• The Plant Pathology Journal
• /
• v.35 no.2
• /
• pp.125-136
• /
• 2019

Vitis vinifera is very susceptible to downy mildew (Plasmopara viticola). A number of authors have suggested different genetic populations of this fungus exist in Europe, each showing a different degree of virulence. Work performed to date indicates this diversity to be the result of different factors. In areas where gene flow is greater and recombination more frequent, the diversity of P. viticola appears to be wider. In vineyards isolated by geographic barriers, a race may become dominant and produce clonal epidemics driven by asexual reproduction. The aim of the present work was to identify the conditions that influence the genetic diversity of P. viticola populations in the vineyards of northwestern Spain, where the climatic conditions for the growth of this fungus are very good. Vineyards situated in a closed, narrow valley of the interior, in more open valleys, and on the coast were sampled and the populations of P. viticola detected were differentiated at the molecular level through the examination of microsatellite markers. The populations of P. viticola represented in primary and secondary infections were investigated in the same way. The concentration of airborne sporangia in the vegetative cycle was also examined, as was the virulence of the different P. viticola populations detected. The epidemiological characteristics of the fungus differed depending on the degree of isolation of the vineyard, the airborne spore concentration, and on whether the attack was primary or secondary. Strong isolation was associated with the appearance of dominant fungal races and, therefore, reduced populational diversity.

• Proceedings of the National Institute of Ecology of the Republic of Korea
• /
• v.3 no.2
• /
• pp.77-83
• /
• 2022

This study was conducted from March 2018 to December 2019 to identify bird diversity and environmental correlates within the Mulchat-oream wetlands in the Jeju Islands of South Korea. A total of 255 individual belonging to 37 species were recorded form Mulchat-oream. The observation produced a species diversity of 3.14, species richness of 6.54 and species evenness of 0.88 in 2018, and in 2019, the observed species diversity was 3.02, species richness was 6.56 and species evenness was 0.84. The highly dominant species are composed of Passeriformes. The absence of diverse submerged plants, deep water depth and isolated geographical locations makes difficult for aquatic birds to prefer this area, and this has resulted in the dominance of Passeriformes. The appearance of the birds was the lowest in the winter and highest during the summer. The analysis showed that the species richness and evenness increased with an increase in temperature and precipitation. However, the number of species appearing during Mulchat-oream significantly dependent on the temperature (P<0.001, df=2). To date, there has been little research on bird diversity together with environmental factors for the Hallasan National Park. This study shows the environmental factors and seasonal patterns that affect bird population.

• Parasites, Hosts and Diseases
• /
• v.52 no.5
• /
• pp.557-564
• /
• 2014

The vir genes are antigenic genes and are considered to be possible vaccine targets. Since India is highly endemic to Plasmodium vivax, we sequenced 5 different vir genes and investigated DNA sequence variations in 93 single-clonal P. vivax isolates. High variability was observed in all the 5 vir genes; the vir 1/9 gene was highly diverged across Indian populations. The patterns of genetic diversity do not follow geographical locations, as geographically distant populations were found to be genetically similar. The results in general present complex genetic diversity patterns in India, requiring further in-depth population genetic and functional studies.

• Current Research on Agriculture and Life Sciences
• /
• v.30 no.2
• /
• pp.115-123
• /
• 2012

Whiteflies harbor several secondary endosymbionts, which are maternally inherited from mother to offspring, that have major effects on host preferences, biology, and evolution. Here, we identified Wolbachia bacteria in sweetpotato whitefly (Bemisia tabaci) as well as whitefly popluations from other countries by comparison of 16S rDNA sequences. Wolbachia were detected in all tested indigenous B. tabaci populations (Bangladesh, Myanmar, Nepal, and the Philippines) as well as Q1 biotype of Korea, whereas they were absent from B biotype of Korea and Q biotype of China. Wolbachia were also detected in all five tested Aleurodicus dispersus populations as well as Tetraleurodes acaciae, whereas they were not detected in all seven Trialeurodes vaporariorum populatuions. In addiiton, Wolbachia were detected in parasitic wasp (Encarsia formosa) of B. tabaci as well as honeybee (Apis mellifera). Among the 19 whitefly populations from different countries, our analysis identified four phylogenetic groups of Wolbachia, thereby demonstrating the high diversity of this genus. Wolbachia phylogeny suggests a correlation of geographical range with ecological variation at the species level.

• Journal of the Korean Society of Environmental Restoration Technology
• /
• v.18 no.3
• /
• pp.39-50
• /
• 2015

This research selected Daegu Metropolitan City representing a combination of natural space and urban space for this case study. To achieve this, a prerequisite was to set up an optimal block size to evaluate landscape diversity of the research site by using a RPR-Area Curve. Further, landscape diversity evaluation was conducted based on land cover map by using FRAGSTATS to analyze spatio-temporal changes. Notably, this research regarded it as the most significant to set forth criteria in order to apply landscape diversity to the development plans of the newtown and outskirt of a city under high pressure development. Results derived from this research are summarized as follows. According to the results derived from establishing the optimal block size, a size about $2km^2$ was analyzed to measure landscape diversity of the research site. Also, according to the results derived from land diversity evaluation based on land cover map, land diversity was highly measured around urban stream such as Nakdong River and Geumho River, and in particular, the value of landscape diversity was measured considerably high around the urban parks. Results derived from analysis on spatio-temporal changes of land diversity demonstrated that a certain level of urban development exerted a positive effect on an increase in land diversity, but consistent urban development lowered a value of landscape diversity. Results derived from regression analysis to set forth the optimal urban space showed that an urban area of a space about $2km^2$ exerted a positive effect at a rate of about 0~43.3% and a negative effect at a rate about 43.3~100%. In conclusion, the results of this research are considered to provide important basic data for future urban and landscape planning. Nonetheless, as only the layout on the 2D plane was analyzed in this research, further research in future is required to complexly consider diverse factors such as height of structure and change in visible real area arising from geographical features.

• Asian-Australasian Journal of Animal Sciences
• /
• v.16 no.2
• /
• pp.277-281
• /
• 2003

Amplified fragment length polymorphism (AFLPs) markers were used to investigate the genetic variation in six autochthonous goat populations distributed in the middle and lower Yangtze River valley. The goat populations were Chengdu Grey Goat (CGG), Chuandong White Goat (CWG), Banjiao Goat (BG), Matou Goat (MG), Hui Goat (HG) and Yangtze River Delta White Goat (YRDWG). A total of 180 individuals (30 per population) were analysed using ten selected AFLP primer combinations that produced 78 clear polymorphism loci. The variability at AFLP loci was largely maintained within populations, as indicated by the average genetic similarity, and they were ranged from 0.745 to 0.758 within populations and 0.951 to 0.970 between populations. No breed specific markers were identified. Cluster analysis based on Nei' genetic distance between populations indicated that Chengdu Grey Goat is the most distant population, while CWG and YROWG were the closest populations, followed by BG, HG and MG. Genetic diversity of the goat populations didn' confirm what was expected on the basis of their geographical location, which may reflect undocumented migrations and gene flows and identify an original genetic resource.

• Asian-Australasian Journal of Animal Sciences
• /
• v.22 no.1
• /
• pp.1-6
• /
• 2009

Genetic variability is an important component in the ability of populations to adapt in the face of environmental change. Severe human impacts reduced Muzzafarnagri sheep of India from 500,000 in 1972 to 10,989 in 1973-74. Here we report for the first time the effect of this population decline on levels of genetic variability at 13 FAO recommended ovine microsatellite loci and contrast levels of variability to that in a breed from the same geographical region, which differed in numbers, by an order of magnitude (Marwari sheep). Of the 13 loci, 100% were polymorphic in both breeds. A high degree of genetic variation was observed within populations in terms of both allele diversity (number of alleles per locus, >4) and gene diversity (expected heterozygosity, >0.5), which implied that there is still a substantial amount of genetic diversity at the nuclear loci in a declining population. Nevertheless, overall low number of alleles per locus and relatively less abundance of low frequency alleles in Muzzafarnagri sheep suggested that genetic variability has been comparatively reduced in this population. Bottleneck analysis indicated that a genetic bottleneck did not occur during the most recent decline. In addition, we found that the differentiation among populations was moderate ($F_{ST}$= 11.8%). This study on assessment of genetic effects of the population declines in ovines is a step towards identification of genetically impoverished or healthy populations, which could prove to be a useful tool to facilitate conservation planning in this important species of small ruminants.

• The Plant Pathology Journal
• /
• v.27 no.2
• /
• pp.128-137
• /
• 2011

Fifty two Macrophomina phaseolina isolates were recovered from 24 host plant species through the 14 Iranian provinces. All isolates were confirmed to species using species-specific primers. The colony characteristics of each isolate were recorded, including chlorate phenotype, relative growth rate at $30^{\circ}C$ and $37^{\circ}C$, average size of microsclerotia, and time to microsclerotia formation. The feathery colony phenotype was the most common (63.7%) on the chlorate selective medium and represented the chlorate sensitive phenotype of the Iranian Macrophomina phaseolina population. Meantime, inter simple sequence repeats (ISSR) Markers were used to assess the genetic diversity of the fungus. Unweighted pair-group method using arithmetic means (UPGMA) clustering of data showed that isolates did not clearly differentiate to the specific group according to the host or geographical origins, however, usually the isolates from the same host or the same geographic origin tend to group nearly. Our results did not show a correlation between the genetic diversity based on the ISSR and phenotypic characteristics. Similar to the M. phaseolina populations in the other countries, the Iranian isolates were highly diverse based on the phenotypic and the genotypic characteristics investigated and needs more studies using neutral molecular tools to get a deeper insight into this complex species.

• The Plant Pathology Journal
• /
• v.31 no.2
• /
• pp.115-122
• /
• 2015

Anthracnose, caused by Colletotrichum gloeosporioides (C. gloeosporioides; Teleomorph: Glomerella cingulata), is the most destructive disease that affects sweet persimmon production worldwide. However, the biology, ecology, and genetic variations of C. gloeosporioides remain largely unknown. Therefore, in this study, the development of fungicide resistance and genetic diversity among an anthracnose pathogen population with different geographical origins and the exposure of this population to different cultivation strategies were investigated. A total of 150 pathogen isolates were tested in fungicide sensitivity assays. Five of the tested fungicides suppressed mycelial pathogen growth effectively. However, there were significant differences in the sensitivities exhibited by the pathogen isolates examined. Interestingly, the isolates obtained from practical management orchards versus organic cultivation orchards showed no differences in sensitivity to the same fungicide. PCR-restriction fragment length polymorphism (RFLP) analyses were performed to detect internal transcribed spacer regions and the ${\beta}$-tubulin and glutamine synthetase genes of the pathogens examined. Both the glutamine synthetase and ${\beta}$-tubulin genes contained a complex set of polymorphisms. Based on these results, the pathogens isolated from organic cultivation orchards were found to have more diversity than the isolates obtained from the practical management orchards.

• Journal of Institute of Control, Robotics and Systems
• /
• v.19 no.10
• /
• pp.907-914
• /
• 2013

A FastSLAM is an algorithm for SLAM (Simultaneous Localization and Mapping) using a Rao-Blackwellized particle filter and its performance is known to degenerate over time due to the loss of particle diversity, mainly caused by the particle depletion problem in the resampling phase. In this paper, the GeSPIR (Geographically Stratified Particle Information-based Resampling) technique is proposed to solve the particle depletion problem. The proposed algorithm consists of the following four steps : the first step involves the grouping of particles divided into K regions, the second obtaining the normal weight of each region, the third specifying the protected areas, and the fourth resampling using regional equalization weight. Simulations show that the proposed algorithm obtains lower RMS errors in both robot and feature positions than the conventional FastSLAM algorithm.