• Title/Summary/Keyword: ITS region

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Secondary Structure and Phylogenetic Implications of ITS2 in the Genus Tricholoma

  • Suh, Seok-Jong;Kim, Jong-Guk
    • Journal of Microbiology and Biotechnology
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    • v.12 no.1
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    • pp.130-136
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    • 2002
  • The internal transcribed spacer (ITS) region in the genus Tricholoma was analyzed, including for its primary nucleotide sequence and secondary structural characterization. The secondary structures of the ITS2 region in the genus Tricholoma were identified for use in bioinformatic processes to study molecular evolution and compare secondary structures. Ten newly sequenced ITS regions were added to the analysis and submitted to the GenBank database. The resulting structure from a minimum energy algorithm indicated the four-domain model, as previously suggested by others. The conserved secondary structure of the ITS2 sequences of the genus Tricholoma exhibited certain unique features, including pyrimidine tracts in the loops of domain A and a complete structure containing four domains, with motifs identified in other ITS2 secondary structures. A phylogenetic tree was derived from sequence alignment based on the secondary structures. From the resulting maximum parsimonious tree, it was found that the species in the genus Tricholoma had evolved monophyletically and were composed of four groups, as supported by the bootstrapping values and pileus color.

Stereoscopic Conversion of Object-based MPEG-4 Video (객체 기반 MPEG-4 동영상의 입체 변환)

  • 박상훈;김만배;손현식
    • Proceedings of the IEEK Conference
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    • 2003.07e
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    • pp.2407-2410
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    • 2003
  • In this paper, we propose a new stereoscopic video conversion methodology that converts two-dimensional (2-D) MPEG-4 video to stereoscopic video. In MPEG-4, each Image is composed of background object and primary object. In the first step of the conversion methodology, the camera motion type is determined for stereo Image generation. In the second step, the object-based stereo image generation is carried out. The background object makes use of a current image and a delayed image for its stereo image generation. On the other hand, the primary object uses a current image and its horizontally-shifted version to avoid the possible vertical parallax that could happen. Furthermore, URFA(Uncovered Region Filling Algorithm) is applied in the uncovered region which might be created after the stereo image generation of a primary object. In our experiment, show MPEG-4 test video and its stereoscopic video based upon out proposed methodology and analyze Its results.

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Study on a Quadruped Walking Robot with Omni-directional Characteristics (전방향 특성을 갖는 사족보행 로봇에 관한 연구)

  • Kim, Hee-Guk;Lee, Jun-Yong;Song, Nak-Yoon;Cho, Hwang
    • Proceedings of the Korean Society of Precision Engineering Conference
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    • 1996.11a
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    • pp.815-819
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    • 1996
  • In this work, regular rotational gaits of the quadruped crawling robot required to change its moving direction without affecting be its orientation and its static stability margin are studied. The regular rotational gaits provide the quadruped crawling robot with omnidirectional characteristics. However, the ideal foothold region for each of legs of the quadruped crawling robot is assumed for simplicity. Nonetheless, it is expected that the results of this paper will provide the insight for both design of legs of the crawling robot with omnidirectional characteristics as well as its operation of the crawling robot system with specified stability margin.

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Traversable Region Detection Algorithm using Lane Information and Texture Analysis (차로 수 정보와 텍스쳐 분석을 활용한 주행가능영역 검출 알고리즘)

  • Hwang, Sung Soo;Kim, Do Hyun
    • Journal of Korea Multimedia Society
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    • v.19 no.6
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    • pp.979-989
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    • 2016
  • Traversable region detection is an essential step for advanced driver assistance systems and self-driving car systems, and it has been conducted by detecting lanes from input images. The performance can be unreliable, however, when the light condition is poor or there exist no lanes on the roads. To solve this problem, this paper proposes an algorithm which utilizes the information about the number of lanes and texture analysis. The proposed algorithm first specifies road region candidates by utilizing the number of lanes information. Among road region candidates, the road region is determined as the region in which texture is homogeneous and texture discontinuities occur around its boundaries. Traversable region is finally detected by dividing the estimated road region with the number of lanes information. This paper combines the proposed algorithm with a lane detection-based method to construct a system, and simulation results show that the system detects traversable region even on the road with poor light conditions or no lanes.

A Comparison of Genospecies of Clinical Isolates in the Acinetobacter spp. Complex Obtained from Hospitalized Patients in Busan, Korea

  • Park, Gyu-Nam;Kang, Hye-Sook;Kim, Hye-Ran;Jung, Bo-Kyung;Kim, Do-Hee;Chang, Kyung-Soo
    • Biomedical Science Letters
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    • v.25 no.1
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    • pp.40-53
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    • 2019
  • Of the Acinetobacter spp., A. baumannii (genospecies 2) is the most clinically significant in terms of hospital-acquired infections worldwide. It is difficult to perform Acinetobacter-related taxonomy using phenotypic characteristics and routine laboratory methods owing to clusters of closely related species. The ability to accurately identify Acinetobacter spp. is clinically important because antimicrobial susceptibility and clinical relevance differs significantly among the different genospecies. Based on the medical importance of pathogenic Acinetobacter spp., the distribution and characterization of Acinetobacter spp. isolates from 123 clinical samples was determined in the current study using four typically applied bacterial identification methods; partial rpoB gene sequencing, amplified rRNA gene restriction analysis (ARDRA) of the intergenic transcribed spacer (ITS) region of the 16~23S rRNA, the $VITEK^{(R)}$ 2 system (an automated microbial identification system) and matrix-assisted laser desorption/ionization-time of flight mass spectrometry (MALDI-TOF MS). A. baumannii isolates (74.8%, 92/123) were the most common species, A. nosocomialis (10.6%, 13/123) and A. pittii isolates (7.5%, 9/123) were second and third most common strains of the A. calcoaceticus-A. baumannii (ACB) complex, respectively. A. soli (5.0%, 6/123) was the most common species of the non-ACB complex. RpoB gene sequencing and ARDRA of the ITS region were demonstrated to lead to more accurate species identification than the other methods of analysis used in this study. These results suggest that the use of rpoB genotyping and ARDRA of the ITS region is useful for the species-level identification of Acinetobacter isolates.

A LINE SEARCH TRUST REGION ALGORITHM AND ITS APPLICATION TO NONLINEAR PORTFOLIO PROBLEMS

  • Gu, Nengzhu;Zhao, Yan;Gao, Yan
    • Journal of applied mathematics & informatics
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    • v.27 no.1_2
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    • pp.233-243
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    • 2009
  • This paper concerns an algorithm that combines line search and trust region step for nonlinear optimization problems. Unlike traditional trust region methods, we incorporate the Armijo line search technique into trust region method to solve the subproblem. In addition, the subproblem is solved accurately, but instead solved by inaccurate method. If a trial step is not accepted, our algorithm performs the Armijo line search from the failed point to find a suitable steplength. At each iteration, the subproblem is solved only one time. In contrast to interior methods, the optimal solution is derived by iterating from outside of the feasible region. In numerical experiment, we apply the algorithm to nonlinear portfolio optimization problems, primary numerical results are presented.

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Multivariate confidence region using quantile vectors

  • Hong, Chong Sun;Kim, Hong Il
    • Communications for Statistical Applications and Methods
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    • v.24 no.6
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    • pp.641-649
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    • 2017
  • Multivariate confidence regions were defined using a chi-square distribution function under a normal assumption and were represented with ellipse and ellipsoid types of bivariate and trivariate normal distribution functions. In this work, an alternative confidence region using the multivariate quantile vectors is proposed to define the normal distribution as well as any other distributions. These lower and upper bounds could be obtained using quantile vectors, and then the appropriate region between two bounds is referred to as the quantile confidence region. It notes that the upper and lower bounds of the bivariate and trivariate quantile confidence regions are represented as a curve and surface shapes, respectively. The quantile confidence region is obtained for various types of distribution functions that are both symmetric and asymmetric distribution functions. Then, its coverage rate is also calculated and compared. Therefore, we conclude that the quantile confidence region will be useful for the analysis of multivariate data, since it is found to have better coverage rates, even for asymmetric distributions.

Structural reliability analysis of offshore structure at cold region (저온해역에서의 해양구조물에 대한 구조신뢰성 해석)

  • 이주성
    • Journal of Ocean Engineering and Technology
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    • v.11 no.3
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    • pp.8-19
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    • 1997
  • In this study an adequate type of offshore structure at the Sakhalin region as cold region is proposed and its structural design results are presented based on the reliability analysis. Structural safety assessment has been carried out for the proposed offshore structure at the Sakhalin area as designed by the reliability method. And a rational design procedure is presented based on the reliability analysis. Followings are drawn through the present study : - Four colum TLP structure is proposed as an adequate offshore structure type at the cold region like the Sakhalin region and the reliability-based structural design results are presented. It is seen that the proposed type is a more adequate and economic than the fixed type. - Safety assessment of the proposed structure applying the extended incremental load method is performed. - Referring the allowable safety level for offshore structures it has been found present TLP structure has sufficient structural safety at the system level as well as at the component level.

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Analysis of Knit Fabric Structure with its Voxel Data

  • Shinohara, T.;Takayama, J.;Ohyama, S.;Kobayashi, A.
    • 제어로봇시스템학회:학술대회논문집
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    • 2003.10a
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    • pp.53-56
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    • 2003
  • For identifying how a sample knit fabric is woven a method to obtain positional information of each yarn of the sample from voxel data made out of its x-ray CT images is newly proposed in this paper. The positional information is obtained by tracing the each yarn. The each yarn is traced by estimating a direction of the yarn in a certain small region in which the yarn can be regarded as straight and moving the region slightly along the estimated direction alternately. The yarn direction is estimated by correlating the voxel data in the region with a three-dimensional yarn model. The effectiveness of this method is confirmed by applying the method to voxel data made out of CT images of a knit fabric experimentally.

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Redistribution of Welding Residual Stress and its Effects on Fatigue Crack Propagation (피로균열이 진전할 때 용접잔류응력의 재분포와 그 영향)

  • 이용복;조남익
    • Journal of Welding and Joining
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    • v.13 no.4
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    • pp.155-162
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    • 1995
  • Redistribution of residual stress and its effects during fatigue crack propagates from tensile residual stress region in weldment are investigated. Tests are performed by using welded CCT specimens of structual rolling steel (SS400) and it makes fatigue crack propagate from tensile residual stress region. For this study tension-tension loading type is selected by external loading condition and magnetizing stress indicator is used correctly to measure redistribution of residual stress according to fatigue crack growth and number of loading cycles. From this result, it is proved that redistribution of residual stress is mainly consist of residual stress released by fatigue crack growth. When fatigue crack propagates from tensile residual stress region residual stress are redistributed and it makes fatigue crack growth rate largely increase. Fatigue crack growth rate is low in case of redistributed residual stress compare with initial distributed residual stress.

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