• Title/Summary/Keyword: INDEX OF SPECIES DIVERSITY

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Comparative Analysis of Gut Microbiota among Broiler Chickens, Pigs, and Cattle through Next-generation Sequencing (차세대염기서열 분석을 이용한 소, 돼지, 닭의 장내 미생물 군집 분석 및 비교)

  • Jeong, Ho Jin;Ha, Gwangsu;Shin, Su-Jin;Jeong, Su-Ji;Ryu, Myeong Seon;Yang, Hee-Jong;Jeong, Do-Youn
    • Journal of Life Science
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    • v.31 no.12
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    • pp.1079-1087
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    • 2021
  • To analyze gut microbiota of livestock in Korea and compare taxonomic differences, we conducted 16S rRNA metagenomic analysis through next-generation sequencing. Fecal samples from broiler chickens, pigs, and cattle were collected from domestic feedlots randomly. α-diversity results showed that significant differences in estimated species richness estimates (Chao1 and ACE, Abundance-based coverage estimators) and species richness index (OUTs, Operational taxonomic units) were identified among the three groups. However, NPShannon, Shannon, and Simpson indices revealed that abundance and evenness of the species were statistically significant only for poultry (broiler chickens) and mammals (pigs and cattle). Firmicutes was the most predominant phylum in the three groups of fecal samples. Linear discriminant (LDA) effect size (LEfSe) analysis was conducted to reveal the ranking order of abundant taxa in each of the fecal samples. A size-effect over 2.0 on the logarithmic LDA score was used as a discriminative functional biomarker. As shown by the fecal analysis at the genus level, broiler chickens were characterized by the presence of Weissella and Lactobacillus, as well as pigs were characterized by the presence of provetella and cattele were characterized by the presence of Acinetobacter. A permutational multivariate analysis of variance (PERMANOVA) showed that differences of microbial clusters among three groups were significant at the confidence level. (p=0.001). This study provides basic data that could be useful in future research on microorganisms associated with performance growth, as well as in studies on the livestock gut microbiome to increase productivity in the domestic livestock industry.

Fertilization Effects on Soil Properties, Understory Vegetation Structure and Growth of Pinus densiflora Seedlings Planted after Forest Fires (산불피해지에 식재 조림된 소나무임분의 시비처리에 따른 소나무 묘목의 생장, 토양특성 및 하층식생 구조의 변화)

  • Won, Hyung-kyu;Lee, Yoon Young;Jeong, Jin-Hyun;Koo, Kyo-Sang;Lee, Choong-Hwa;Lee, Seung-Woo;Jeong, Yong-Ho;Kim, Choonsig;Kim, Hyungho
    • Journal of Korean Society of Forest Science
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    • v.95 no.3
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    • pp.334-341
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    • 2006
  • This study was to investigate the growth of planted red pine (Pinus densiflora S. et. Z.) seedling, soil properties and understory vegetation structure after fertilizer treatments [unfertilized plot (control), CF plot (Combination Fertilizer), UF plot (Urea Formaldehyde Fertilizer)] in a Pinus densiflora stand planted after the forest fires in Gosung, Gangwon province. The height growth rates of seedlings in four years were 264% in unfertilized, 404% in CF, and 388% in UF plots, respectively. The root collar diameters were increased 340% in unfertilized, 454% in CF, and 427% in UF plots, respectively. No significant changes occurred in soil total nitrogen and potassium ion ($K^+$) with the fertilization. However, available $P_2O_5$, content in the soil surface (0-15 cm) increased with the fertilizer application. Soil organic matter increased significantly with fertilizer treatments, while gradual decrease occurred in unfertilized plots. Sodium ion ($Na^-$) decreased in all sites. Soil pH, CEC, calcium ion ($Ca^{2+}$) and magnesium ion ($Mg^{2+}$) contents were not significantly different among treatments. Although Shannon's species diversity index and species richness in understory vegetation did not change with fertilizer treatments, vegetation cover rates in forest floor increased significantly with the fertilization. These results suggest that the increase of pine seedling growth and vegetation cover rates with fertilization could enhance soil stabilization in forest tire areas.

The Structure of Plant Community of the Woonsooam Valley in Jogyesan (Mt.), Suncheon (순천시 조계산 운수암 계곡부 식물군집구조)

  • Han, Bong-Ho;Choi, Jin-Woo;Noh, Tai-Hwan;Hur, Ji-Yeon
    • Korean Journal of Environment and Ecology
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    • v.28 no.1
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    • pp.45-54
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    • 2014
  • This study was carried out to investigate the ecological succession sere and conservative value, and to provide the basic data in Woonsooam Valley, in Jogyesan (Mt.) (altitude 884m), Suncheon City, Korea by analysing the structure of the plant community. Fifteen plots (size is $20m{\times}20m$) were set up at an altitude of range from 255m to 495m. As a result of analysis of DCA which is one of the ordination technique, the plant communities were divided into five groups which are community I (Pinus densiflora community), community II (Quercus variabilis-Quercus serrata community), community III (Q. serrata-Q. variabilis community), and community IV (Carpinus tschonoskii-Q. serrata community) and community v(Deciduous broad-leaved forest community). We found out that the vegetation of the study site located in the South Temperate Climate Zone. The study site is found out that Q. serrata community 34.4%, part of slope in valley is the distribution that dominant species is Q. serrata-Q. variabilis community 32.1%. And in valley showed Carpinus tschonoskii community 5.5%. And Sasa borealis was dominant species in the shrub layer. We couldn't supposed that the ecological succession sere of the study site, however we should do a long-term monitoring to investigate the changes of the ecological succession each plant community, According to the index of Shannon's diversity (unit: $400m^2$), community III was ranged from 1.0102 to 1.1013, community V was 0.9945, community II was ranged from 0.7913 to 1.1503, community IV was ranged from 0.8081 to 1.0749 and community I was 0.9273.

Impact of the Pollution on the Benthic Community Environmental impact of the pollution on the benthic coralligenous community in the Gulf of Fos, northwestern Mediterranean (북서 지중해 Fos해역의 해양오염이 해양저서생물군집 Coralligenous Community에 미치는 영향)

  • HONG Jae-Sang
    • Korean Journal of Fisheries and Aquatic Sciences
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    • v.16 no.3
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    • pp.273-290
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    • 1983
  • A bionomic study of the coralligenous concretionary hard bottom in the northwestern Mediterranean was carried out at four stations : three stations(Arnette, Laurons, Auguette) under the influence of intense multisource pollution(gradient decreasing from north to south) in the Gulf of Fos, west of Marseille, France, and one control station(Moyade islet) in an unpolluted area near Riou island, east of Marseille. Along the increasing pollution gradient from the outer to the inner part of the Gulf of Fos, there is a qualitative and quantitative impoverishment of the fauna. On the whole, the species richness, the numerical abundance. and the species diversity index are all on the decrease. Accordingly, the innermost station in the Gulf of Fos(Auguette) is most heavily affected by the industrial, and to a lesser extent by the domestic wastes, from the nearby industrial complex and urban areas. The impact on the benthic coralligenous community of this serious alteration has been analysed in view of community composition, functional aspect, and ecological stocks. The faunal affinity between stations has been studied by means of the two coefficients : fourfold point correlation coefficient and Jaccard's community coefficient. The upper layer and inferior face communities of the coralligenous concretionary structures are also compared.

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Tendency for Vegetation Recovery Years after Forest Road Construction (임도 개설 후 경과년수에 따른 식생 회복 경향)

  • Sung-Yeon Lee;Chung-Weon Yun
    • Journal of Korean Society of Forest Science
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    • v.113 no.3
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    • pp.327-338
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    • 2024
  • Forest road construction can degrade the physical and biological environments of forest ecosystems. Although this degradation may be temporary, some research has shown the potential for the long-term recovery of the original ecosystem. This study investigated changes in communities' structures over time to understand the process of ecosystem change following road construction. Data were collected from 63 plots, each measuring 25m2, in Buyeo-gun, Chungcheongnam-do, including plots from roads constructed in 1998 (25 years elapsed), 2021 (two years elapsed), and 2022 (one year elapsed), using phytosociological methods. The results showed that the importance of the values of Pinus densiflora an d Quercus variabilis in the tree and subtree layers of the 25-year-old cut slopes were similar to those of the control plots, indicating the significant recovery of the original ecosystem's structure and function after 25 years. Species diversity analysis revealed the higher evenness and lower dominance of the cut slopes and road surfaces attributed to the high dominance of species such as Arundinella hirta and Miscanthus sinensis. The community similarity index and detrended correspondence analysis (DCA) indicated that the control plots, all the edge plots, and the 25-year-old cut slopes could be considered part of the same community. In conclusion, forest roads in place for 25 years appear to have been restored to the level of the original ecosystem. These findings can serve as valuable ecological data for understanding the vegetation recovery process at future forest road construction sites.

Flora and Vegetation Structure in a 15-Year-Old Artificial Wetland (조성 후 15년이 경과한 인공습지의 식물상과 식생구조)

  • Son, Deokjoo;Lee, Hyohyemi;Lee, Eun Ju;Cho, Kang-Hyun;Kwon, Dongmin
    • Ecology and Resilient Infrastructure
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    • v.2 no.1
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    • pp.54-63
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    • 2015
  • This study was conducted to investigate the flora and vegetation structure at a 15-year-old artificial wetland for the water purification in Jincheon, Korea. The percentage of species number of obligate wetland plants and facultative wetland plants totaled 40%, whereas that of obligate upland plants and facultative upland plants was 57%. This result showed that the artificial wetland in the study experienced terrestrialization. The number of annual and biennial plants that are pioneer vegetation in a successional stage was lower than that of perennial herbs as a result of the long-term stabilization of vegetation. From the results of DCA (detrended correspondence analysis), water depth played an important role on the classification of vegetation structure in an old artificial wetland. Species diversity was higher in the terrestrialized plant communities such as Iris pseudacorus and Aster koraiensis than in any other wetland communities. Plant communities could be classified according to the wetland indices; obligate upland for A. koraiensis community, facultative wetlands for Carex dispalata var. dispalata and I. pseudacorus community, and obligate wetlands for Nymphoides peltata, Nymphaea tetragona, Phragmites communis, Potamogeton maackianus, and Typha angustifolia community. In conclusion, this result suggests that wetland vegetation should be maintained against terrestrialization through the proper management of sedimentation and hydrological regime in an artificial wetland.

The Selection of Appropriate Sampler for the Assessment of Macrobenthos Community in Saemangeum, the West Coast of Korea (새만금 외해역에서 대형 저서동물 군집 조사를 위한 적정 채집기의 선택)

  • 유재원;김창수;박미라;이형곤;이재학;홍재상
    • The Sea:JOURNAL OF THE KOREAN SOCIETY OF OCEANOGRAPHY
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    • v.8 no.3
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    • pp.285-294
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    • 2003
  • To select an appropriate sampler for the environmental monitoring survey in coastal waters of Saemangeum, Jeollabuk-do, a macrobenthic sampling was conducted in April 2002. Employed samplers were dredge (type Charcot), a semi-quantitative sampler and Smith-McIntyre (SM) and van Veen grab (VV) as quantitative ones. One haul was tried for dredge and 3 replicates (0.1 ㎡${\times}$3) for SM and W at each of 11 stations. Comparisons of sediment volume in sampler bucket and of precision of biological parameters (i.e., density, biomass, species number and diversity index, H') were made between SM and VV. Sediment volume was significantly different (SM > VV) at p-value of 0.0050 (paired t-test) and, in average, 3 replicate samples of SM and VV satisfied a precision level of 0.2 by applying 4th root transformation. Patterns of observed and expected species numbers and H' were compared. Dredge-VV samples showed higher affinity than any other pair. Several dominant species in the area were underestimated in dredge samples (e.g., polychaete Heteromastus filiformis. Aricidea assimilis etc.). Quantifying the agreement pattern of multi-species responses was accomplished by estimating correlations between similarity matrices. Correlation between dredge and VV was slightly higher, but near-per-fect matches were found in general. Different ranks and composition among principal species lists were presumably linked to the effect of penetration depth that differs among samplers. Lower level of some species' abundance in VV samples (ca. 50% compared with those of SM) was explained in this context. It seem appropriate to regard the effect as a probable cause of relatively higher correlations in dredge-VV, Overall bio-logica1 features indicated that a better choice could be SM in situations of requiring high data quality. The others work well, however, on observing and defining faunal characteristics and their capability cannot be questionted if we do not expect a first-order quality.

A Synecological Study of the Alnus japonica Forests in Korea (우리나라 오리나무림의 군락생태학적 연구)

  • Cho, Joon-Hee;Bae, Kwan-Ho;Oh, Seung-Hwan;Kim, Jun-Soo;Cho, Hyun-Je
    • Journal of Korean Society of Forest Science
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    • v.109 no.2
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    • pp.124-135
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    • 2020
  • Alder (Alnus japonica) forests are representative of the wetland in East Asia, including Korea. In the past, alder forests were relatively common in various habitats such as mountains, riversides, back marshes, and alluvial plains. However, this plant community has recently become rare due to increasingly arid habitats and the influence of various land uses. In this study, we identify the synecological characteristics of alder (A. japonica) forests distributed naturally in the mountainous wetlands of Korea and provide basic data for their systematic conservation and management in the future. Based on vegetation survey data collected from 66 alder forests, community types were classified using the methods of the Zürich-Montpellier School of Phytosociology and two-way indicator species analysis. There were eight community types: Styrax obassia, Weigela subsessilis-Fraxinus mandschurica, Spiraea fritschiana, Viola verecunda, Impatiens textori-Spiraea salicifolia, Glyceria leptolepis, Molinia japonica, and Lindera obtusiloba-Quercus acutissima. These community types constituted a vegetation unit hierarchy of two communities, four subcommunities, and eight variants. In addition, the ecological characteristics of each community type were compared (including total coverage per 100 square meter, importance value index, constancy class, life-form composition, diversity indices, community similarity coefficient, and indicator species).

Mesozooplankton Community Dynamics in Watan Stream, Yeonggwang, Korea (영광 와탄천의 중형동물플랑크톤 군집동태)

  • Lee, Dong-Ju;Kim, Say-Wa;Lee, Won-Choel
    • Korean Journal of Environmental Biology
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    • v.27 no.4
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    • pp.425-432
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    • 2009
  • Mesozooplankton dynamics were studied in Watan stream which flows into the Yellow Sea in Yeonggwang, Korea. Samples were collected at eight stations bimonthly during April 2006~February 2007. Mesozooplankton community was consisted of 45 taxa (8 cladocerans and 29 cope-pods). The abundance varied between the highest one ($31{\sim}127,587\;indiv.m^{-3}$) in October, and the lowest ($12{\sim}233\;indiv.m^-3$) in December. Diversity index showed to be the highest value in July (0.671) and the lowest one in August (0.368). A euryhaline species, Acartia hongi was dominant in brackish water stations (the highest abundance at $13.4^{\circ}C$ and 14.1 psu). In freshwater stations of the upstream, two cladoceran species of Polyphemus pediculus and Moina weismani occurred in high abundance in August. Dominant taxa of copepod were clustered to two or three groups mainly due to the difference of salinity gradients. Spatial distribution of mesozooplankton revealed to be determined by salinity gradients which were affected by opening and closing of the artificial dam in Watan stream.

Changes of Benthic Macroinvertebrate Communities after a Small Dam Removal from the Gyeongan Stream in Gyeonggi-do, Korea (경기도 경안천에서 소형 보(洑)의 철거 이후에 변화된 저서성 대형무척추동물 군집)

  • Kil, Hye-Kyung;Kim, Dong-Gun;Jung, Sang-Woo;Shin, Il-Kwon;Cho, Kang-Hyun;Woo, Hyo-Seop;Bae, Yeon-Jae
    • Korean Journal of Environmental Biology
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    • v.25 no.4
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    • pp.385-393
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    • 2007
  • Benthic macroinvertebrate communities were studied after a small dam removal from the mid-section of the Gyeongan stream in Gyeonggi-do, Korea. Quantitative sampling was conducted at immediately upstream (upper) and downstream (lower) sites from the dam as well as at the site where the dam was located (dam site: middle) using a Surber sampler (50$\times$50 cm, mesh 0.25 mm), four times (November 2004, May 2005, January 2006, and May 2006) after the dam removal. As a result, 46 species of benthic macroinvertebtates, belonged in 35 genera, 27 families, 11 orders, 5 classes, and 4 phyla, were sampled from the stream sites, but the number of species that occurred at each sampling trial was different (ranged 3$\sim$17 spp.) according to the seasons and sites. Approximately one year after the dam removal, the species number has in-creased and taxa composition has changed as the microhabitat became more heterogeneously due to a riffle formation in the upstream site. Chironomid larvae and tubificid worms, which are common in Korean urban streams, were the dominant species, while Hydropsyche kozhantschikovi was the 2nd dominant species at some sampling trials. In general, McNaughton's dominance indices decreased and Shannon species diversity indices increased approximately one year after the dam removal. Compositions of collector-filterers, clingers, and swimmers increased as hydropsychid caddisflies, heptageniid mayflies, and baetid mayflies increased, respectively, in the upstream site. The group pollution index and the ecological score using benthic macroinvertebrates both indicated that water environment has been improved in the upstream site after the dam removal.