• Clinical and Experimental Pediatrics
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• 제55권11호
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• pp.420-423
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• 2012

Purpose: We phylogenetically analyzed the Escherichia coli strains isolated from children with urinary tract infection (UTI) in 2 regions of Korea. Virulence factors (VFs) and antibiotic resistance of the strains were also determined to compare the possible differences. Methods: A total of 138 E. coli strains were collected from the 2 regions; Gyeongin (78 strains) and Gyeongnam (60 strains). The phylogenetic groups were determined using the triplex polymerase chain reaction (PCR) method and multiplex PCRs were used to detect 7 VFs genes (fimH, papC, iutA, hlyA, sfa/focDE, afa/draBC, and kpsMT II). We also tested for antibiotic resistance. Results: Phylogenetic groups, B2 (61.6%) and D (26.8%), comprised the majority of all isolated strains. Regional comparisons revealed that more B2 strains and fewer non-B2 (A+B1+D) strains were found in Gyeongnam, than in the Gyeongin region (P=0.033), and certain VFs were predominantly detected in Gyeongnam (P<0.05). Neither regional nor phylogenetic differences, in antibiotic resistance of the strains, were significant. Conclusion: We were able to confirm that the geographic location is an important determinant of the distribution of the phylogenetic groups and VFs among the E. coli strains that cause UTI in children.

• Journal of Animal Science and Technology
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• 제60권10호
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• pp.25.1-25.10
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• 2018

The central dogma of gene expression propounds that DNA is transcribed to mRNA and finally gets translated into protein. Only 2-3% of the genomic DNA is transcribed to protein-coding mRNA. Interestingly, only a further minuscule part of genomic DNA encodes for long non-coding RNAs (lncRNAs) which are characteristically more than 200 nucleotides long and can be transcribed from both protein-coding (e.g. H19 and TUG1) as well as non-coding DNA by RNA polymerase II. The lncRNAs do not have open reading frames (with some exceptions), 3`-untranslated regions (3'-UTRs) and necessarily these RNAs lack any translation-termination regions, however, these can be spliced, capped and polyadenylated as mRNA molecules. The flexibility of lncRNAs confers them specific 3D-conformations that eventually enable the lncRNAs to interact with proteins, DNA or other RNA molecules via base pairing or by forming networks. The lncRNAs play a major role in gene regulation, cell differentiation, cancer cell invasion and metastasis and chromatin remodeling. Deregulation of lncRNA is also responsible for numerous diseases in mammals. Various studies have revealed their significance as biomarkers for prognosis and diagnosis of cancer. The aim of this review is to overview the salient features, evolution, biogenesis and biological importance of these molecules in the mammalian system.

• 천문학회보
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• 제46권2호
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• pp.46.3-47
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• 2021

Recently a multilayer spectral inversion (MLSI) model has been proposed to infer the physical parameters of plasmas in the solar chromosphere. The inversion solves a three-layer radiative transfer model using the strong absorption line profiles, H alpha and Ca II 8542 Å, taken by the Fast Imaging Solar Spectrograph (FISS). The model successfully provides the physical plasma parameters, such as source functions, Doppler velocities, and Doppler widths in the layers of the photosphere to the chromosphere. However, it is quite expensive to apply the MLSI to a huge number of line profiles. For example, the calculating time is an hour to several hours depending on the size of the scan raster. We apply deep neural network (DNN) to the inversion code to reduce the cost of calculating the physical parameters. We train the models using pairs of absorption line profiles from FISS and their 13 physical parameters (source functions, Doppler velocities, Doppler widths in the chromosphere, and the pre-determined parameters for the photosphere) calculated from the spectral inversion code for 49 scan rasters (~2,000,000 dataset) including quiet and active regions. We use fully connected dense layers for training the model. In addition, we utilize a skip connection to avoid a problem of vanishing gradients. We evaluate the model by comparing the pairs of absorption line profiles and their inverted physical parameters from other quiet and active regions. Our result shows that the deep learning model successfully reproduces physical parameter maps of a scan raster observation per second within 15% of mean absolute percentage error and the mean squared error of 0.3 to 0.003 depending on the parameters. Taking this advantage of high performance of the deep learning model, we plan to provide the physical parameter maps from the FISS observations to understand the chromospheric plasma conditions in various solar features.

• 콘크리트학회논문집
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• 제29권1호
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• pp.101-107
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• 2017

본 연구는 시멘트계 재료의 프랙탈 특성에 관한 기초적 연구로써, 고로슬래그 미분말 혼입 시멘트 페이스트의 공극 구조를 수은압입법을 이용하여 측정하였고, 측정된 결과를 프랙탈 모델에 적용하여 그 특성을 분석하였다. 분석 결과, 고로슬래그미분말 혼입 시멘트 페이스트의 공극 구조는 그 범위가 나노미터부터 밀리미터 단위까지 다양하게 분포하는 불규칙한 조직이기 때문에, 전체 영역에 대한 프랙탈 차원을 산정했을 때 각 공극 영역의 특성을 반영할 수 없다. 따라서 프랙탈 차원 산정 시 공극 영역을 나누어서 분석하였다. Zhang and Li (1995) model을 적용했을 때, 시멘트와 GGBFS의 수화반응 결과 생성된 C-S-H 내의 gel pores 및 small capillary pores에 해당하는 micro 영역과 large capillary pores에 해당하는 macro 영역에서 각각 프랙탈 특성이 나타나는 결과를 보였다. 또한 macro 영역보다 micro 영역의 공극 표면이 더 불규칙한 형상을 나타내었다. Ji et al. (1997) model을 적용할 경우, micro 영역이 C-S-H 내의 gel pores에 해당하는 micro I과 small capillary pores에 해당하는 micro II로 구분되었으며, 각각의 프랙탈 특성이 산정되었다. 또한 Zhang and Li (1995) model을 결과와 유사하게, macro, micro II, micro I의 순서대로 공극 크기가 작아질수록 VFD 결과 값이 감소하였으며, 이는 곧 공극의 복잡성이 증가함을 나타낸다.

• Asian-Australasian Journal of Animal Sciences
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• 제12권5호
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• pp.689-694
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• 1999

This experiment was carried out to isolate the partial bovine (Bos Taurus coreanae) myogenic factor encoding gene, MyoD, using the rat myogenic factor (MyoD) gene sequence and to compare the gene sequence between another myogenic factor (Myf 5) and MyoD gene of the bovine. To make the probe and isolate the MyoD gene, PCR was performed to amplify rat and bovine MyoD gene including exon I, II and intron I. The homology between mouse and bovine MyoD is high; bovine MyoD gene shows 17 different gene sequence region compared to rat MyoD. Among those, two regions have significant differences; one is the exon I part between 2834 and 2850 bp, the other is intron part between 3274 and 3303 bp of the mouse. At this region homology was 40% in the former and 50% in the latter. Homology between bovine MyoD and Myf5 was 83% in the exon 1. Especially exon I in the Myf5 602-617 bp and 651-683 bp have significant differences. These results suggest that MyoD gene have a similar gene structure in mouse and bovine and MyoD and Myf5 of the bovine, at least in part, have a similar expression and activity.

• 천문학회보
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• 제41권2호
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• pp.38.3-39
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• 2016

We present the results of a search for Very Low-Luminosity Objects (VeLLOs) in the Gould Belt (GB) clouds using infrared and sub-millimeter (sub-mm) data from 1.25 to $850{\mu}m$ and our N2H+ (J = 1-0) observations. We modified the criteria by Dunham et al. to select the VeLLOs in the GB clouds, finding 95 VeLLO candidates, 79 of which are newly identified in this study. Out of 95 sources, 44 were detected in both sub-mm continuum and N2H+ emission and were classified as Group A (the VeLLOs), and 51 sources detected in either sub-mm emission or N2H+ emission were classified with Group B as candidate VeLLOs. We find that these VeLLOs and the candidates are forming in environments different from those of the likely VeLLOs. Seventy-eight sources are embedded within their molecular clouds, and thus are likely VeLLOs forming in a dense environment. The remaining 17 sources are located in low-level extinction regions (Av < 1) connected to the clouds, and can be either background sources or candidate substellar objects forming in an isolated mode. The VeLLOs and the candidates are likely more luminous and their envelopes tend to be more massive in denser environments. The VeLLOs and the candidates are more populous in the clouds where more YSOs form, indicating that they form in a manner similar to that of normal YSOs. The bolometric luminosities and temperatures of the VeLLOs are compared to predictions of episodic accretion models, showing that the low luminosities for most VeLLOs can be well explained by their status in the quiescent phases of a cycle of episodic mass accretion.

• Asian Pacific Journal of Cancer Prevention
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• 제16권17호
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• pp.7911-7916
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• 2015

Serum anti-Helicobacter pylori antibodies and pepsinogens (PGs) have been used as gastric cancer screening and gastric mucosal status markers. Nepal is a low risk country for gastric cancer. However, the mountainous populace in the northern region culturally linked to Tibet as well as Bhutan, a neighboring country, have a high risk of GC. We collected gastric biopsy specimens and sera from 146 dyspeptic patients living in Kathmandu, Nepal. We also examined the sera of 80 volunteers living in the mountainous regions of the Himalayas. The optimal cut-off was calculated for serum biomarkers against the histology. Kathmandu patients (43.8%) were serologically positive for H. pylori infection, which was significantly lower than that for the mountainous (61.3%, P = 0.01). The same results also found in the prevalence of PG-positivity, PG I levels and PG I/II ratios (P = 0.001, P<0.0001 and P = 0.03, respectively). Moreover, the PG I/II ratios were significantly, and inversely correlated with the OLGA score (r = -0.33, P<0.009). The low incidence of gastric cancer in Nepal can be attributed to low gastric mucosal atrophy. However, the mountainous subjects have high-risk gastric mucosal status, which could be considered a high-risk population in Nepal.

• 천문학회보
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• 제42권1호
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• pp.54.1-54.1
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• 2017

The UKIRT Wide-field Infrared survey for Fe+(UWIFE) is an unbiased survey of the first Galactic quadrant, with narrow-band filter centered on $1.644{\mu}m$. This survey covers $7^{\circ}$ < l < $62^{\circ}$ and |b| < $1.5^{\circ}$, where active interaction of stars and interstellar medium is expected. With median seeing of 0.8 arcsec, 5 - sigma detection limit of 18.7 mag and surface brightness limit of $8.1{\times}10^{-20}W\;m^{-2}arcsec^{-2}$, this survey gives an opportunity to statistically study Galactic [Fe II] - emitting sources for the first time. In order to identify Ionized Fe Objects (IFOs) in survey area systematically, we conducted visual inspection and automatic detection simultaneously. Total of ~300 extended IFOs are identified, most of them are found out to be part of supernova remnants (SNRs), young stellar objects, HII regions and planetary nebulae. The majority of IFOs are new discoveries which reveal shocked structures in high-extinction region. Spatial distribution of IFOs suggest that they trace Galactic structure. As a part of spectroscopic follow-up, we observed SNR candidate IFO J183740.829-061452.41 with IGRINS (Immersion Grating Infrared Spectrograph, Yuk+2010), mounted on 2.7m Harlan Smith telescope. This unknown arc-like, 6'-long IFO is coincident with inner part of radio continuum loop G25.8+0.2, which has been known as HII region. However, interior of this radio shell is filled with diffuse soft X-ray emission, and possible association of hard X-ray pulsar / pulsar wind nebula makes the nature of the IFO unclear. The H and K-band 2D spectrum shows shock-ionized [Fe II] filaments, which is apart from photoionized HII filaments. In this presentation we present basic statistics of newly identified IFOs, as well as the follow-up study of IFO J183740.829-061452.41.

• Environmental Engineering Research
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• 제24권1호
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• pp.159-172
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• 2019

To investigate the influence of pollution events on the chemical composition and formation processes of aerosol particles, 24-h integrated size-segregated particulate matter (PM) was collected during the fall season at an urban site of Gwangju, Korea and was used to determine the concentrations of mass, water-soluble organic carbon (WSOC) and ionic species. Furthermore, black carbon (BC) concentrations were observed with an aethalometer. The entire sampling period was classified into four periods, i.e., typical, pollution event I, pollution event II, and an Asian dust event. Stable meteorological conditions (e.g., low wind speed, high surface pressure, and high relative humidity) observed during the two pollution events led to accumulation of aerosol particles and increased formation of secondary organic and inorganic aerosol species, thus causing $PM_{2.5}$ increase. Furthermore, these stable conditions resulted in the predominant condensation or droplet mode size distributions of PM, WSOC, $NO_3{^-}$, and $SO{_4}^{2-}$. However, difference in the accumulation mode size distributions of secondary water-soluble species between pollution events I and II could be attributed to the difference in transport pathways of air masses from high-pollution regions and the formation processes for the secondary chemical species. The average absorption ${\AA}ngstr{\ddot{o}}m$ exponent ($AAE_{370-950}$) for 370-950 nm wavelengths > 1.0 indicates that the BC particles from traffic emissions were likely mixed with light absorbing brown carbon (BrC) from biomass burning (BB) emissions. It was found that light absorption by BrC in the near UV range was affected by both secondary organic aerosol and BB emissions. Overall, the pollution events observed during fall at the study site can be due to the synergy of unfavorable meteorological conditions, enhanced secondary formation, local emissions, and long-range transportation of air masses from upwind polluted areas.

• BMB Reports
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• 제32권4호
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• pp.409-413
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• 1999

The cDNA encoding CMP-NeuAc:lactosylceramide ${\alpha}2$,3-sialyltransferase (GM3 synthase) was isolated from a human fetal brain cDNA library using sequence information obtained from amino acid sequences found in the conserved regions of the previously-cloned mouse GM3 synthase (mST3Gal V) and human sialyltransferases. The cDNA sequence included an open reading frame coding for 362 amino acids, and the primary structure of this enzyme predicted all the structural features characteristic of other sialyltransferases, including a type II membrane protein topology and both sialylmotifs. Comparative analysis of this cDNA with mST3Gal V showed 85% and 86% identity of the nucleotide and amino acid residues, respectively. The expression of this gene is highly restricted in both human fetal and adult tissues.