• Asian-Australasian Journal of Animal Sciences
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• 제23권7호
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• pp.833-847
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• 2010

In the past decade, there have been many advances in whole-genome sequencing in domestic animals, as well as the development of "next-generation" sequencing technologies and high-throughput genotyping platforms. Consequently, these advances have led to the creation of the high-density SNP array as a state-of-the-art tool for genetics and genomics analyses of domestic animals. The emergence and utilization of SNP arrays will have significant impacts not only on the scale, speed, and expense of SNP genotyping, but also on theoretical and applied studies of quantitative genetics, population genetics and molecular evolution. The most promising applications in agriculture could be genome-wide association studies (GWAS) and genomic selection for the improvement of economically important traits. However, some challenges still face these applications, such as incorporating linkage disequilibrium (LD) information from HapMap projects, data storage, and especially appropriate statistical analyses on the high-dimensional, structured genomics data. More efforts are still needed to make better use of the high-density SNP arrays in both academic studies and industrial applications.

• Genomics & Informatics
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• 제10권4호
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• pp.220-225
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• 2012

Recent rapid advances in genetic research are ushering us into the genome sequence era, where an individual's genome information is utilized for clinical practice. The most spectacular results of the human genome study have been provided by genome-wide association studies (GWASs). This is a review of the history of GWASs as related to my work. Further efforts are necessary to make full use of its potential power to medicine.

• 한국정보처리학회:학술대회논문집
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• 한국정보처리학회 2000년도 추계학술발표논문집 (하)
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• pp.1357-1360
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• 2000

본 논문은 다중 이동 에이전트 시스템을 이용한 웹 지리 정보 시스템 모델을 제안한다. 방대한 지리 정보를 분산 병렬처리하기 위해서 호스트간을 이주하고 네트워크 환경에서 효율적으로 수행하는 이동 에이전트를 사용한다. 제안하는 모델은 사용자와 상호작용하고 에이전트를 생성하여 이주시키며 웹 브라우저에 플러그 인 되는 HAP(home agent platform)과 GIS 서버에서 지리객체를 검색하는 iMAP(internet mobile agent)으로 구성된다. 성능 평가는 클라이언트/서버 모델과 이동 에이전트 모델간의 성능 비교를 통해서 보여준다.

• 한국생물정보학회:학술대회논문집
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• 한국생물정보시스템생물학회 2003년도 제2차 연례학술대회 발표논문집
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• pp.229-235
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• 2003

Research of basis technology to construct the human haplotype map is one of active areas in SNP post-genomics research. Identification of haplotype block structure from haplotype data is key step in the haplotype map project. Several algorithms have been proposed for the block identification, including the greedy algorithm, and the dynamic programming based algorithm. This paper analyzed block partitioning method of several algorithm which has been proposed in recent years. HapBlock and HaploBlockFinder are programs used in our experiment.

• 한국생물정보학회:학술대회논문집
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• 한국생물정보시스템생물학회 2004년도 The 3rd Annual Conference for The Korean Society for Bioinformatics Association of Asian Societies for Bioinformatics 2004 Symposium
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• pp.279-285
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• 2004

In the disease association study, the tagSNP selection problem is important at the view of time and cost. We developed the new tagSNP selection system that has also facilities for the haplotype reconstruction and missing data processing. In our system, we improved biological meanings using LD coefficients as well as dynamic programming method. And our system has capability of processing large -scale dataset, such as the total SNPs on a chromosome. We have tested our system with various dataset from daly et al., patil et al., HapMap Project, artificial dataset, and so on.

• Genomics & Informatics
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• 제12권4호
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• pp.208-215
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• 2014

Recently, new methods have been developed for estimating the current and recent changes in effective population sizes. Based on the methods, the effective population sizes of Korean populations were estimated using data from the Korean Association Resource (KARE) project. The overall changes in the population sizes of the total populations were similar to CHB (Han Chinese in Beijing, China) and JPT (Japanese in Tokyo, Japan) of the HapMap project. There were no differences in past changes in population sizes with a comparison between an urban area and a rural area. Age-dependent current and recent effective population sizes represent the modern history of Korean populations, including the effects of World War II, the Korean War, and urbanization. The oldest age group showed that the population growth of Koreans had already been substantial at least since the end of the 19th century.

• 대한환경공학회지
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• 제32권9호
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• pp.879-886
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• 2010

제철소에서 산업부산물로 다량 발생되는 제강전로슬래그를 struvite 정석반응의 정석재로 사용하여 고농도의 질소와 인의 제거특성을 파악하고자 하였다. $NH_4$-N와 $PO_4$-P의 제거 및 회수를 위한 struvite 정석반응의 최적의 pH영역은 8.0~8.75 범위로 확인되었다. pH 8.0~8.75 영역에서 struvite 침전 및 정석반응에 의한 총제거효율은 $NH_4$-N와 $PO_4$-P에 대하여 각각 34.3~61.0%와 91.0~96.2%의 값을 나타냈다. Struvite 정석반응에 의한 $NH_4$-N의 제거는 pH 8.5에서 29.4%의 최대값을 보였고 $PO_4$-P의 경우 pH 8.0에서 65.1%로 최대값을 나타냈다. 수중의 Ca 이온농도가 증가할수록 struvite 정석반응에 의한 $NH_4$-N의 제거효율은 감소하는 경향을 나타냈으며 $PO_4$-P의 경우에는 Ca 이온농도의 변화에 총제거효율이 크게 변하지 않았다. SEM, EDS 및 XRD 분석결과 struvite 정석반응에서 $NH_4$-N과 $PO_4$-P의 제거는 MAP과 HAp 결정이 독립적으로 혹은 정석재의 표면상에 발생함으로써 진행되는 것으로 판단되었다.

• Biomolecules & Therapeutics
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• 제16권2호
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• pp.77-81
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• 2008

The major aim of the Korean Pharmacogenomic Database (KPD) is to offer to users a "bridging" function, making the search for useful information easier. This database has also been established to collect unique Korean genotype data from other databases and to directly link these data to other major databases that offer more informative data. In this way, searches for information about new drug developments and easier and faster evaluation of the more complex and larger databases are possible. The KPD is located at the National Institute of Toxicological Research homepage (http://www.nitr.go.kr/nitr/contents/m134700/view.do), and offers Korean single-nucleotide polymorphism (SNP) information for 154 genes and haplotype information. It also compares the Korean SNP and haplotype frequencies with those of the other ethnic groups registered in the International HapMap. Through the Pharmacogenomic Information and Education facility, we also provide evaluators and the public with information about the concept of pharmacogenomic information, research trends, and the drug regulations of other countries. Because the drug responses of Koreans are not necessarily the same as those of Chinese or Japanese people, it is expected that the systematic operation of the KPD will allow the definition of racial differences and various genomic biomarkers (haplotypes or SNPs) for use in bridging studies and in the approval of new drugs.

• Genomics & Informatics
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• 제5권4호
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• pp.152-160
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• 2007

Most common diseases are caused by multiple genetic and environmental factors. Among the genetic factors, single nucleotide polymorphisms (SNPs) are common DNA sequence variations in individuals and can serve as important genetic markers. Recently, investigations of gene-based and whole genome-based SNPs have been applied to association studies for marker discovery. However, SNPs are so population-specific that the association needs to be verified. Fifty-five genes and 384 SNPs were selected based on association with disease. Genotypes of 337 SNPs in candidate genes were determined using Illumina Sentrix Array Matrix (SAM) chips by an allele-specific extension method in 364 unrelated Korean individuals. Allelic frequencies of SNPs were compared with those of other populations obtained from the International HapMap database. Minor allele frequencies, linkage disequilibrium blocks, tagSNPs, and haplotypes of functional candidate SNPs in 55 genetic disease-associated genes were provided. Our data may provide useful information for the selection of genetic markers for gene-based genetic disease-association studies of the Korean population.

• BMB Reports
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• 제45권1호
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• pp.47-50
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• 2012

The International HapMap Project and the Human Genome Diversity Project (HGDP) provide plentiful resources on human genome information to the public. However, this kind of information is limited because of the small sample size in both databases. A Genome-Wide Association Study has been conducted with 8,842 Korean subjects as a part of the Korea Association Resource (KARE) project. In an effort to build a publicly available browsing system for genome data resulted from large scale KARE GWAS, we developed the KARE browser. This browser provides users with a large amount of single nucleotide polymorphisms (SNPs) information comprising 1.5 million SNPs from population-based cohorts of 8,842 samples. KAREBrowser was based on the generic genome browser (GBrowse), a web-based application tool developed for users to navigate and visualize the genomic features and annotations in an interactive manner. All SNP information and related functions are available at the web site http://ksnp.cdc. go.kr/karebrowser/.