• The Korean Journal of Applied Statistics
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• v.33 no.4
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• pp.511-526
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• 2020

Single-cell RNA-sequencing (scRNA-seq) data consists of each cell's RNA expression extracted from large populations of cells. One main purpose of using scRNA-seq data is to identify inter-cellular heterogeneity. However, scRNA-seq data pose statistical challenges when applying traditional clustering methods because they have many missing values and high level of noise due to technical and sampling issues. In this paper, motivated by analyzing scRNA-seq data, we propose a novel spectral-based clustering method by imposing different weights on genes when computing a similarity between cells. Assigning weights on genes and clustering cells are performed simultaneously in the proposed clustering framework. We solve the proposed non-convex optimization using an iterative algorithm. Both real data application and simulation study suggest that the proposed clustering method better identifies underlying clusters compared with existing clustering methods.

• KSII Transactions on Internet and Information Systems (TIIS)
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• v.5 no.5
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• pp.1069-1084
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• 2011

This paper considers an optimal base station clustering problem for designing a mobile (wireless) communication network. For a given network with a set of nodes (base stations), the problem is to optimally partition the set of nodes into subsets (each called a cluster) such that the associated inter-cluster traffic is minimized under certain topological constraints and cluster capacity constraints. In the problem analysis, the problem is formulated as an integer programming problem. The integer programming problem is then transformed into a binary integer programming problem, for which the associated linear programming relaxation is solved in a column generation approach assisted by a branch-and-bound procedure. For the column generation, both a heuristic algorithm and a valid inequality approach are exploited. Various numerical examples are solved to evaluate the effectiveness of the LP (Linear Programming) based branch-and-bound algorithm.

• Proceedings of the IEEK Conference
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• summer
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• pp.447-450
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• 2004

This paper proposes remotely sensed image classification method by fuzzy c-means clustering algorithm using average intra-cluster distance. The average intra-cluster distance acquires an average of the vector set belong to each cluster and proportionates to its size and density. We perform classification according to pixel's membership grade by cluster center of fuzzy c-means clustering using the mean-values of training data about each class. Fuzzy c-means algorithm considered membership degree for inter-cluster of each class. And then, we validate degree of overlap between clusters. A pixel which has a high degree of overlap applies to the maximum likelihood classification method. Finally, we decide category by comparing with fuzzy membership degree and likelihood rate. The proposed method is applied to IKONOS remote sensing satellite image for the verifying test.

• 정보저장시스템학회:학술대회논문집
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• 2005.10a
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• pp.129-133
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• 2005

Data storage related with writing and retrieving requires high storage capacity, fast transfer rate and less access time. Today any data storage system cannot satisfy these conditions, however holographic data storage system can perform faster data transfer rate because it is a page oriented memory system using volume hologram in writing and retrieving data. System can be constructed without mechanical actuating part therefore fast data transfer rate and high storage capacity about $1Tb/cm^3$ can be realized. In this paper, to reduce errors of binary data stored in holographic data storage system, a new method for bit error reduction is suggested. First, find cluster centers using subtractive clustering algorithm then reduce intensities of pixels around cluster centers and fuzzy rules. Therefore, By using this error reduction method following results are obtained ; the effect of Inter Pixel Interference noise is decreased and the intensity profile of data page becomes uniform therefore the better data storage system can be constructed.

• Journal of Information Processing Systems
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• v.19 no.1
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• pp.17-32
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• 2023

Centralized hierarchical routing protocols are often used to solve the problems of uneven energy consumption and short network life in wireless sensor networks (WSNs). Clustering and cluster head election have become the focuses of WSNs. In this paper, an energy balanced clustering routing algorithm optimized by sine cosine algorithm (SCA) is proposed. Firstly, optimal cluster head number per round is determined according to surviving node, and the candidate cluster head set is formed by selecting high-energy node. Secondly, a random population with a certain scale is constructed to represent a group of cluster head selection scheme, and fitness function is designed according to inter-cluster distance. Thirdly, the SCA algorithm is improved by using monotone decreasing convex function, and then a certain number of iterations are carried out to select a group of individuals with the minimum fitness function value. From simulation experiments, the process from the first death node to 80% only needs about 30 rounds. This improved algorithm balances the energy consumption among nodes and avoids premature death of some nodes. And it greatly improves the energy utilization and extends the effective life of the whole network.

• Journal of Korean Society of Industrial and Systems Engineering
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• v.41 no.2
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• pp.1-8
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• 2018

K-means algorithm is one of the most popular and widely used clustering method because it is easy to implement and very efficient. However, this method has the limitation to be used with fixed number of clusters because of only considering the intra-cluster distance to evaluate the data clustering solutions. Silhouette is useful and stable valid index to decide the data clustering solution with number of clusters to consider the intra and inter cluster distance for unsupervised data. However, this valid index has high computational burden because of considering quality measure for each data object. The objective of this paper is to propose the fast and simple speed-up method to overcome this limitation to use silhouette for the effective large-scale data clustering. In the first step, the proposed method calculates and saves the distance for each data once. In the second step, this distance matrix is used to calculate the relative distance rate ($V_j$) of each data j and this rate is used to choose the suitable number of clusters without much computation time. In the third step, the proposed efficient heuristic algorithm (Group search optimization, GSO, in this paper) can search the global optimum with saving computational capacity with good initial solutions using $V_j$ probabilistically for the data clustering. The performance of our proposed method is validated to save significantly computation time against the original silhouette only using Ruspini, Iris, Wine and Breast cancer in UCI machine learning repository datasets by experiment and analysis. Especially, the performance of our proposed method is much better than previous method for the larger size of data.

• Journal of Korea Water Resources Association
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• v.42 no.3
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• pp.177-190
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• 2009

Rehabilitation projects for old water mains typically require considerable capital investments. One of the economical ways of pursuing the rehabilitation projects is to focus on a specific area within the entire region under management. In this paper the hierarchical clustering methods that analyze spatial inter-relationship of location data are applied to about 8,000 water leak location data recorded in a case study area from 1992 to 1997. Among the hierarchical clustering methods Single, Complete, and Average Linkage Methods are used to identify clusters of the water leak locations and to divide the area according to the defined clusters. By comparing the clusters identified by the clustering methods, the best clustering method for the case study area is suggested. Prioritization of the area for maintenance is obtained based on the water leak incident intensity for the clustered area using the suggested best clustering method.

• Journal of KIISE:Databases
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• v.31 no.6
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• pp.699-709
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• 2004

XML is increasingly important in data exchange and information management. Starting point for retrieving the structure and integrating the documents efficiently is clustering the documents that have similar structure. The reason is that we can retrieve the documents more flexible and faster than the method treating the whole documents that have different structure. Therefore, in this paper, we propose the similar structure-based incremental clustering method useful for retrieving the structure of XML documents and integrating them. As a novel method, we use a clustering algorithm for transactional data that facilitates the large number of data, which is quite different from the existing methods that measure the similarity between documents, using vector. We first extract the representative structures of XML documents using sequential pattern algorithm, and then we perform the similar structure based document clustering, assuming that the document as a transaction, the representative structure of the document as the items of the transaction. In addition, we define the cluster cohesion and inter-cluster similarity, and analyze the efficiency of the Proposed method through comparing with the existing method by experiments.

• Journal of KIISE:Software and Applications
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• v.27 no.6
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• pp.660-667
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• 2000

In this paper, a word segmentation method for handwritten Korean text line images is proposed. The method uses gap information to segment words in line images, where the gap is defined as a white run obtained after vertical projection of line images. Each gap is assigned to one of inter-word gap and inter-character gap based on gap distance. We take up three distance measures which have been proposed for the word segmentation of handwritten English text line images. Then we test three clustering techniques to detect the best combination of gap metrics and classification techniques for Korean text line images. The experiment has been done with 305 text line images extracted manually from live mail pieces. The experimental result demonstrates the superiority of BB(Bounding Box) distance measure and sequential clustering approach, in which the cumulative word segmentation accuracy up to the third hypothesis is 88.52%. Given a line image, the processing time is about 0.05 second.

• Journal of the Korean Society of Surveying, Geodesy, Photogrammetry and Cartography
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• v.37 no.6
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• pp.445-452
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• 2019

In this study, parallel processing codes of k-means clustering algorithm were developed and implemented in a PC-cluster for unsupervised classification of large satellite images. We implemented intra-node code using multicores of CPU (Central Processing Unit) based on OpenMP (Open Multi-Processing), inter-nodes code using a PC-cluster based on message passing interface, and hybrid code using both. The PC-cluster consists of one master node and eight slave nodes, and each node is equipped with eight multicores. Two operating systems, Microsoft Windows and Canonical Ubuntu, were installed in the PC-cluster in turn and tested to compare parallel processing performance. Two multispectral satellite images were tested, which are a medium-capacity LANDSAT 8 OLI (Operational Land Imager) image and a high-capacity Sentinel 2A image. To evaluate the performance of parallel processing, speedup and efficiency were measured. Overall, the speedup was over N / 2 and the efficiency was over 0.5. From the comparison of the two operating systems, the Ubuntu system showed two to three times faster performance. To confirm that the results of the sequential and parallel processing coincide with the other, the center value of each band and the number of classified pixels were compared, and result images were examined by pixel to pixel comparison. It was found that care should be taken to avoid false sharing of OpenMP in intra-node implementation. To process large satellite images in a PC-cluster, code and hardware should be designed to reduce performance degradation caused by file I / O. Also, it was found that performance can differ depending on the operating system installed in a PC-cluster.