• BMB Reports
• /
• 제35권2호
• /
• pp.143-154
• /
• 2002

The structural and functional aspects of ervatamin B were studied in solution. Ervatamin B belongs to the $\alpha+\beta$ class of proteins. The intrinsic fluorescence emission maximum of the enzyme was at 350 nm under neutral conditions, and at 355 nm under denaturing conditions. Between pH 1.0-2.5 the enzyme exists in a partially unfolded state with minimum or no tertiary structure, and no proteolytic activity. At still lower pH, the enzyme regains substantial secondary structure, which is predominantly $\beta$-sheet conformation and shows a strong binding to 8-anilino-1-napthalene-sulfonic acid (ANS). In the presence of salt, the enzyme attains a similar state directly from the native state. Under neutral conditions, the enzyme was stable in urea, while the guanidine hydrochloride (GuHCl) induced equilibrium unfolding was cooperative. The GuHCl induced unfolding transition curves at pH 3.0 and 4.0 were non-coincidental, indicating the presence of intermediates in the unfolding pathway. This was substantiated by strong ANS binding that was observed at low concentrations of GuHCl at both pH 3.0 and 4.0. The urea induced transition curves at pH 3.0 were, however, coincidental, but non-cooperative. This indicates that the different structural units of the enzyme unfold in steps through intermediates. This observation is further supported by two emission maxima in ANS binding assay during urea denaturation. Hence, denaturant induced equilibrium unfolding pathway of ervatamin B, which differs from the acid induced unfolding pathway, is not a simple two-state transition but involves intermediates which probably accumulate at different stages of protein folding and hence adds a new dimension to the unfolding pathway of plant proteases of the papain superfamily.

• Plant Resources
• /
• 제8권1호
• /
• pp.60-66
• /
• 2005

Lysine is the first essential amino acid for optimal nutrient quality in rice grain. For the narrow genetic diversities of lysine contents in rice, somaclonal variation was the source of mutation in our breeding program. Biochemical selection was conducted using 1 mM S-(2-aminoethyl) cysteine followed by two passages of 5 mM lysine plus threonine in the callus subculture medium. The lysine contents in endosperm of all progenies recovered from the biochemical selection were higher than those of their donor cultivar 'Hwayeongbyeo'. These elevated lysine levels of mutants were successfully transmitted to $M_4$ generation. The lysine contents in endosperm varied 3.85 to $4.80\%$ compare to their donor cultivar 'Hwayeongbyeo' was $3.85\%$. Three of high-lysine germplasms, Lys-l, Lys-2 and Lys-7 were selected by biochemical selection and rapid screening methods. DNA analysis showed that a new insertion of Tos 17 which mapped to rice chromosome 11 on the high-lysine mutant, Lys-2.

• Food Science and Biotechnology
• /
• 제16권1호
• /
• pp.99-103
• /
• 2007

The purpose of this study was to develop a simple detection method, possibly at the species-level, that allows for large-scale screening of bifidobacteria. Human fecal samples were plated on MRS-raffinose agar containing cysteine and neomycin sulfate, serving as selective pressure for bifidobacteria, and 0.003%(w/v) bromocresol green. All of the test strains grew well on this medium at $37{\pm}1^{\circ}C$, forming white colonies surrounded by yellow halos, which presented a sharp contrast against the green background. In this disc assay, the required incubation time to develop a yellowish zone varied with the species of Bifidobacterium that was tested, allowing for differential counts and easy identification at the species-level: 10-14 hr for B. bifidum, 20-22 hr for B. catenulatum and B. infantis. and 24-25 hr for B. longum and B. breve. No apparent color was observed for B. angulatum and B. adolescentis 28 hr after inoculation. To evaluate the results of pH indicator-based identification, individual isolates were subjected to a colony-PCR experiment with genus-specific primers. The amplified products from the isolates were in good accordance with those from the reference strains at a level of 95% agreement. These results suggest that the present method could be conveniently applied to cell counts, as well as to the preliminary identification of bifidobacteria from a variety of sample types including human feces, dairy products, and commercial probiotic supplements.

• Fisheries and Aquatic Sciences
• /
• 제25권6호
• /
• pp.335-349
• /
• 2022

To optimize the hydrolysis conditions in the production of antioxidant hydrolysates from tuna cooking juice concentrate (TC) to maximize the 2,2-diphenyl-1-picrylhydrazyl (DPPH) radical scavenging activity, TC containing 48.91% protein was hydrolyzed with Alcalase 2.4 L, and response surface methodology (RSM) was applied. The optimum hydrolysis conditions included a 2.2% (w/v) Alcalase concentration and 281 min hydrolysis time, resulting in the highest DPPH radical scavenging activity of 66.49% (0.98 µmol Trolox/mg protein). The analysis of variance for RSM showed that hydrolysis time was an important factor that significantly affected the process (p < 0.05). The effects of different drying methods (freeze drying, hot air drying, and vacuum drying) on the DPPH radical scavenging activity and amino acid (AA) profiles of TC hydrolysate (TCH) were evaluated. Vacuum-dried TCH (VD) exhibited an increase in DPPH radical scavenging activity of 81.28% (1.20 µmol Trolox/mg protein). The VD samples were further fractionated by ultrafiltration. The AA profiles and antioxidant activities in terms of the DPPH radical scavenging activity, 2,2'-azino-bis(3-ethylbenzthiazoline)-6-sulfonic acid (ABTS) radical scavenging activity, ferric reducing antioxidant power, and ferrous ion chelating activity were investigated. Glutamic acid, glycine, arginine, and cysteine were the major AAs found in the TCH fractions. The highest DPPH radical scavenging activity was found in the VD-1 fraction (< 5 kDa). The VD-3 fraction (> 10 kDa) exhibited the highest ABTS radical scavenging activity and ferric reducing antioxidant power. The ferrous ion chelating activity was the highest in VD-1 and VD-2 (5 to 10 kDa). In conclusion, this study provided the optimal conditions to obtain high antioxidant activities through TCH production, and these conditions could provide a basis for the future application of TCH as a functional food ingredient.

• Mass Spectrometry Letters
• /
• 제13권4호
• /
• pp.133-138
• /
• 2022

Taurine is a type of sulfur-containing amino acid having a sulfate functional group, that is biosynthesized from cysteine. It is mainly distributed in high concentrations in animal tissues and is known to have various effects such as osmotic pressure control, calcium control, anti-inflammatory, antioxidant, and hepatocellular protection. Also, taurine deficiency causes a variety of symptoms, including visual impairment. In particular, in the case of cats, taurine is not biosynthesized and must be supplied through food, so it is classified as an essential amino acid. In this study, an analysis method using mass spectrometry was developed instead of the commonly used derivatization method to quickly, environmentally, and precisely analyze taurine in various animal feeds. The developed analytical method showed good linearity (R² > 0.99), accuracy (81.97-105.78%), and precision (0.07-12.37%). In addition, the developed method was further verified through quantitative comparison with the derivatization method. This developed method was used in the determination of taurine in 20 animal feed samples obtained from South Korea. The levels of taurine found ranged from 81.53 to 6,743.53 mg/kg. The developed analysis method will be used for the detection and quantification of taurine in domestic feed.

• 한국식품영양과학회지
• /
• 제37권2호
• /
• pp.184-189
• /
• 2008

본 연구는 순비기나무(Vitex rotundifolia)의 열매(만형자)와 줄기를 기능성 식품 개발을 위한 연구의 일환으로 영양성분 및 생리활성 물질의 함량을 알아보기 위하여 순비기나무의 일반성분, 당, 수용성 단백질, 폴리페놀 화합물, 아미노산 및 무기질의 함량을 분석하였다. 순비기나무의 열매에는 수분 12.92%, 탄수화물 78.67%, 조단백질 3.22%, 조지방 1.73% 그리고 조회분 3.46%로 구성되었으며, 줄기에는 수분 11.30%, 탄수화물 80.87%, 조단백질 4.78%, 조지방 0.64%, 조회분 2.41%로 분석되었다. 당의 함량을 분석한 결과 열매의 환원당은 646.07 mg%이었으며, 유리당은 5.66 mg%를 나타내었다. 줄기에는 환원당 1,547.97 mg%, 유리당 30.79mg%로 열매보다 줄기에 당 함량이 높았다. 수용성 단백질은 열매 3,268.12 mg%, 줄기 4,927.55 mg%, 폴리페놀 화합물은 각각 608.06 mg%와 808.06 mg%로 순비기나무 열매보다 줄기의 수용성 단백질과 폴리페놀의 함량이 높았다. 열매의 구성아미노산은 3,095.72 mg%로 cysteine이 2,010.82 mg%로 전체 아미노산의 65%를 차지하였으며, 유리아미노산은 79.99 mg%를 함유하였다. 줄기의 구성아미노산은 총 함량은 2,135.84 mg%로 필수아미노산(1,741.57 mg%)이 전체 구성아미노산의 81% 이상을 차지하였으며, 유리아미노산은 81.20 mg%이었다. 열매의 아미노산 유도체는 140.18 mg%이었으며, 줄기에는 150.97 mg%를 나타내었다. 무기질 함량을 분석한 결과, K의 함량이 열매 2,184.00 mg%, 줄기 1,469.20 mg%로 가장 많았으며 Ca와 Mg도 비교적 높았다. 이상의 결과로 미루어 보아 한방생약재로 사용되고 있는 순비기나무 열매(만형자)와 줄기에도 영양성분과 생리활성 성분을 다량 함유하므로 이를 이용한 음료 및 다양한 기능성 식품이나 제품에 활용할 수 있을 것으로 기대된다.

• 생명과학회지
• /
• 제23권10호
• /
• pp.1223-1229
• /
• 2013

우르솔산(Ursolic acid)은 다양한 약재, 과일 그리고 야채 등으로 부터 분리되는 식물성 생리활성물질로서, 천연 항산화제로 널리 알려져 있지만, 배아줄기세포에서 우르솔산의 기능에 대한 연구는 아직까지 잘 이해되지 않고 있다. 본 연구에서는 저산소 상태에서 우르솔산이 배아줄기세포의 성장에 미치는 효과에 대해 조사하였다. 48시간 동안의 저산소 환경은 배아줄기세포의 미분화상태 및 전능성을 유지에 있어서 영향을 미치지 않았지만, 세포 내 활성산소종의 지속적인 생산과 이로 인한 lactate dehydrogenase 활성을 촉진 시켰다. 저산소에 의해 유도된 배아줄기세포의 산화적 스트레스는 $30{\mu}M$의 우르솔산의 처리로 인해 유의적으로 감소되었으며, 이러한 우르솔산의 활성산소 소거능력은 항산화제인 N-acetyl-cysteine (NAC)의 효과와 유사하였다. 저산소 환경은 또한 유의적으로 배아줄기세포의 생존과 증식을 감소 시킬 뿐만 아니라, 세포의 자살 및 노화를 유도함이 관찰되었지만, 강한 항산화 능력을 지닌 우르솔산은 세포를 저산소로부터 보호하여 정상수준으로 세포의 생존과 증식을 유지시키고, 세포 자살 관련 단백질(cleaved caspase-3, Bcl-2, 그리고 cIAP) 및 세포 노화 관련 단백질(beta-galactosidase)을 조절하는 탁월한 약리학적 효과를 가지고 있었다. 따라서 본 연구결과를 통해, 우르솔산은 강력한 천연 항산화제이며, 저산소에 의해 유도된 유해 기작을 제어함으로서, 배아줄기세포의 전능성을 유지시킬 수 있는 기능성 물질이라는 것을 알 수 있었다.

• Journal of Periodontal and Implant Science
• /
• 제34권1호
• /
• pp.205-221
• /
• 2004

Periodontal ligament(PDL) cells have been known as playing an important roles in periodontal regeneration and gingival fibroblasts are also important to periodontal regeneration by forming connective tissue attachment. There were rare studies about the gene expression patterns of PDL cells and gingival fibroblasts, therefore in this study, we tried cDNA microarray-based gene expression monitoring to explain the functional differences of PDL cells and gingival fibroblasts in vivo and to confirm the characteristics of PDL cells. Total RNA were extracted from PDL cells and gingival fibroblasts of same person and same passages, and mRNA were isolated from the total RNA using Oligotex mRNA midi kit(Qiagen) and then fluorescent cDNA probe were prepared. And microarray hybridization were performed. The gene expression patterns of PDL cells and gingival fibroblasts were quite different. About 400 genes were expressed more highly in the PDL cells than gingival fibroblasts and about 300 genes were more highly expressed in the gingival fibroblasts than PDL cells. Compared growth factor- and growth factor receptor-related gene expression patterns of PDL cells with gingival fibroblasts, IGF-2, IGF-2 associated protein, nerve growth factor, placental bone morphogenic protein, neuron-specific growth- associated protein, FGF receptor, EGF receptor-related gene and PDGF receptor were more highly expressed in the PDL cells than gingival fibroblasts. The results of collagen gene expression patterns showed that collagen type I, type III, type VI and type VII were more highly expressed in the PDL cells than gingival fibroblasts, and in the gingival fibroblasts collagen type V, XII were more highly expressed than PDL cells. The results of osteoblast-related gene expression patterns showed that osteoblast specific cysteine-rich protein were more highly expressed in the PDL cells than gingival fibroblasts. The results of cytoskeletal proteins gene expression patterns showed that a-smooth muscle actin, actin binding protein, smooth muscle myosin heavy chain homolog and myosin light chain were more highly expressed in the PDL cells than gingival fibrobalsts, and ${\beta}-actin$, actin-capping protein(${\beta}$ subunit), actin- related protein Arp3(ARP) and myosin class I(myh-1c) were more highly expressed in the gingival fibroblasts than PDL cells. Osteoprotegerin/osteoclastogenesis inhibitory factor(OPG/OCIF) was more highly expressed in the PDL cells than gingival fibroblasts. According to the results of this study, PDL cells and gingival fibroblasts were quite different gene expression patterns though they are the fibroblast which have similar shape. Therefore PDL cells & gingival fibroblasts are heterogeneous populations which represent distinct characteristics. If more studies about genes that were differently expressed in each PDL cells & gingival fibroblasts would be performed in the future, it would be expected that the characteristics of PDL cells would be more clear.

• Asian-Australasian Journal of Animal Sciences
• /
• 제30권11호
• /
• pp.1633-1642
• /
• 2017

Objective: Evaluation of exercise effects in racehorses is important in horseracing industry and animal health care. In this study, we compared metabolic patterns between before and after exercise to screen metabolic biomarkers for exercise effects in thoroughbreds. Methods: The concentration of metabolites in muscle, plasma, and urine was measured by $^1H$ nuclear magnetic resonance (NMR) spectroscopy analysis and the relative metabolite levels in the three samples were compared between before and after exercise. Subsequently, multivariate data analysis based on the metabolic profiles was performed using orthogonal partial least square discriminant analysis (OPLS-DA) and variable important plots and t-test was used for basic statistical analysis. Results: From $^1H$ NMR spectroscopy analysis, 35, 25, and 34 metabolites were detected in the muscle, plasma, and urine. Aspartate, betaine, choline, cysteine, ethanol, and threonine were increased over 2-fold in the muscle; propionate and trimethylamine were increased over 2-fold in the plasma; and alanine, glycerol, inosine, lactate, and pyruvate were increased over 2-fold whereas acetoacetate, arginine, citrulline, creatine, glutamine, glutarate, hippurate, lysine, methionine, phenylacetylglycine, taurine, trigonelline, trimethylamine, and trimethylamine N-oxide were decreased below 0.5-fold in the urine. The OPLS-DA showed clear separation of the metabolic patterns before and after exercise in the muscle, plasma, and urine. Statistical analysis showed that after exercise, acetoacetate, arginine, glutamine, hippurate, phenylacetylglycine trimethylamine, trimethylamine N-oxide, and trigonelline were significantly decreased and alanine, glycerol, inosine, lactate, and pyruvate were significantly increased in the urine (p<0.05). Conclusion: In conclusion, we analyzed integrated metabolic patterns in the muscle, plasma, and urine before and after exercise in racehorses. We found changed patterns of metabolites in the muscle, plasma, and urine of racehorses before and after exercise.

• 생명과학회지
• /
• 제21권4호
• /
• pp.529-533
• /
• 2011

라미닌-1에 의해 분화가 유도되는 것으로 알려져 있는 HSG 및 PC-12에서는 라미닌-1에 의해 MT 유전자의 발현이 유도되었지만 반면 분화 역량을 지니지 않은 암세포인 유방암(MDA-231, MDA-435) 세포와 전립선 암인 PC-3 세포에서는 라미닌-1의 처리가 MT 유전자의 변화에 영향을 미치지 못하는 것이 관찰되었다. 라미닌-1에 의해 분화가 유도되는 현상 및 이에 따른 MT 유전자의 발현증가가 암의 전이 능력 및 악성화와 관계가 있는지를 관찰하기 위해 정상에서부터 전이 및 악성 정도가 다른 5가지 종류의 전립선 암을 대상으로 라미닌-1에 의한 MT 유전자의 발현 변화를 관찰한 결과 정상적인 전립선 외피세포인 RWPE-1과 전이 및 악성화가 낮은 WPE1-NA22의 경우 라미닌-1에 의해 MT 유전자의 발현이 증가하였으며, 악성화 정도가 높은 WPE1-NB14, WPE1-NB11, 및 WPE1-NB26에서는 라미닌-1의 처리에도 MT 유전자의 발현이 증가하지 않는 것이 관찰되었다. 이러한 결과를 통해 라미닌-1은 정상 세포의 분화를 유도하며 이에 따라 MT 유전자를 유도하며 분화가 유도되지 않는 악성 암에서는 MT 유전자의 발현이 유도되지 않는 것으로 확인되었다.