties and Microbial Community Changes of Gul (Oyster) Jeotgal during Fermentation

  • Kim, Jeong A;Yao, Zhuang;Kim, Hyun-Jin;Kim, Jeong Hwan
    • Microbiology and Biotechnology Letters
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    • v.47 no.3
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    • pp.343-349
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    • 2019
  • Gul jeotgals (GJs) were prepared using solar salt aged for 3 years. One sample was fermented using starters, such as Bacillus subtilis JS2 and Tetragenococcus halophilus BS2-36 (each $10^6CFU/g$), and another sample was fermented without starters for 49 days at $10^{\circ}C$. Initial counts of bacilli and lactic acid bacteria (LAB) in non-starter GJ were found to be $3.20{\times}10^2$ and $7.67{\times}10^1CFU/g$ on day 0, and increased to $1.37{\times}10^3$ and $1.64{\times}10^6CFU/g$ on day 49. Those of starter GJ were found to be $2.10{\times}10^5$ and $3.30{\times}10^7CFU/g$ on day 49, indicating the growth of starters. The pH values of GJ were $5.93{\pm}0.01$ (non-starter) and $5.92{\pm}0.01$ (starter) on day 0 and decreased to $5.78{\pm}0.01$ (non-starter) and $5.75{\pm}0.01$ (starter) on day 49. Amino-type nitrogen (ANN) production increased continuously during fermentation, and $407.19{\pm}15.85$ (non-starter) and $398.04{\pm}13.73$ (starter) mg% on day 49. Clone libraries of 16S rRNA genes were constructed from total DNA extracted from non-starter GJ on days 7, 21, and 42. Nucleotide sequences of Escherichia coli transformants harboring recombinant pGEM-T easy plasmid containing 16S rRNA gene inserts from different bacterial species were analyzed using BLAST. Uncultured bacterium was the most dominant group and Gram - bacteria such as Acidovorax sp., Afipia sp., and Variovorax sp. were the second dominant group. Bacillus amyloliquefaciens (day 7), Bacillus velezensis (day 21 and 42), and Bacillus subtilis (day 42) were observed, but no lactic acid bacteria were detected. Acidovorax and Variovorax species might play some role in GJ fermentation. Further studies on these bacteria are necessary.

'Hyowon6', a Mid-Late Maturing Rice Variety with High Quality (고품질 중만생 벼 품종 '효원6호')

  • Im, Da-Eun;San, Mar Lar;Jang, Seong-Gyu;Park, So-Yeon;Jin, Sang-Hyeon;Kim, Yong Chul;Ham, Tae-Ho;Kwon, Soon-Wook
    • Korean Journal of Breeding Science
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    • v.50 no.4
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    • pp.529-533
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    • 2018
  • Hyowon6, a mid-late maturing, good eating quality rice variety with multi-resistance, was developed by the rice breeding team of Pusan National University in 2013. This variety was derived from a cross between Hwayeong (as a multi-resistant parent) and Koshihikari (as a good eating quality parent). Selection by the pedigree breeding method was carried out until the $F_8$ generation. A promising line, JS14-12-36-8-5-3-1-1-1, was developed and designated as HY103 in 2013. This variety headed on August 22, which was 11 days later than that of Hwayeong. The culm length and panicle length of Hyowon6 was 85.7 cm and 21.1 cm, respectively. The number of panicles per hill was 14.5 and the number of grains per panicle was 101.7. The ratio of ripened grain was approximately 92% and the 1,000-grain weight was approximately 21.36 g for brown rice, which were similar to those of Hwayeong. Hyowon6 was moderately resistant to lodging and also to neck blast, leaf blight, and stripe virus. The glossiness value of Hyowon6 was 83, which was considerably higher than that of Hwayeong.

React-based Web System Providing Residual Material Information (잔류물질정보 제공을 위한 React 기반 웹 서비스)

  • Kim, Boseon;Lee, Min-Seong;Gang, MinGyu;Park, Jee-Tae
    • KNOM Review
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    • v.24 no.1
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    • pp.29-37
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    • 2021
  • With the spread of the Internet, users can easily receive various services and exchange information through the web. There are several requirements for building a web system, and it must be developed using a programming language or platform for user purposes. Residual material information refers to information on medicines and pesticides added to food, and residual material standards are used to measure the level of residues in food produced by companies and farmers to determine whether those levels meet domestic or international standards. Currently, the Ministry of Food and Drug Safety provides residual acceptance standards for food additives, including food, pesticides and animal medicines, in the form of documents, which must be serviced smoothly and conveniently by users through the establishment of a web system. It must also meet a variety of requirements, including user accessibility, such as scalability and compatibility. This paper proposes react-based residual material information web system that allows users to access more conveniently and receive residual material information smoothly. We measured the speed for the three inportant functions of information provision and compared them with existing residual material information web systems and qualitatively evaluated the seven essential requirements: scalability, compatibility, and accessibility.