• Title/Summary/Keyword: Genetic-analysis

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Genetic Analysis of TGFA, MTHFR, and IFR6 in Korean Patients Affected by Nonsyndromic Cleft Lip with or without Cleft Palate (CL/P)

  • Park, Jung-Young;Yoo, Han-Wook;Kim, Young-Ho
    • Genomics & Informatics
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    • v.5 no.2
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    • pp.56-60
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    • 2007
  • Nonsyndromic cleft lip with or without cleft palate (CL/P) is a common craniofacial birth defect that is the result of a mixture of genetic and environmental factors. While studies have identified a number of different candidate genes and loci for the etiology of CL/P, the results have not been consistent among different ethnic groups. To study the genetic association of the candidate genes in Korean patients affected by CL/P, we genotyped 97 nonsyndromic CL/P patients and 100 control individuals using single nucleotide polymorphic markers at the MTHFR, TGFA, and IRF6 genes. We report that the T3827C marker at TGFA showed significant association with nonsyndromic CL/P, but all the other markers tested were not significantly associated with nonsyndromic CL/P in Korean patients.

An Interference Avoidance Method Using Two Dimensional Genetic Algorithm for Multicarrier Communication Systems

  • Huynh, Chuyen Khoa;Lee, Won Cheol
    • Journal of Communications and Networks
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    • v.15 no.5
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    • pp.486-495
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    • 2013
  • In this article, we suggest a two-dimensional genetic algorithm (GA) method that applies a cognitive radio (CR) decision engine which determines the optimal transmission parameters for multicarrier communication systems. Because a CR is capable of sensing the previous environmental communication information, CR decision engine plays the role of optimizing the individual transmission parameters. In order to obtain the allowable transmission power of multicarrier based CR system demands interference analysis a priori, for the sake of efficient optimization, a two-dimensionalGA structure is proposed in this paper which enhances the computational complexity. Combined with the fitness objective evaluation standard, we focus on two multi-objective optimization methods: The conventional GA applied with the multi-objective fitness approach and the non-dominated sorting GA with Pareto-optimal sorting fronts. After comparing the convergence performance of these algorithms, the transmission power of each subcarrier is proposed as non-interference emission with its optimal values in multicarrier based CR system.

A Study on the Optimal Preform Shape Design using FEM and Genetic Algorithm in Hot Forging (열간단조에서 유한요소법과 유전 알고리즘을 이용한 예비성형체의 최적형상 설계 연구)

  • Yeom, Sung-Ho;Lee, Jeong-Ho;Woo, Ho-Kil
    • Transactions of the Korean Society of Machine Tool Engineers
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    • v.16 no.4
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    • pp.29-35
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    • 2007
  • The main objective of this paper is to propose the optimal design method of forging process using genetic algorithm. Design optimization of forging process was doing about one stage and multi stage. The objective function is considered the filling of die. The chosen design variables are die geometry in multi stage and initial billet shape in one stage. We performed FE analysis to simulated forging process. The optimized preform and initial billet shape was obtained by genetic algorithm and FE analysis. To show the efficiency of GA method in forging problem are solved and compared with published results.

Assessment of Genetic Relationship among Curcurbitaceae Cultivars Revealed by RAPD Marker (RAPD Marker에 의한 호박의 품종간 유연 관계 분석)

  • 김창훈;이승인;유병천;송인호;권용삼
    • Journal of Life Science
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    • v.13 no.5
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    • pp.590-595
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    • 2003
  • The objective of this study was to assess of genetic variation within and between pumpkin species including Cucurbita maxima, C. moschata, C. pepo and C. maxima${\times}$C. moschata using RAPD markers. The 16 primers showed the amplification of 136 scorable fragments ranging from about 100 bp to 2300 bp. A total of 94 DNA fragments were polymorphic with an average 5.9 polymorphic bands per primer. A species $(C. maxima\timesC. moschata)$ has the highest number of polymorphic loci. Based on obtained data, UPGMA cluster analysis was conducted. Twenty pumpkin cultivars were classified into three large categories and identified genetic distance of cluster ranging from 0.38 and 1.00. Clustering was in accordance with the division of Curcurbitaceae into four species, C. maxima, C. moschata, C. pepo and C. $C. maxima\timesC. moschata$. Therefore, RAPD method may be essential tool for enabling discrimination of pumpkin cultivars.

Structural Dynamic Optimization Using a Genetic Algorithm(GA) (유전자 알고리즘(GA)을 이용한 구조물의 동적해석 및 최적화)

  • 이영우;성활경
    • Journal of the Korean Society for Precision Engineering
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    • v.17 no.5
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    • pp.93-99
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    • 2000
  • In many dynamic structural optimization problems, the goal is to reduce the total weight of the structure without causing the resonance. Up to now, gradient informations(i.e., design sensitivity) have been used to achieve the goal. For some class of dynamic problems, especially coalescent eigenvalue Problems with multiobjective optimization, the design sensitivity analysis is too much complicated mathematically and numerically. Therefore, this article proposes a new technique fur structural dynamic modification using a mode modification method with Genetic Algorithm(GA). In GA formulation, fitness is defined based on penalty function approach. Design variables are iteratively improved by using genetic algorithm. Two numerical examples are shown, (ⅰ) a cantilevered plate, and (ⅱ) H-shaped structure. The results demonstrate that the proposed method is highly efficient.

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Effective Gas Identification Model based on Fuzzy Logic and Hybrid Genetic Algorithms

  • Bang, Yonug-Keun;Byun, Hyung-Gi;Lee, Chul-Heui
    • Journal of Sensor Science and Technology
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    • v.21 no.5
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    • pp.329-338
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    • 2012
  • This paper presents an effective design method for a gas identification system. The design method adopted the sequential combination between the hybrid genetic algorithms and the TSK fuzzy logic system. First, the sensor grouping method by hybrid genetic algorithms led the effective dimensional reduction as well as effective pattern analysis from a large volume of pattern dimensions. Second, the fuzzy identification sub-models allowed handling the uncertainty of the sensor data extensively. By these advantages, the proposed identification model demonstrated high accuracy rates for identifying the five different types of gases; it was confirmed throughout the experimental trials.

Genetic Diversity in Rauvolfia tetraphylla L.f using RAPD Markers

  • Padmalatha, K;Prasad, MNV
    • Journal of Plant Biotechnology
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    • v.33 no.2
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    • pp.139-145
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    • 2006
  • The present study is the first report of molecular variations in different accessions of Rauvolfia tetraphylla L.f, a medicinally important plant collected from seven locations of Andhra Pradesh, India. Molecular analysis was carried out using RAPD markers. Out of the 40 primers screened from OPA and OPC Kts, a total of 205 scorable polymorphic markers out of 397 total markers were generated. Polymorphism of 51.6% was found with 3 unique markers. Levels of genetic diversity within accessions i.e., the genetic distance ranged from 0.816-0.932. Cluster analysis based on Dice coefficient showed two major groups indicating that mostly in cross-pollinated plants, high levels of differentiation among accessions exists independent of geographical distance. Hence the results of the present study can be seen as a starting point for future researches on the population and evolutionary genetics of this species. Understanding such variation would also facilitate their use in various conservational management practices, rootstock breeding and hybridisation programmes.

A Study on the Analysis of Power System Stability using MGPSS (MGPSS를 이용한 전력계통안정도 해석)

  • Lee, Sang-Keun
    • The Transactions of the Korean Institute of Electrical Engineers P
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    • v.64 no.1
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    • pp.14-17
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    • 2015
  • This paper presents a analysis method for power system stability using a Modified Genetic-based Power System Stabilizer(MGPSS). The proposed MGPSS parameters are optimized using Modified Genetic Algorithm(MGA) in order to maintain optimal operation of generator under the various operating conditions. To improve the convergence characteristics, real variable string is adopted. The results tested on a single machine infinite bus system verify that the proposed controller has better power system stability than conventional controller.

Evolutionary Study on the Dark Chub (Zacco temmincki) IV. Genetic Variation, Morphology and Artificial Hybridization (갈겨니(Zacco temmincki)의 진화에 관한 연구 IV. 유전적 변이, 형태비교 및 인공교배)

  • 양서영;민미숙
    • The Korean Journal of Zoology
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    • v.30 no.4
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    • pp.417-431
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    • 1987
  • Isozyme analysis, morphometric comparison, and artificial hybridization test wereperformed to elucidate the patterns of genic variation, morphological differentiation, genetic incompatibility, and a probable path in speciation between two MDH allelotypes (MM type and MS type) of the Dark Chub Zacco temmincki, a fresh water fish inhabiting in Korean waters. The degree of genic variation of MS type(HD=.023, HG=.021) was twofold higher than that of MM type (HD=.013, HG=.014) but both allelotypes were far less than the average genic variation of fresh water Bish in general. The average genetic similarities among 7 populations of MM type and 6 Populations of MS type were S=.947 and S=.966 respectively, whereas the value between two allelotypes was S=.853. Presumed divergent time of two allelotypes was estimated to be about 700 thousand years ago. Discriminant function analysis based on 18 morphometric characters of 302 specimens representing 12 populations revealed no morphological difference between two allelotypes. Artificial hybridization test indicates that there is an obvious genetic incogpatibility between two allelotypes and therefore it is assumed that isolating mechanism is completed.

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Analysis of Geographical Genetic Differences of Arkshell Populations in Korea

  • Yoon, Jong-Man
    • Development and Reproduction
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    • v.25 no.2
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    • pp.105-111
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    • 2021
  • A PCR-founded genetic analysis aim and principle was used to foster a hierarchical polar dendrogram of the Euclidean genetic distances (GDs) for two arkshell populations, Scapharca broughtonii (YEOSU, Yeosu population and JINHAE, Jinhae population). Five oligonucleotides primers were make use of to craft 354 and 390 scorable bands in the Yeosu and Jinhae populations, respectively, outspreading in DNA fragment size from 100 bp to 1,600 bp. The bandsharing (BS) results disclosed that the Jinhae population had a higher average BS value (0.700) than that for the Yeosu population (0.692). The GD between individuals supported an adjacent association in grouping II (JINHAE 12 - JINHAE 22). The observation of a noteworthy GD between the two Scapharca populations verified that this PCR-generated technique could be a profitable attempt for within- and between-population-grounded biological DNA scrutiny. The potential of PCR inquiry will be favorable in the selection of individuals and/or populations for several reproductive- and/or quarantine-connected characters in aquafarming manufacture.