• BMB Reports
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• v.44 no.2
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• pp.118-122
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• 2011

Most widely used secondary structure assignment methods such as DSSP identify structural elements based on N-H and C=O hydrogen bonding patterns from X-ray or NMR-determined coordinates. Secondary structure assignment algorithms using limited $C{\alpha}$ information have been under development as well, but their accuracy is only ~80% compared to DSSP. We have hereby developed SABA (Secondary Structure Assignment Program Based on only Alpha Carbons) with ~90% accuracy. SABA defines a novel geometrical parameter, termed a pseudo center, which is the midpoint of two continuous $C{\alpha}s$. SABA is capable of identifying $\alpha$-helices, $3_{10}$-helices, and $\beta$-strands with high accuracy by using cut-off criteria on distances and dihedral angles between two or more pseudo centers. In addition to assigning secondary structures to $C{\alpha}$-only structures, algorithms using limited $C{\alpha}$ information with high accuracy have the potential to enhance the speed of calculations for high capacity structure comparison.

• Steel and Composite Structures
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• v.28 no.2
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• pp.179-194
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• 2018

Reliable and accurate method of computationally aided design processes of advanced thin walled structures in automotive industries are much essential for the efficient usage of smart materials, that possess higher energy absorption in dynamic compression loading. In this paper, most versatile components i.e., thin walled crash tubes with different geometrical profiles are introduced in view of mitigating the impact of varying cross section in crash behavior and energy absorption characteristics. Apart from the geometrical parameters such as length, diameter and thickness, the non-dimensionalized parameters of average forces which control the plastic bending moment for varying thickness has explored in view of quantifying its impact on the crashworthiness of the structure. The explicit finite element code ABAQUS is utilized to conduct the numerical studies to examine the effect of parametric modifications in crash behavior and energy absorption. Also the simulation results are experimentally validated. It is evident that the circular cross-sectional tubes are preferable as high collision impact shock absorbers due to their ability in withstanding axial and oblique impact loads effectively. Furthermore, the specific energy absorption (SEA), crash force efficiency (CFE), plastic bending moment, peak force responses and its impact for optimally tailoring a design to cater the crashworthiness requirements are investigated. The primary outcome of the study is to provide sufficient information on circular tubes for the use of energy absorbers where impact oblique loading is expected.

• Structural Engineering and Mechanics
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• v.8 no.3
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• pp.233-242
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• 1999

In the present study, the elasto-plastic analysis of prismatic plate structures subjected to pure bending is carried out using the finite strip method. The end cross-sections of the structure are assumed to remain plane during deformation, and the compatibility along corner lines is ensured by choosing proper displacement functions. The effects of both the initial geometrical imperfections and residual stresses due to fabrication are included in the combined geometrically and materially nonlinear simulation. The von-Mises yield criterion and the Prandtl-Reuss flow theory of plasticity are applied in modelling the elasto-plastic behavior of material. Newton-Raphson iterations are carried out as the rotation of the end cross sections of the structure is increased step by step. The parameter representing the overall axial strain of structure is adjusted constantly during the iteration process in order to eliminate the resulting overall axial force on any cross-section of the structure in correspondence with the assumption of zero axial force in pure bending. Several numerical examples are presented to validate the present method and to investigate the effects of some material and geometrical parameters.

• Steel and Composite Structures
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• v.50 no.2
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• pp.159-181
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• 2024

In the present study, the effect of geometrical parameters of two different types of aluminum thin-walled structures on energy absorption under three-bending impact loading has been investigated experimentally and numerically. To evaluate the effect of parameters on the specific energy absorption (SEA), initial peak crushing force (IPCF), and the maximum crushing distance (δ), a design of experiment technique (DOE) with response surface method (RSM) was applied. Four different thin-walled structures have been tested under the low-velocity impact, and then they have simulated by ABAQUS software. An acceptable consistency between the numerical and experimental results was obtained. In this study, statistical analysis has been performed on various parameters of three different types of tubes. In the first and the second statistical analysis, the dimensional parameters of the cross-section, the number of holes, and the dimensional parameter of holes were considered as the design variables. The diameter reduction rate and the number of sections with different diameters are related to the third statistical analysis. All design points of the statistical method have been simulated by the finite element package, ABAQUS/Explicit. The final result shows that the height and thickness of tubes were more effective than other geometrical parameters, and despite the fact that the deformations of the cylindrical tubes were around forty percent greater than the rectangular tubes, the top desirability was relevant to the cylindrical tubes with reduced cross-sections.

• Steel and Composite Structures
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• v.36 no.2
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• pp.143-161
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• 2020

In nanosized structures as the surface area to the bulk volume ratio increases the classical continuum mechanics approaches fails to investigate the mechanical behavior of such structures. In perforated nanobeam structures, more decrease in the bulk volume is obtained due to perforation process thus nonclassical continuum approaches should be employed for reliable investigation of the mechanical behavior these structures. This article introduces an analytical methodology to investigate the size dependent, surface energy, and perforation impacts on the nonclassical bending behavior of regularly squared cutout nanobeam structures for the first time. To do this, geometrical model for both bulk and surface characteristics is developed for regularly squared perforated nanobeams. Based on the proposed geometrical model, the nonclassical Gurtin-Murdoch surface elasticity model is adopted and modified to incorporate the surface energy effects in perforated nanobeams. To investigate the effect of shear deformation associated with cutout process, both Euler-Bernoulli and Timoshenko beams theories are developed. Mathematical model for perforated nanobeam structure including surface energy effects are derived in comprehensive procedure and nonclassical boundary conditions are presented. Closed forms for the nonclassical bending and rotational displacements are derived for both theories considering all classical and nonclassical kinematics and kinetics boundary conditions. Additionally, both uniformly distributed and concentrated loads are considered. The developed methodology is verified and compared with the available results and an excellent agreement is noticed. Both classical and nonclassical bending profiles for both thin and thick perforated nanobeams are investigated. Numerical results are obtained to illustrate effects of beam filling ratio, the number of hole rows through the cross section, surface material characteristics, beam slenderness ratio as well as the boundary and loading conditions on the non-classical bending behavior of perforated nanobeams in the presence of surface effects. It is found that, the surface residual stress has more significant effect on the bending deflection compared with the corresponding effect of the surface elasticity, Es. The obtained results are supportive for the design, analysis and manufacturing of perforated nanobeams.

• Journal of Korean Association for Spatial Structures
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• v.2 no.2 s.4
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• pp.69-76
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• 2002

The basic systems of spatial structures such as shells, membranes, cable-nets and tensegrity structures have been developed to create the large spaces without column. But there are some difficulties concerning structural stability, surface formation and construction method. Tensegrity systems are flexible structures which are reticulated spatial structures composed of compressive members and cables. The rigidification of tensegrity systems is related to selfstress states which can be achieved only when geometrical and mechanical requirements are simultaneously satisfied. In this paper, the force density method allowing form-finding for tensegrity systems is presented. And various modules of unit-structures are investigated and discussed using the force density method. Also, a model of double-layered single curvature arch with quadruplex using supplementary cable is presented.

• Proceeding of KASS Symposium
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• 2005.05a
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• pp.167-172
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• 2005

In the dynamic analysis of cable structures, geometrical non-linearity due to the flexibility of cables must be considered efficiently. In this paper, formulation of tangent stiffness matrix of elastic catenary cable is derived by using relative nodal displacements, self-weight and unstressed cable length. Free vibration analysis of simply supported cable using elastic catenary cable elements is conducted and compared with that using truss elements. The result shows that elastic catenary cable elements are more compatible than truss elements in the case of analysis of cable structures. Furthermore, the characteristic of dynamic behaviors of cable structures by temporary unstability phenomenon is confirmed.

• Proceedings of the Computational Structural Engineering Institute Conference
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• 1998.04a
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• pp.272-279
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• 1998

The purpose of this study is to show how to gain the morphology of the Hybrid Spatial Structures and to get the geometrical data such as node coordinates, member relationships and graphic images. To form spatial structures, we have developed morphological aspects of general spatial structures, programming process and techniques. Structural design has many processes. Especially, it is very important to consider the determination of structural configuration. Regular Hybrid Spatial Structures have complex configuration, so we need to make use of automated computer process to determine structural shape in Hybrid Spatial Structures. We have applied morphological aspects to double layer plate, single layer dome, double layer dome and tensegrity structure.

• 한국공간정보시스템학회:학술대회논문집
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• 2004.05a
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• pp.230-237
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• 2004

In this study, equation of finite element is formulated to analyze relations of large deformation-small deformation considering geometrical nonlinear for membrane structure. Total Lagrangian Formulation(TLF) is introduced to formulate theory and equation of motion considering Triangular Constant Strain(TCS) element in finite, element analysis is formulated. Finite element program is made by equation of motion considering TLF. This study analyzed a variety of examples, so compared with the past results.

• Proceedings of the Computational Structural Engineering Institute Conference
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• 2003.04a
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• pp.69-76
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• 2003

We investigate the fundamental mechanisms of the dynamic instability when the sinusoidal shaped arch structures subjected to sinusoidal harmonic excitation with pin-ends. In nonlinear dynamics, examining the characteristics of attractor on the phase plane and investigating the dynamic buckling process are very important thing for understanding why unstable phenomena are sensitively originated by various initial conditions. In this study, the direct and the indirect snap-buckling of shallow arches considering geometrical nonlinearity are investigated numerically and compared with the step excitation critical load.